Wall clock time and date at job start Mon Mar 30 2020 01:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47066 * 2 1 4 4 N 1.46496 * 109.47053 * 120.00109 * 2 1 3 5 5 C 1.34781 * 119.99970 * 275.00346 * 4 2 1 6 6 O 1.21683 * 119.99847 * 359.97438 * 5 4 2 7 7 C 1.46370 * 120.00033 * 180.02562 * 5 4 2 8 8 H 1.08003 * 119.99974 * 5.99810 * 7 5 4 9 9 C 1.40052 * 120.00265 * 186.00354 * 7 5 4 10 10 N 1.30670 * 119.99365 * 353.48697 * 9 7 5 11 11 Si 1.86795 * 120.00237 * 173.76752 * 9 7 5 12 12 H 1.48502 * 109.47353 * 94.97906 * 11 9 7 13 13 H 1.48505 * 109.47172 * 214.97963 * 11 9 7 14 14 H 1.48496 * 109.47184 * 334.97936 * 11 9 7 15 15 C 1.52996 * 109.47471 * 240.00231 * 2 1 3 16 16 H 1.08997 * 109.70659 * 185.58931 * 15 2 1 17 17 C 1.53477 * 109.71063 * 64.99668 * 15 2 1 18 18 O 1.43179 * 108.23941 * 180.58228 * 17 15 2 19 19 C 1.36102 * 116.70739 * 46.23114 * 18 17 15 20 20 C 1.38702 * 119.39950 * 162.74197 * 19 18 17 21 21 C 1.38194 * 120.06567 * 179.85129 * 20 19 18 22 22 C 1.38251 * 120.11529 * 359.97438 * 21 20 19 23 23 C 1.38199 * 120.11089 * 0.10288 * 22 21 20 24 24 C 1.38701 * 120.06523 * 359.95600 * 23 22 21 25 25 O 1.36106 * 119.39209 * 179.71361 * 24 23 22 26 26 H 1.08992 * 109.47270 * 300.00106 * 1 2 3 27 27 H 1.09001 * 109.46488 * 60.00279 * 1 2 3 28 28 H 1.08992 * 109.46917 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00359 * 95.00032 * 4 2 1 30 30 H 0.97005 * 119.99817 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.70834 * 300.27096 * 17 15 2 32 32 H 1.09000 * 109.70116 * 60.85144 * 17 15 2 33 33 H 1.07993 * 119.96426 * 359.86591 * 20 19 18 34 34 H 1.08000 * 119.94316 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.94454 * 180.08348 * 22 21 20 36 36 H 1.08002 * 119.95953 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8580 1.1625 2.4117 7 6 2.6354 -0.7081 3.5521 8 1 2.9841 -1.7280 3.4823 9 6 2.6505 -0.0459 4.7861 10 7 2.3501 1.2242 4.8495 11 14 3.1077 -0.9763 6.3400 12 1 4.5536 -0.7888 6.6220 13 1 2.3097 -0.4581 7.4801 14 1 2.8233 -2.4218 6.1532 15 6 2.0401 -0.7212 -1.2492 16 1 3.1255 -0.8107 -1.2045 17 6 1.6369 0.0671 -2.5028 18 8 2.1169 -0.6409 -3.6510 19 6 1.8934 -1.9832 -3.6796 20 6 1.9968 -2.6652 -4.8829 21 6 1.7757 -4.0287 -4.9271 22 6 1.4515 -4.7166 -3.7726 23 6 1.3453 -4.0428 -2.5707 24 6 1.5648 -2.6742 -2.5195 25 8 1.4508 -2.0234 -1.3296 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 2.2491 -1.6318 1.1526 30 1 2.3609 1.6831 5.7041 31 1 0.5513 0.1518 -2.5505 32 1 2.0821 1.0615 -2.4706 33 1 2.2505 -2.1303 -5.7860 34 1 1.8571 -4.5578 -5.8651 35 1 1.2806 -5.7824 -3.8101 36 1 1.0916 -4.5826 -1.6703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000242647.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:48 Heat of formation + Delta-G solvation = -88.327371 kcal Electronic energy + Delta-G solvation = -21313.866034 eV Core-core repulsion = 17956.584436 eV Total energy + Delta-G solvation = -3357.281598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.30790 -38.24853 -37.42127 -36.97498 -34.38188 -32.45461 -31.05487 -30.65903 -29.30809 -27.76605 -26.20570 -24.94484 -22.89242 -22.17894 -20.21376 -19.65348 -18.50073 -17.57317 -17.29905 -16.68583 -15.45164 -15.37830 -15.12976 -14.83784 -14.38330 -14.38194 -14.09494 -13.88885 -13.73132 -13.09698 -12.90802 -12.37476 -12.14441 -11.98712 -11.71635 -11.62409 -11.23650 -11.07470 -10.96849 -10.74515 -10.58292 -10.50116 -10.35328 -10.19550 -8.87024 -8.70455 -8.07956 -7.67726 -7.59206 -6.22681 -4.66339 1.22485 1.26448 3.02181 3.12533 3.20273 3.22326 3.24382 3.66895 4.03879 4.19230 4.52865 4.56954 4.80438 4.82769 4.91745 5.04294 5.14822 5.20483 5.33562 5.35766 5.49243 5.67564 5.80178 5.85710 6.03360 6.08170 6.12869 6.15418 6.37566 6.47267 6.56990 6.80456 6.94494 7.41639 7.44249 7.89184 8.03460 8.30592 9.00230 9.48472 10.55741 10.73816 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.004037 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.930695 B = 6934.831121 C = 7565.031765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 H 0.096 0.904 4 N -0.759 5.759 5 C 0.556 3.444 6 O -0.581 6.581 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.907 3.093 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.047 3.953 16 H 0.088 0.912 17 C 0.027 3.973 18 O -0.309 6.309 19 C 0.047 3.953 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.117 4.117 24 C 0.060 3.940 25 O -0.294 6.294 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.385 0.615 30 H 0.268 0.732 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.606 -8.584 -16.633 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 H 0.114 0.886 4 N -0.414 5.414 5 C 0.360 3.640 6 O -0.464 6.464 7 C -0.582 4.582 8 H 0.086 0.914 9 C -0.131 4.131 10 N -0.396 5.396 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.188 1.188 15 C -0.010 4.010 16 H 0.106 0.894 17 C -0.049 4.049 18 O -0.223 6.223 19 C 0.001 3.999 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.136 4.136 23 C -0.136 4.136 24 C 0.014 3.986 25 O -0.208 6.208 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.217 0.783 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.835 -7.455 -16.421 18.127 hybrid contribution 0.333 -0.772 0.826 1.178 sum -1.503 -8.227 -15.595 17.696 Atomic orbital electron populations 1.22196 0.96047 1.02054 1.01603 1.20455 0.94143 0.96421 0.83019 0.88599 1.46174 1.73046 1.13125 1.09047 1.18228 0.77906 0.86326 0.81493 1.90591 1.55356 1.16270 1.84195 1.20872 1.45369 1.00119 0.91802 0.91390 1.25696 0.93016 0.94401 1.00035 1.70023 1.34931 1.08806 1.25818 0.86367 0.78854 0.80541 0.81081 1.19830 1.20384 1.18819 1.23637 0.98523 0.81990 0.96895 0.89371 1.23753 1.01010 0.96318 0.83772 1.86285 1.76481 1.16618 1.42941 1.18984 1.03648 0.83581 0.93639 1.20413 1.03412 0.94366 0.95363 1.20857 1.01464 0.93228 0.98692 1.20893 1.01008 0.99951 0.91797 1.20499 1.03169 0.90546 0.99355 1.19050 1.02421 0.92539 0.84561 1.86387 1.74186 1.30563 1.29681 0.91314 0.93411 0.92281 0.78308 0.92108 0.89947 0.85761 0.85113 0.85389 0.85313 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.04 37.16 0.34 -2.46 16 2 C 0.17 3.06 2.47 -67.93 -0.17 2.89 16 3 H 0.10 1.88 7.58 -51.93 -0.39 1.49 16 4 N -0.76 -16.78 5.06 -55.22 -0.28 -17.06 16 5 C 0.56 15.51 7.71 -12.99 -0.10 15.41 16 6 O -0.58 -18.23 14.71 5.20 0.08 -18.16 16 7 C -0.54 -15.31 9.53 -35.63 -0.34 -15.65 16 8 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 9 C 0.09 2.45 5.49 -17.37 -0.10 2.36 16 10 N -0.77 -22.77 11.86 55.55 0.66 -22.12 16 11 Si 0.91 20.08 29.56 -169.99 -5.03 15.05 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 15 C 0.05 0.71 2.85 -26.49 -0.08 0.64 16 16 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 17 C 0.03 0.35 6.31 37.40 0.24 0.59 16 18 O -0.31 -4.33 10.42 -32.86 -0.34 -4.68 16 19 C 0.05 0.65 6.49 -39.14 -0.25 0.39 16 20 C -0.12 -1.34 9.96 -39.43 -0.39 -1.73 16 21 C -0.12 -1.21 10.04 -39.59 -0.40 -1.61 16 22 C -0.12 -1.19 10.04 -39.59 -0.40 -1.59 16 23 C -0.12 -1.44 9.96 -39.42 -0.39 -1.84 16 24 C 0.06 0.87 6.49 -39.14 -0.25 0.61 16 25 O -0.29 -4.65 8.96 -32.87 -0.29 -4.95 16 26 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.05 0.68 6.58 -51.93 -0.34 0.34 16 28 H 0.06 1.02 7.54 -51.93 -0.39 0.63 16 29 H 0.38 7.90 8.41 -40.82 -0.34 7.56 16 30 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 31 H 0.08 1.02 6.60 -51.93 -0.34 0.67 16 32 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 307.79 15.07 4.64 4.64 Total: -1.00 -33.78 307.79 -7.18 -40.97 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.32 Total: 8.28 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.30 Total: -1.98 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.38 Total: -39.18 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.56 Total: -27.78 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.78 -7.18 -40.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000242647.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.361 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds