Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36005 * 117.00182 * 2 1 4 4 C 1.38668 * 120.04034 * 0.02562 * 3 2 1 5 5 C 1.38234 * 120.08603 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.90754 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47558 * 359.97438 * 6 5 4 8 8 C 1.47202 * 109.47294 * 119.99669 * 6 5 4 9 9 N 6.62474 * 91.90677 * 18.76084 * 2 1 3 10 10 C 1.50701 * 109.47009 * 239.99572 * 6 5 4 11 11 H 1.08001 * 119.99614 * 0.02562 * 10 6 5 12 12 C 1.37881 * 120.00356 * 180.02562 * 10 6 5 13 13 N 1.31516 * 119.99714 * 0.02562 * 12 10 6 14 14 Si 1.86798 * 120.00245 * 180.02562 * 12 10 6 15 15 H 1.48493 * 109.47102 * 59.99787 * 14 12 10 16 16 H 1.48491 * 109.46918 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46785 * 299.99965 * 14 12 10 18 18 C 1.38220 * 120.17876 * 0.02562 * 5 4 3 19 19 C 1.38669 * 120.09095 * 359.97438 * 18 5 4 20 20 O 1.36000 * 120.04204 * 180.02562 * 19 18 5 21 21 C 1.42897 * 117.00329 * 359.97438 * 20 19 18 22 22 C 1.38973 * 120.04785 * 179.72388 * 3 2 1 23 23 O 1.36097 * 120.08778 * 359.97438 * 22 3 2 24 24 C 1.42908 * 117.00066 * 89.99690 * 23 22 3 25 25 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47220 * 299.99844 * 1 2 3 27 27 H 1.08996 * 109.47672 * 59.99788 * 1 2 3 28 28 H 1.08000 * 119.95770 * 0.02562 * 4 3 2 29 29 H 0.96994 * 119.99911 * 179.97438 * 13 12 10 30 30 H 1.08006 * 119.95474 * 179.97438 * 18 5 4 31 31 H 1.09005 * 109.47083 * 180.02562 * 21 20 19 32 32 H 1.09000 * 109.47309 * 300.00542 * 21 20 19 33 33 H 1.08996 * 109.47192 * 60.00519 * 21 20 19 34 34 H 1.08993 * 109.47036 * 179.97438 * 24 23 22 35 35 H 1.08997 * 109.47176 * 300.00083 * 24 23 22 36 36 H 1.09005 * 109.46752 * 60.00020 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0005 5 6 1.9186 3.6075 0.0000 6 6 1.0949 4.8694 0.0000 7 1 0.0357 4.6119 0.0000 8 6 1.4081 5.6598 1.2016 9 7 1.6493 6.2693 2.1295 10 6 1.4148 5.6781 -1.2307 11 1 2.1416 5.3143 -1.9420 12 6 0.7797 6.8823 -1.4488 13 7 -0.1050 7.3254 -0.5824 14 14 1.1757 7.8843 -2.9747 15 1 0.8587 7.0869 -4.1866 16 1 0.3650 9.1284 -2.9740 17 1 2.6189 8.2345 -2.9761 18 6 3.2987 3.6852 -0.0016 19 6 4.0603 2.5263 -0.0021 20 8 5.4180 2.6040 -0.0032 21 6 5.9931 3.9121 -0.0043 22 6 3.4342 1.2856 0.0058 23 8 4.1780 0.1460 0.0120 24 6 4.5381 -0.4007 -1.2583 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2135 2.3188 0.0014 29 1 -0.5516 8.1727 -0.7356 30 1 3.7845 4.6498 -0.0024 31 1 7.0802 3.8311 -0.0055 32 1 5.6683 4.4511 -0.8942 33 1 5.6697 4.4519 0.8857 34 1 5.1285 -1.3049 -1.1106 35 1 3.6352 -0.6434 -1.8186 36 1 5.1257 0.3296 -1.8147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000398623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = -80.845974 kcal Electronic energy + Delta-G solvation = -21531.788641 eV Core-core repulsion = 18174.831461 eV Total energy + Delta-G solvation = -3356.957181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77875 -39.91514 -38.80780 -38.37228 -36.66723 -35.00491 -32.69359 -30.60745 -29.68176 -28.67270 -27.95229 -27.02948 -25.50680 -22.92809 -22.75385 -19.74250 -19.19818 -18.37943 -18.20106 -17.54273 -17.13848 -16.78321 -16.64823 -16.39501 -15.91941 -15.63920 -15.43442 -15.29098 -14.85826 -14.19740 -13.88009 -13.72980 -13.49746 -13.19445 -13.06250 -12.91911 -12.78715 -12.59609 -12.51075 -12.41334 -12.35315 -12.17983 -11.63892 -11.55042 -11.20699 -10.89717 -10.69373 -9.17743 -9.11315 -8.28958 -6.46010 0.19290 0.40409 1.45727 1.46905 1.54670 1.91684 2.24557 2.30034 2.41794 2.51646 2.74715 2.95220 3.08317 3.75352 4.01473 4.07294 4.16958 4.27882 4.36825 4.40776 4.49592 4.49863 4.56226 4.56885 4.59175 4.71533 4.81932 4.85153 5.03064 5.11390 5.22523 5.41150 5.61312 5.71932 5.91095 6.08696 6.30886 6.60951 6.74421 7.15910 7.27401 8.77662 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.006066 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.195688 B = 4614.738966 C = 5184.714824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.317 6.317 3 C 0.148 3.852 4 C -0.223 4.223 5 C 0.017 3.983 6 C 0.163 3.837 7 H 0.078 0.922 8 C 0.272 3.728 9 N -0.542 5.542 10 C -0.524 4.524 11 H 0.081 0.919 12 C 0.023 3.977 13 N -0.910 5.910 14 Si 0.962 3.038 15 H -0.258 1.258 16 H -0.289 1.289 17 H -0.272 1.272 18 C -0.222 4.222 19 C 0.141 3.859 20 O -0.316 6.316 21 C 0.019 3.981 22 C 0.002 3.998 23 O -0.331 6.331 24 C 0.032 3.968 25 H 0.127 0.873 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.156 0.844 29 H 0.268 0.732 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.113 0.887 35 H 0.046 0.954 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -13.696 -4.322 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.230 6.230 3 C 0.101 3.899 4 C -0.242 4.242 5 C 0.015 3.985 6 C 0.142 3.858 7 H 0.096 0.904 8 C -0.043 4.043 9 N -0.221 5.221 10 C -0.563 4.563 11 H 0.099 0.901 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.786 3.214 15 H -0.182 1.182 16 H -0.214 1.214 17 H -0.197 1.197 18 C -0.241 4.241 19 C 0.094 3.906 20 O -0.230 6.230 21 C -0.075 4.075 22 C -0.044 4.044 23 O -0.248 6.248 24 C -0.062 4.062 25 H 0.145 0.855 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.173 0.827 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.065 0.935 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.534 -13.088 -2.733 14.470 hybrid contribution -0.480 1.375 -1.095 1.822 sum 5.055 -11.713 -3.828 13.319 Atomic orbital electron populations 1.23445 0.76159 1.05829 1.02569 1.86088 1.23525 1.25202 1.88182 1.18853 0.90334 0.85296 0.95386 1.21112 1.01283 0.90060 1.11750 1.19426 0.92976 0.93821 0.92231 1.15676 0.96880 0.87286 0.85971 0.90419 1.30396 0.89887 0.91725 0.92284 1.80832 1.12929 1.12905 1.15412 1.21125 1.25393 1.04871 1.04877 0.90054 1.25846 0.94088 0.98560 0.99483 1.70013 1.26364 1.21355 1.36872 0.85521 0.78299 0.77762 0.79771 1.18220 1.21439 1.19682 1.20964 0.94329 0.97235 1.11547 1.18978 0.83327 0.92439 0.95846 1.86059 1.16176 1.32402 1.88317 1.23347 1.00375 0.81906 1.01872 1.17065 0.86936 0.84647 1.15710 1.86093 1.70233 1.37899 1.30584 1.23130 0.99836 0.98953 0.84318 0.85529 0.91879 0.91479 0.82699 0.92264 0.85271 0.85108 0.92053 0.93080 0.86907 0.93540 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 16 2 O -0.32 -9.04 10.28 -79.66 -0.82 -9.86 16 3 C 0.15 4.88 6.70 22.55 0.15 5.04 16 4 C -0.22 -7.51 8.66 22.37 0.19 -7.32 16 5 C 0.02 0.67 4.71 -19.87 -0.09 0.57 16 6 C 0.16 7.38 2.36 -14.09 -0.03 7.35 16 7 H 0.08 3.52 7.87 -2.39 -0.02 3.50 16 8 C 0.27 13.63 12.98 89.44 1.16 14.80 16 9 N -0.54 -28.64 18.54 20.01 0.37 -28.27 16 10 C -0.52 -25.23 8.21 25.60 0.21 -25.02 16 11 H 0.08 3.76 7.60 -2.91 -0.02 3.74 16 12 C 0.02 1.12 5.30 84.66 0.45 1.57 16 13 N -0.91 -49.11 12.37 21.45 0.27 -48.85 16 14 Si 0.96 39.78 29.54 68.60 2.03 41.81 16 15 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 16 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 18 C -0.22 -8.42 7.78 22.37 0.17 -8.25 16 19 C 0.14 5.02 6.70 22.55 0.15 5.17 16 20 O -0.32 -10.22 10.28 -79.62 -0.82 -11.04 16 21 C 0.02 0.48 9.81 113.37 1.11 1.60 16 22 C 0.00 0.05 5.75 22.62 0.13 0.18 16 23 O -0.33 -11.03 9.99 -70.50 -0.70 -11.74 16 24 C 0.03 0.78 11.13 113.37 1.26 2.05 16 25 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.06 1.16 7.66 -2.39 -0.02 1.15 16 27 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 28 H 0.16 4.45 6.17 -2.91 -0.02 4.43 16 29 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.13 5.00 6.27 -2.91 -0.02 4.98 16 31 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.06 1.52 7.66 -2.39 -0.02 1.50 16 33 H 0.05 1.34 7.66 -2.39 -0.02 1.33 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -64.12 319.79 7.40 -56.72 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.10 Total: 12.12 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.98 Total: -0.88 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: 0.64 Total: -77.12 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -2.34 Total: -32.64 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -64.12 7.40 -56.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000398623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.127 kcal (2) G-P(sol) polarization free energy of solvation -64.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds