Wall clock time and date at job start Mon Mar 30 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 119.99666 * 2 1 4 4 N 1.34776 * 120.00326 * 180.02562 * 2 1 3 5 5 C 1.46495 * 119.99844 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46950 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47058 * 179.97438 * 6 5 4 8 8 C 1.36466 * 119.97923 * 265.01956 * 7 6 5 9 9 C 1.39152 * 120.44168 * 179.97438 * 8 7 6 10 10 C 1.40018 * 120.19192 * 0.02562 * 9 8 7 11 11 C 1.37747 * 119.97843 * 359.70115 * 10 9 8 12 12 C 1.40819 * 119.97624 * 85.00634 * 7 6 5 13 13 C 1.41196 * 120.17791 * 0.02562 * 12 7 6 14 14 H 1.08001 * 120.00032 * 334.07965 * 13 12 7 15 15 C 1.39865 * 120.00159 * 154.07371 * 13 12 7 16 16 N 1.30892 * 120.00167 * 334.76907 * 15 13 12 17 17 Si 1.86803 * 120.00120 * 154.76963 * 15 13 12 18 18 H 1.48505 * 109.47039 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47122 * 300.00243 * 17 15 13 20 20 H 1.48496 * 109.47231 * 60.00467 * 17 15 13 21 21 O 1.36491 * 108.54228 * 180.02562 * 10 9 8 22 22 C 1.43970 * 105.45452 * 342.65648 * 21 10 9 23 23 O 1.36324 * 131.32196 * 180.02562 * 9 8 7 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47726 * 300.00032 * 1 2 3 26 26 H 1.08998 * 109.47265 * 59.99999 * 1 2 3 27 27 H 0.97000 * 119.99725 * 359.97438 * 4 2 1 28 28 H 1.09002 * 109.47508 * 59.99728 * 5 4 2 29 29 H 1.08994 * 109.47397 * 299.99676 * 5 4 2 30 30 H 1.09002 * 109.46964 * 59.99729 * 6 5 4 31 31 H 1.08994 * 109.47079 * 300.00206 * 6 5 4 32 32 H 1.07997 * 119.77548 * 0.02562 * 8 7 6 33 33 H 1.08000 * 120.15377 * 180.31369 * 11 10 9 34 34 H 0.97004 * 119.99769 * 354.25901 * 16 15 13 35 35 H 1.08991 * 110.55689 * 268.69393 * 22 21 10 36 36 H 1.09006 * 110.54697 * 145.87195 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1670 0.0000 6 6 4.1560 -2.6095 -0.0001 7 6 5.6630 -2.6094 -0.0001 8 6 6.3448 -2.7119 -1.1778 9 6 7.7363 -2.7123 -1.1891 10 6 8.4502 -2.6077 0.0109 11 6 7.7748 -2.4980 1.2063 12 6 6.3666 -2.5033 1.2150 13 6 5.6639 -2.3974 2.4352 14 1 4.6654 -1.9862 2.4493 15 6 6.2610 -2.8250 3.6255 16 7 7.1994 -3.7371 3.5961 17 14 5.7194 -2.0945 5.2572 18 1 6.5009 -2.7110 6.3593 19 1 5.9534 -0.6281 5.2451 20 1 4.2737 -2.3634 5.4644 21 8 9.7848 -2.6313 -0.2746 22 6 9.8822 -3.1621 -1.6093 23 8 8.6281 -2.8011 -2.2163 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6960 -2.0072 -0.0005 28 1 4.0089 -0.6537 0.8905 29 1 4.0096 -0.6527 -0.8894 30 1 3.7930 -3.1232 -0.8903 31 1 3.7923 -3.1236 0.8896 32 1 5.8008 -2.7925 -2.1072 33 1 8.3226 -2.4121 2.1331 34 1 7.4228 -4.1764 2.7606 35 1 9.9960 -4.2457 -1.5829 36 1 10.7132 -2.7020 -2.1442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001019668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:21 Heat of formation + Delta-G solvation = -100.250269 kcal Electronic energy + Delta-G solvation = -21180.331127 eV Core-core repulsion = 17822.532513 eV Total energy + Delta-G solvation = -3357.798614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97385 -39.32613 -37.57207 -35.28514 -34.86244 -33.72725 -31.67208 -29.73137 -29.22430 -27.21653 -25.76981 -24.33551 -22.63201 -21.51310 -20.66915 -20.18435 -18.40113 -16.79950 -16.53540 -16.45838 -16.01730 -15.67922 -15.32705 -15.05790 -14.27169 -14.03792 -13.60879 -13.40294 -13.18430 -12.75092 -12.67039 -12.48859 -12.38122 -12.01565 -11.99966 -11.80553 -11.38264 -11.29373 -11.12527 -10.71265 -10.48717 -10.11816 -9.83977 -9.65078 -9.56180 -9.03074 -8.77052 -7.75878 -7.44528 -7.00328 -4.58986 2.41414 2.54388 2.82998 3.08385 3.15809 3.30046 3.51101 3.78405 3.91532 4.37243 4.39780 4.94386 5.12123 5.15923 5.32360 5.37028 5.49525 5.62855 5.69366 5.74191 5.83025 5.91967 6.22396 6.24669 6.35577 6.50621 6.59039 6.77150 6.85104 6.94264 7.25431 7.39976 7.46562 7.60168 7.72864 7.78509 7.92219 8.18708 8.43116 8.53273 8.66440 9.88496 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.006699 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.228405 B = 4178.707732 C = 6164.930577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.503 3.497 3 O -0.552 6.552 4 N -0.727 5.727 5 C 0.119 3.881 6 C -0.054 4.054 7 C -0.199 4.199 8 C -0.040 4.040 9 C -0.125 4.125 10 C 0.072 3.928 11 C -0.204 4.204 12 C 0.117 3.883 13 C -0.502 4.502 14 H 0.086 0.914 15 C 0.038 3.962 16 N -0.785 5.785 17 Si 1.061 2.939 18 H -0.273 1.273 19 H -0.272 1.272 20 H -0.274 1.274 21 O -0.326 6.326 22 C 0.217 3.783 23 O -0.324 6.324 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.398 0.602 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.301 0.699 35 H 0.063 0.937 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 -0.812 -3.988 8.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.290 3.710 3 O -0.430 6.430 4 N -0.378 5.378 5 C -0.004 4.004 6 C -0.092 4.092 7 C -0.201 4.201 8 C -0.059 4.059 9 C -0.168 4.168 10 C 0.028 3.972 11 C -0.224 4.224 12 C 0.113 3.887 13 C -0.529 4.529 14 H 0.104 0.896 15 C -0.185 4.185 16 N -0.407 5.407 17 Si 0.884 3.116 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.200 1.200 21 O -0.242 6.242 22 C 0.104 3.896 23 O -0.242 6.242 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.232 0.768 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.733 -0.025 -2.463 7.169 hybrid contribution -0.124 -0.567 -1.873 1.960 sum -6.858 -0.592 -4.336 8.135 Atomic orbital electron populations 1.21838 0.92305 1.03906 1.04922 1.20761 0.90395 0.83804 0.76071 1.90725 1.70812 1.31496 1.49996 1.46275 1.08437 1.08323 1.74807 1.21567 0.77582 0.98580 1.02634 1.20237 0.93038 0.94270 1.01612 1.18769 0.93186 1.15799 0.92332 1.19097 0.88633 1.00887 0.97257 1.19188 0.91441 1.21862 0.84302 1.19684 0.80584 1.01643 0.95305 1.20111 0.93643 1.14987 0.93688 1.17163 0.89754 0.89025 0.92726 1.20518 1.03522 1.36998 0.91895 0.89569 1.27074 0.92773 0.93816 1.04844 1.70488 1.22104 1.14340 1.33794 0.83674 0.76960 0.77197 0.73720 1.19728 1.19726 1.19951 1.87221 1.23244 1.81442 1.32325 1.25169 0.88193 0.97796 0.78424 1.87072 1.18507 1.88075 1.30558 0.90758 0.89003 0.89138 0.76848 0.90671 0.92055 0.92723 0.90521 0.88005 0.86477 0.88541 0.91909 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.39 36.01 0.37 -1.18 16 2 C 0.50 7.37 7.94 -10.99 -0.09 7.29 16 3 O -0.55 -10.91 17.10 5.56 0.10 -10.81 16 4 N -0.73 -10.07 5.56 -60.30 -0.33 -10.40 16 5 C 0.12 2.08 5.54 -4.04 -0.02 2.06 16 6 C -0.05 -0.95 4.79 -27.88 -0.13 -1.08 16 7 C -0.20 -4.34 5.16 -104.29 -0.54 -4.87 16 8 C -0.04 -0.87 9.60 -39.88 -0.38 -1.25 16 9 C -0.13 -2.92 7.18 -38.58 -0.28 -3.20 16 10 C 0.07 1.75 7.13 -39.09 -0.28 1.47 16 11 C -0.20 -5.18 7.95 -38.78 -0.31 -5.49 16 12 C 0.12 2.84 5.28 -106.82 -0.56 2.28 16 13 C -0.50 -12.01 8.01 -37.85 -0.30 -12.32 16 14 H 0.09 1.97 6.12 -52.49 -0.32 1.65 16 15 C 0.04 0.91 4.93 -17.34 -0.09 0.82 16 16 N -0.78 -19.73 12.34 55.54 0.69 -19.04 16 17 Si 1.06 20.49 30.00 -169.99 -5.10 15.39 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 21 O -0.33 -7.30 11.40 -45.65 -0.52 -7.82 16 22 C 0.22 3.93 8.88 101.05 0.90 4.83 16 23 O -0.32 -6.97 11.39 -45.10 -0.51 -7.48 16 24 H 0.07 0.48 7.91 -51.93 -0.41 0.07 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.40 4.13 8.31 -40.82 -0.34 3.79 16 28 H 0.07 1.52 7.28 -51.93 -0.38 1.14 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.83 8.04 -51.93 -0.42 0.42 16 31 H 0.08 1.36 7.04 -51.93 -0.37 1.00 16 32 H 0.10 1.97 8.05 -52.49 -0.42 1.55 16 33 H 0.12 3.09 6.54 -52.49 -0.34 2.75 16 34 H 0.30 7.79 6.70 -40.82 -0.27 7.51 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -30.49 308.60 -6.93 -37.42 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.18 Total: 8.75 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.71 Total: -10.65 kcal Atomic # 7 Polarization: -29.80 SS G_CDS: 0.35 Total: -29.45 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.94 Total: -26.12 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.10 Total: 15.39 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.49 -6.93 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001019668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.828 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds