Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36005 * 117.00182 * 2 1 4 4 C 1.38668 * 120.04034 * 0.02562 * 3 2 1 5 5 C 1.38234 * 120.08603 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.90754 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47558 * 359.97438 * 6 5 4 8 8 C 1.47202 * 109.47294 * 119.99669 * 6 5 4 9 9 N 6.62474 * 91.90677 * 18.76084 * 2 1 3 10 10 C 1.50701 * 109.47009 * 239.99572 * 6 5 4 11 11 H 1.08001 * 119.99614 * 0.02562 * 10 6 5 12 12 C 1.37881 * 120.00356 * 180.02562 * 10 6 5 13 13 N 1.31516 * 119.99714 * 0.02562 * 12 10 6 14 14 Si 1.86798 * 120.00245 * 180.02562 * 12 10 6 15 15 H 1.48493 * 109.47102 * 59.99787 * 14 12 10 16 16 H 1.48491 * 109.46918 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46785 * 299.99965 * 14 12 10 18 18 C 1.38220 * 120.17876 * 0.02562 * 5 4 3 19 19 C 1.38669 * 120.09095 * 359.97438 * 18 5 4 20 20 O 1.36000 * 120.04204 * 180.02562 * 19 18 5 21 21 C 1.42897 * 117.00329 * 359.97438 * 20 19 18 22 22 C 1.38973 * 120.04785 * 179.72388 * 3 2 1 23 23 O 1.36097 * 120.08778 * 359.97438 * 22 3 2 24 24 C 1.42908 * 117.00066 * 89.99690 * 23 22 3 25 25 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47220 * 299.99844 * 1 2 3 27 27 H 1.08996 * 109.47672 * 59.99788 * 1 2 3 28 28 H 1.08000 * 119.95770 * 0.02562 * 4 3 2 29 29 H 0.96994 * 119.99911 * 179.97438 * 13 12 10 30 30 H 1.08006 * 119.95474 * 179.97438 * 18 5 4 31 31 H 1.09005 * 109.47083 * 180.02562 * 21 20 19 32 32 H 1.09000 * 109.47309 * 300.00542 * 21 20 19 33 33 H 1.08996 * 109.47192 * 60.00519 * 21 20 19 34 34 H 1.08993 * 109.47036 * 179.97438 * 24 23 22 35 35 H 1.08997 * 109.47176 * 300.00083 * 24 23 22 36 36 H 1.09005 * 109.46752 * 60.00020 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0005 5 6 1.9186 3.6075 0.0000 6 6 1.0949 4.8694 0.0000 7 1 0.0357 4.6119 0.0000 8 6 1.4081 5.6598 1.2016 9 7 1.6493 6.2693 2.1295 10 6 1.4148 5.6781 -1.2307 11 1 2.1416 5.3143 -1.9420 12 6 0.7797 6.8823 -1.4488 13 7 -0.1050 7.3254 -0.5824 14 14 1.1757 7.8843 -2.9747 15 1 0.8587 7.0869 -4.1866 16 1 0.3650 9.1284 -2.9740 17 1 2.6189 8.2345 -2.9761 18 6 3.2987 3.6852 -0.0016 19 6 4.0603 2.5263 -0.0021 20 8 5.4180 2.6040 -0.0032 21 6 5.9931 3.9121 -0.0043 22 6 3.4342 1.2856 0.0058 23 8 4.1780 0.1460 0.0120 24 6 4.5381 -0.4007 -1.2583 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2135 2.3188 0.0014 29 1 -0.5516 8.1727 -0.7356 30 1 3.7845 4.6498 -0.0024 31 1 7.0802 3.8311 -0.0055 32 1 5.6683 4.4511 -0.8942 33 1 5.6697 4.4519 0.8857 34 1 5.1285 -1.3049 -1.1106 35 1 3.6352 -0.6434 -1.8186 36 1 5.1257 0.3296 -1.8147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000398623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = -62.953748 kcal Electronic energy + Delta-G solvation = -21531.012776 eV Core-core repulsion = 18174.831461 eV Total energy + Delta-G solvation = -3356.181316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46888 -38.71267 -37.49129 -36.89980 -34.92565 -33.12508 -31.10022 -29.29120 -28.23251 -27.58441 -26.91138 -25.66997 -23.79288 -21.64705 -21.32697 -18.33991 -17.42788 -17.02942 -16.88107 -16.26361 -15.93005 -15.28137 -15.08691 -14.93047 -14.75153 -14.37869 -14.29871 -13.81269 -13.13087 -12.84255 -12.53117 -12.25419 -11.82412 -11.68690 -11.64437 -11.46200 -11.32309 -11.27643 -11.16594 -11.04703 -10.76889 -10.60597 -10.21470 -9.87579 -9.67249 -9.48100 -8.78335 -7.80237 -7.77456 -6.37589 -4.49930 1.59651 1.76785 3.08156 3.16416 3.22760 3.23721 3.80879 3.88595 4.12535 4.20596 4.31378 4.35155 4.96472 5.17082 5.24454 5.31881 5.38397 5.41770 5.44187 5.50223 5.55914 5.58339 5.63969 5.66457 5.73056 5.80796 5.89116 6.02209 6.53888 6.61465 6.70969 6.78032 7.25814 7.32151 7.52504 7.58180 7.74653 8.01456 8.52597 9.10494 9.20509 10.69892 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.006066 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.195688 B = 4614.738966 C = 5184.714824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.144 3.856 4 C -0.228 4.228 5 C 0.034 3.966 6 C 0.163 3.837 7 H 0.080 0.920 8 C 0.265 3.735 9 N -0.511 5.511 10 C -0.524 4.524 11 H 0.076 0.924 12 C 0.068 3.932 13 N -0.874 5.874 14 Si 0.905 3.095 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.213 4.213 19 C 0.143 3.857 20 O -0.309 6.309 21 C 0.025 3.975 22 C 0.010 3.990 23 O -0.314 6.314 24 C 0.035 3.965 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.136 0.864 29 H 0.271 0.729 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -12.269 -3.178 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.098 3.902 4 C -0.247 4.247 5 C 0.033 3.967 6 C 0.141 3.859 7 H 0.097 0.903 8 C -0.051 4.051 9 N -0.189 5.189 10 C -0.562 4.562 11 H 0.094 0.906 12 C -0.138 4.138 13 N -0.509 5.509 14 Si 0.732 3.268 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.232 4.232 19 C 0.097 3.903 20 O -0.222 6.222 21 C -0.070 4.070 22 C -0.035 4.035 23 O -0.230 6.230 24 C -0.059 4.059 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.089 -11.638 -1.577 12.800 hybrid contribution -0.374 1.063 -1.459 1.844 sum 4.715 -10.576 -3.036 11.970 Atomic orbital electron populations 1.23085 0.78502 1.03503 1.01920 1.86084 1.21162 1.26300 1.88631 1.18856 0.90436 0.84700 0.96220 1.21001 1.00252 0.90834 1.12596 1.19635 0.92941 0.94296 0.89862 1.15631 0.96473 0.86391 0.87404 0.90294 1.29875 0.90771 0.92251 0.92228 1.80856 1.11782 1.11865 1.14397 1.20819 1.26003 1.04837 1.04528 0.90592 1.25101 0.94212 0.97432 0.97029 1.69900 1.24947 1.20983 1.35047 0.86413 0.78716 0.79245 0.82429 1.19592 1.20998 1.19888 1.21044 0.94406 0.97095 1.10669 1.18951 0.82671 0.92669 0.95972 1.86066 1.17007 1.30567 1.88538 1.23094 0.98585 0.83192 1.02146 1.16818 0.86265 0.84311 1.16117 1.86147 1.70240 1.38250 1.28401 1.22919 0.99238 0.98086 0.85706 0.88568 0.92397 0.92304 0.84648 0.91925 0.84488 0.88523 0.92171 0.92416 0.89675 0.93990 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.73 10.28 -34.34 -0.35 -5.09 16 3 C 0.14 2.48 6.70 -39.15 -0.26 2.21 16 4 C -0.23 -3.96 8.66 -39.42 -0.34 -4.30 16 5 C 0.03 0.67 4.71 -104.63 -0.49 0.18 16 6 C 0.16 3.66 2.36 -95.71 -0.23 3.44 16 7 H 0.08 1.78 7.87 -51.93 -0.41 1.37 16 8 C 0.26 6.55 12.98 -20.76 -0.27 6.28 16 9 N -0.51 -13.31 18.54 42.15 0.78 -12.53 16 10 C -0.52 -12.67 8.21 -34.44 -0.28 -12.96 16 11 H 0.08 1.78 7.60 -52.49 -0.40 1.38 16 12 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 13 N -0.87 -23.42 12.37 55.43 0.69 -22.74 16 14 Si 0.91 19.62 29.54 -169.99 -5.02 14.60 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 C -0.21 -4.06 7.78 -39.43 -0.31 -4.36 16 19 C 0.14 2.60 6.70 -39.15 -0.26 2.34 16 20 O -0.31 -5.13 10.28 -34.32 -0.35 -5.48 16 21 C 0.02 0.33 9.81 101.05 0.99 1.32 16 22 C 0.01 0.18 5.75 -39.04 -0.22 -0.04 16 23 O -0.31 -5.47 9.99 -45.30 -0.45 -5.92 16 24 C 0.04 0.47 11.13 101.05 1.13 1.60 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 27 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 28 H 0.14 2.05 6.17 -52.49 -0.32 1.73 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.14 2.62 6.27 -52.48 -0.33 2.29 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 33 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -30.30 319.79 -3.85 -34.15 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.30 Total: -0.41 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 0.35 Total: -1.40 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 1.47 Total: -35.27 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.16 Total: -16.49 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.30 -3.85 -34.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000398623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.805 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds