Wall clock time and date at job start Mon Mar 30 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 119.99666 * 2 1 4 4 N 1.34776 * 120.00326 * 180.02562 * 2 1 3 5 5 C 1.46495 * 119.99844 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46950 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47058 * 179.97438 * 6 5 4 8 8 C 1.36466 * 119.97923 * 265.01956 * 7 6 5 9 9 C 1.39152 * 120.44168 * 179.97438 * 8 7 6 10 10 C 1.40018 * 120.19192 * 0.02562 * 9 8 7 11 11 C 1.37747 * 119.97843 * 359.70115 * 10 9 8 12 12 C 1.40819 * 119.97624 * 85.00634 * 7 6 5 13 13 C 1.41196 * 120.17791 * 0.02562 * 12 7 6 14 14 H 1.08001 * 120.00032 * 334.07965 * 13 12 7 15 15 C 1.39865 * 120.00159 * 154.07371 * 13 12 7 16 16 N 1.30892 * 120.00167 * 334.76907 * 15 13 12 17 17 Si 1.86803 * 120.00120 * 154.76963 * 15 13 12 18 18 H 1.48505 * 109.47039 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47122 * 300.00243 * 17 15 13 20 20 H 1.48496 * 109.47231 * 60.00467 * 17 15 13 21 21 O 1.36491 * 108.54228 * 180.02562 * 10 9 8 22 22 C 1.43970 * 105.45452 * 342.65648 * 21 10 9 23 23 O 1.36324 * 131.32196 * 180.02562 * 9 8 7 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47726 * 300.00032 * 1 2 3 26 26 H 1.08998 * 109.47265 * 59.99999 * 1 2 3 27 27 H 0.97000 * 119.99725 * 359.97438 * 4 2 1 28 28 H 1.09002 * 109.47508 * 59.99728 * 5 4 2 29 29 H 1.08994 * 109.47397 * 299.99676 * 5 4 2 30 30 H 1.09002 * 109.46964 * 59.99729 * 6 5 4 31 31 H 1.08994 * 109.47079 * 300.00206 * 6 5 4 32 32 H 1.07997 * 119.77548 * 0.02562 * 8 7 6 33 33 H 1.08000 * 120.15377 * 180.31369 * 11 10 9 34 34 H 0.97004 * 119.99769 * 354.25901 * 16 15 13 35 35 H 1.08991 * 110.55689 * 268.69393 * 22 21 10 36 36 H 1.09006 * 110.54697 * 145.87195 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1670 0.0000 6 6 4.1560 -2.6095 -0.0001 7 6 5.6630 -2.6094 -0.0001 8 6 6.3448 -2.7119 -1.1778 9 6 7.7363 -2.7123 -1.1891 10 6 8.4502 -2.6077 0.0109 11 6 7.7748 -2.4980 1.2063 12 6 6.3666 -2.5033 1.2150 13 6 5.6639 -2.3974 2.4352 14 1 4.6654 -1.9862 2.4493 15 6 6.2610 -2.8250 3.6255 16 7 7.1994 -3.7371 3.5961 17 14 5.7194 -2.0945 5.2572 18 1 6.5009 -2.7110 6.3593 19 1 5.9534 -0.6281 5.2451 20 1 4.2737 -2.3634 5.4644 21 8 9.7848 -2.6313 -0.2746 22 6 9.8822 -3.1621 -1.6093 23 8 8.6281 -2.8011 -2.2163 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6960 -2.0072 -0.0005 28 1 4.0089 -0.6537 0.8905 29 1 4.0096 -0.6527 -0.8894 30 1 3.7930 -3.1232 -0.8903 31 1 3.7923 -3.1236 0.8896 32 1 5.8008 -2.7925 -2.1072 33 1 8.3226 -2.4121 2.1331 34 1 7.4228 -4.1764 2.7606 35 1 9.9960 -4.2457 -1.5829 36 1 10.7132 -2.7020 -2.1442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001019668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:21 Heat of formation + Delta-G solvation = -121.118329 kcal Electronic energy + Delta-G solvation = -21181.236034 eV Core-core repulsion = 17822.532513 eV Total energy + Delta-G solvation = -3358.703521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.67711 -40.57209 -39.27906 -36.99079 -36.30617 -35.45943 -33.12859 -31.03660 -30.83867 -28.65294 -27.45642 -25.95534 -24.18074 -23.31825 -22.20182 -21.50476 -20.18431 -18.30606 -18.17820 -17.95942 -17.47779 -17.06458 -16.67637 -16.56599 -15.80156 -15.65424 -15.24822 -14.84196 -14.60803 -14.44705 -14.17190 -14.10242 -13.72869 -13.45077 -13.30383 -12.99020 -12.95861 -12.81369 -12.70640 -12.17494 -12.00238 -11.82690 -11.51380 -11.28157 -10.93008 -10.79203 -10.07086 -9.58491 -9.30928 -8.80454 -6.45603 0.60409 0.72022 1.50807 1.59196 1.69484 1.78863 2.12013 2.30231 2.36465 2.61045 2.86862 3.33470 3.92121 3.96088 3.99012 4.12641 4.19549 4.29088 4.36835 4.54032 4.57405 4.62063 4.71027 4.75218 4.88898 5.07461 5.10187 5.17462 5.22647 5.41993 5.49700 5.56924 5.67402 5.78875 5.95344 6.08871 6.38083 6.65887 6.71643 6.85835 7.34113 7.99332 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.006699 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.228405 B = 4178.707732 C = 6164.930577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.496 3.504 3 O -0.611 6.611 4 N -0.714 5.714 5 C 0.132 3.868 6 C -0.044 4.044 7 C -0.194 4.194 8 C -0.047 4.047 9 C -0.130 4.130 10 C 0.053 3.947 11 C -0.232 4.232 12 C 0.094 3.906 13 C -0.519 4.519 14 H 0.094 0.906 15 C 0.005 3.995 16 N -0.809 5.809 17 Si 1.107 2.893 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.248 1.248 21 O -0.343 6.343 22 C 0.208 3.792 23 O -0.331 6.331 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.418 0.582 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.285 0.715 35 H 0.086 0.914 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -1.283 -4.969 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.285 3.715 3 O -0.493 6.493 4 N -0.367 5.367 5 C 0.007 3.993 6 C -0.081 4.081 7 C -0.196 4.196 8 C -0.065 4.065 9 C -0.174 4.174 10 C 0.010 3.990 11 C -0.252 4.252 12 C 0.091 3.909 13 C -0.546 4.546 14 H 0.112 0.888 15 C -0.213 4.213 16 N -0.431 5.431 17 Si 0.924 3.076 18 H -0.199 1.199 19 H -0.196 1.196 20 H -0.172 1.172 21 O -0.261 6.261 22 C 0.096 3.904 23 O -0.249 6.249 24 H 0.127 0.873 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.256 0.744 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.986 -0.547 -3.471 9.648 hybrid contribution 0.644 -0.435 -1.718 1.886 sum -8.342 -0.983 -5.189 9.873 Atomic orbital electron populations 1.21855 0.87343 1.06584 1.05937 1.21836 0.92679 0.82725 0.74271 1.90703 1.72469 1.33565 1.52609 1.46116 1.06854 1.09539 1.74160 1.21138 0.79981 0.97757 1.00380 1.20195 0.90113 0.94561 1.03248 1.19246 0.95545 1.13344 0.91431 1.19483 0.88412 1.00160 0.98466 1.19501 0.92313 1.21209 0.84335 1.19840 0.81654 1.01975 0.95575 1.20063 0.94423 1.17361 0.93334 1.17508 0.89693 0.89467 0.94213 1.20689 1.04021 1.37610 0.92244 0.88847 1.28330 0.91967 0.93088 1.07877 1.70587 1.23781 1.15948 1.32829 0.83127 0.78035 0.76335 0.70096 1.19897 1.19628 1.17157 1.87179 1.22367 1.81904 1.34612 1.25789 0.88103 0.99673 0.76810 1.87037 1.19273 1.88296 1.30332 0.87289 0.88092 0.87822 0.74416 0.94042 0.93435 0.89353 0.90435 0.84969 0.88897 0.90231 0.89667 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.39 71.24 0.74 -1.58 16 2 C 0.50 13.64 7.94 87.66 0.70 14.33 16 3 O -0.61 -24.10 17.10 -3.03 -0.05 -24.16 16 4 N -0.71 -18.20 5.56 -463.07 -2.57 -20.77 16 5 C 0.13 4.50 5.54 86.38 0.48 4.98 16 6 C -0.04 -1.46 4.79 29.85 0.14 -1.32 16 7 C -0.19 -8.38 5.16 -19.65 -0.10 -8.48 16 8 C -0.05 -1.98 9.60 22.08 0.21 -1.77 16 9 C -0.13 -6.05 7.18 22.92 0.16 -5.89 16 10 C 0.05 2.68 7.13 22.59 0.16 2.84 16 11 C -0.23 -12.30 7.95 22.79 0.18 -12.12 16 12 C 0.09 4.73 5.28 -21.29 -0.11 4.62 16 13 C -0.52 -25.35 8.01 23.39 0.19 -25.16 16 14 H 0.09 4.31 6.12 -2.91 -0.02 4.29 16 15 C 0.01 0.26 4.93 85.23 0.42 0.68 16 16 N -0.81 -42.25 12.34 21.81 0.27 -41.98 16 17 Si 1.11 41.43 30.00 68.60 2.06 43.49 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.25 -8.19 7.11 99.48 0.71 -7.49 16 21 O -0.34 -15.54 11.40 -75.95 -0.87 -16.40 16 22 C 0.21 7.18 8.88 113.37 1.01 8.19 16 23 O -0.33 -13.77 11.39 -74.00 -0.84 -14.61 16 24 H 0.11 0.85 7.91 -2.39 -0.02 0.83 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.42 7.18 8.31 -92.71 -0.77 6.41 16 28 H 0.04 1.70 7.28 -2.39 -0.02 1.68 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.38 8.04 -2.39 -0.02 2.36 16 31 H 0.08 2.62 7.04 -2.39 -0.02 2.60 16 32 H 0.13 4.75 8.05 -2.91 -0.02 4.73 16 33 H 0.09 5.26 6.54 -2.91 -0.02 5.24 16 34 H 0.29 15.59 6.70 -92.71 -0.62 14.97 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.16 3.90 8.14 -2.38 -0.02 3.88 16 Total: -1.00 -70.23 308.60 2.67 -67.56 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.50 Total: 27.56 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.18 Total: -20.68 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -2.30 Total: -62.76 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -1.76 Total: -55.17 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.06 Total: 43.49 kcal Total: -70.23 2.67 -67.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001019668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.554 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds