Wall clock time and date at job start Mon Mar 30 2020 01:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47066 * 2 1 4 4 N 1.46496 * 109.47053 * 120.00109 * 2 1 3 5 5 C 1.34781 * 119.99970 * 275.00346 * 4 2 1 6 6 O 1.21683 * 119.99847 * 359.97438 * 5 4 2 7 7 C 1.46370 * 120.00033 * 180.02562 * 5 4 2 8 8 H 1.08003 * 119.99974 * 5.99810 * 7 5 4 9 9 C 1.40052 * 120.00265 * 186.00354 * 7 5 4 10 10 N 1.30670 * 119.99365 * 353.48697 * 9 7 5 11 11 Si 1.86795 * 120.00237 * 173.76752 * 9 7 5 12 12 H 1.48502 * 109.47353 * 94.97906 * 11 9 7 13 13 H 1.48505 * 109.47172 * 214.97963 * 11 9 7 14 14 H 1.48496 * 109.47184 * 334.97936 * 11 9 7 15 15 C 1.52996 * 109.47471 * 240.00231 * 2 1 3 16 16 H 1.08997 * 109.70659 * 185.58931 * 15 2 1 17 17 C 1.53477 * 109.71063 * 64.99668 * 15 2 1 18 18 O 1.43179 * 108.23941 * 180.58228 * 17 15 2 19 19 C 1.36102 * 116.70739 * 46.23114 * 18 17 15 20 20 C 1.38702 * 119.39950 * 162.74197 * 19 18 17 21 21 C 1.38194 * 120.06567 * 179.85129 * 20 19 18 22 22 C 1.38251 * 120.11529 * 359.97438 * 21 20 19 23 23 C 1.38199 * 120.11089 * 0.10288 * 22 21 20 24 24 C 1.38701 * 120.06523 * 359.95600 * 23 22 21 25 25 O 1.36106 * 119.39209 * 179.71361 * 24 23 22 26 26 H 1.08992 * 109.47270 * 300.00106 * 1 2 3 27 27 H 1.09001 * 109.46488 * 60.00279 * 1 2 3 28 28 H 1.08992 * 109.46917 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00359 * 95.00032 * 4 2 1 30 30 H 0.97005 * 119.99817 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.70834 * 300.27096 * 17 15 2 32 32 H 1.09000 * 109.70116 * 60.85144 * 17 15 2 33 33 H 1.07993 * 119.96426 * 359.86591 * 20 19 18 34 34 H 1.08000 * 119.94316 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.94454 * 180.08348 * 22 21 20 36 36 H 1.08002 * 119.95953 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8580 1.1625 2.4117 7 6 2.6354 -0.7081 3.5521 8 1 2.9841 -1.7280 3.4823 9 6 2.6505 -0.0459 4.7861 10 7 2.3501 1.2242 4.8495 11 14 3.1077 -0.9763 6.3400 12 1 4.5536 -0.7888 6.6220 13 1 2.3097 -0.4581 7.4801 14 1 2.8233 -2.4218 6.1532 15 6 2.0401 -0.7212 -1.2492 16 1 3.1255 -0.8107 -1.2045 17 6 1.6369 0.0671 -2.5028 18 8 2.1169 -0.6409 -3.6510 19 6 1.8934 -1.9832 -3.6796 20 6 1.9968 -2.6652 -4.8829 21 6 1.7757 -4.0287 -4.9271 22 6 1.4515 -4.7166 -3.7726 23 6 1.3453 -4.0428 -2.5707 24 6 1.5648 -2.6742 -2.5195 25 8 1.4508 -2.0234 -1.3296 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 2.2491 -1.6318 1.1526 30 1 2.3609 1.6831 5.7041 31 1 0.5513 0.1518 -2.5505 32 1 2.0821 1.0615 -2.4706 33 1 2.2505 -2.1303 -5.7860 34 1 1.8571 -4.5578 -5.8651 35 1 1.2806 -5.7824 -3.8101 36 1 1.0916 -4.5826 -1.6703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000242647.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:48 Heat of formation + Delta-G solvation = -112.035313 kcal Electronic energy + Delta-G solvation = -21314.894088 eV Core-core repulsion = 17956.584436 eV Total energy + Delta-G solvation = -3358.309652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.36294 -39.77761 -38.63386 -38.26876 -36.05246 -34.56775 -32.61343 -31.58419 -30.52551 -28.99142 -28.22259 -26.15473 -23.90543 -23.44471 -21.71673 -21.17502 -19.65799 -19.35203 -18.41701 -17.87794 -17.46237 -16.63228 -16.27063 -15.97628 -15.84569 -15.68525 -15.44334 -15.03363 -14.82409 -14.53709 -14.48952 -14.26026 -13.56901 -13.16150 -13.04547 -12.84049 -12.76430 -12.68604 -12.61623 -12.23582 -12.06327 -11.99545 -11.88057 -11.43834 -10.93678 -9.88036 -9.60936 -9.54751 -9.05003 -8.31733 -6.86586 0.33740 0.35769 1.39188 1.40251 1.56329 1.96242 2.18170 2.23666 2.45881 2.77942 2.83620 3.35322 3.51580 3.59004 3.68540 3.75897 4.11857 4.16691 4.23495 4.32712 4.38926 4.48226 4.53386 4.59844 4.73370 4.90645 4.95957 5.21666 5.25390 5.29466 5.31564 5.54456 5.75623 5.85765 5.92079 6.16768 6.25380 6.42037 6.85744 7.49016 8.46202 8.64858 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.004037 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.930695 B = 6934.831121 C = 7565.031765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.165 3.835 3 H 0.081 0.919 4 N -0.749 5.749 5 C 0.543 3.457 6 O -0.626 6.626 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.032 3.968 10 N -0.819 5.819 11 Si 0.996 3.004 12 H -0.262 1.262 13 H -0.271 1.271 14 H -0.251 1.251 15 C 0.059 3.941 16 H 0.080 0.920 17 C 0.032 3.968 18 O -0.316 6.316 19 C 0.022 3.978 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.129 4.129 24 C 0.029 3.971 25 O -0.311 6.311 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.393 0.607 30 H 0.275 0.725 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 -10.961 -17.978 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.059 3.941 3 H 0.099 0.901 4 N -0.403 5.403 5 C 0.347 3.653 6 O -0.513 6.513 7 C -0.612 4.612 8 H 0.101 0.899 9 C -0.184 4.184 10 N -0.448 5.448 11 Si 0.815 3.185 12 H -0.186 1.186 13 H -0.196 1.196 14 H -0.174 1.174 15 C 0.001 3.999 16 H 0.098 0.902 17 C -0.044 4.044 18 O -0.231 6.231 19 C -0.022 4.022 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.148 4.148 24 C -0.016 4.016 25 O -0.226 6.226 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.226 0.774 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.613 -9.874 -17.826 20.441 hybrid contribution 0.248 -0.129 1.080 1.116 sum -1.365 -10.003 -16.746 19.554 Atomic orbital electron populations 1.22065 0.95143 1.02029 1.01528 1.20540 0.94770 0.95819 0.82975 0.90120 1.45866 1.72079 1.13332 1.09018 1.18512 0.77679 0.85986 0.83099 1.90545 1.57291 1.18101 1.85358 1.21407 1.46050 1.01013 0.92779 0.89898 1.26918 0.92143 0.95250 1.04078 1.70172 1.36176 1.11087 1.27352 0.85039 0.78876 0.79179 0.75418 1.18649 1.19610 1.17440 1.23299 0.97788 0.82535 0.96246 0.90203 1.23787 1.01642 0.96587 0.82378 1.86268 1.76892 1.17062 1.42848 1.19321 1.04928 0.83552 0.94447 1.20785 1.02869 0.95315 0.95096 1.21330 0.99156 0.92580 1.00059 1.21316 0.99280 1.01482 0.90864 1.20772 1.03367 0.89944 1.00709 1.19372 1.04630 0.93435 0.84184 1.86323 1.74646 1.30587 1.31066 0.94834 0.89933 0.92180 0.77377 0.91506 0.89183 0.83867 0.83446 0.81761 0.82105 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.04 71.98 0.65 -4.67 16 2 C 0.16 6.25 2.47 44.99 0.11 6.36 16 3 H 0.08 3.32 7.58 -2.38 -0.02 3.30 16 4 N -0.75 -34.30 5.06 -446.83 -2.26 -36.56 16 5 C 0.54 31.47 7.71 86.36 0.67 32.13 16 6 O -0.63 -41.19 14.71 -4.29 -0.06 -41.25 16 7 C -0.58 -33.02 9.53 24.83 0.24 -32.78 16 8 H 0.08 4.33 7.86 -2.91 -0.02 4.31 16 9 C 0.03 1.77 5.49 85.31 0.47 2.24 16 10 N -0.82 -49.98 11.86 21.84 0.26 -49.72 16 11 Si 1.00 41.23 29.56 68.60 2.03 43.26 16 12 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 13 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 14 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 15 C 0.06 1.81 2.85 30.75 0.09 1.90 16 16 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 17 C 0.03 0.80 6.31 72.14 0.46 1.26 16 18 O -0.32 -8.58 10.42 -82.48 -0.86 -9.44 16 19 C 0.02 0.59 6.49 22.56 0.15 0.74 16 20 C -0.12 -2.49 9.96 22.37 0.22 -2.27 16 21 C -0.11 -1.78 10.04 22.26 0.22 -1.56 16 22 C -0.11 -1.88 10.04 22.26 0.22 -1.66 16 23 C -0.13 -3.00 9.96 22.37 0.22 -2.78 16 24 C 0.03 0.81 6.49 22.56 0.15 0.95 16 25 O -0.31 -9.89 8.96 -82.53 -0.74 -10.63 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 2.33 6.58 -2.39 -0.02 2.31 16 28 H 0.06 2.11 7.54 -2.39 -0.02 2.09 16 29 H 0.39 16.57 8.41 -92.71 -0.78 15.79 16 30 H 0.28 15.17 8.29 -92.70 -0.77 14.41 16 31 H 0.09 2.12 6.60 -2.39 -0.02 2.10 16 32 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -76.25 307.79 2.55 -73.70 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.33 Total: 30.78 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 3.86 Total: -0.13 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.00 Total: -86.28 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -1.66 Total: -61.33 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -76.25 2.55 -73.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000242647.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.339 kcal (2) G-P(sol) polarization free energy of solvation -76.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds