Wall clock time and date at job start Mon Mar 30 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.50704 * 109.47083 * 185.00194 * 4 2 1 6 6 O 1.21209 * 120.00224 * 0.02562 * 5 4 2 7 7 O 1.34313 * 119.99828 * 179.97438 * 5 4 2 8 8 C 1.34923 * 116.99773 * 180.02562 * 7 5 4 9 9 H 1.07994 * 120.00251 * 359.97438 * 8 7 5 10 10 C 1.38750 * 119.99995 * 180.02562 * 8 7 5 11 11 N 1.31441 * 120.00264 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99999 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47240 * 90.00156 * 12 10 8 14 14 H 1.48497 * 109.47418 * 210.00542 * 12 10 8 15 15 H 1.48503 * 109.47168 * 330.00740 * 12 10 8 16 16 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 17 17 C 1.34777 * 119.99665 * 85.27876 * 16 2 1 18 18 O 1.21553 * 120.00289 * 359.72074 * 17 16 2 19 19 C 1.47846 * 119.99557 * 179.72375 * 17 16 2 20 20 C 1.39575 * 120.14570 * 359.72055 * 19 17 16 21 21 C 1.37955 * 119.85022 * 179.78726 * 20 19 17 22 22 C 1.38362 * 120.14738 * 0.49095 * 21 20 19 23 23 C 1.38361 * 120.29120 * 359.74322 * 22 21 20 24 24 C 1.37957 * 120.14182 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 26 26 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 27 27 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 29 29 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 30 30 H 0.97001 * 120.00363 * 179.97438 * 11 10 8 31 31 H 0.97001 * 119.99790 * 264.99588 * 16 2 1 32 32 H 1.08001 * 120.07522 * 0.02562 * 20 19 17 33 33 H 1.08007 * 119.92736 * 180.22839 * 21 20 19 34 34 H 1.08004 * 119.85306 * 179.71843 * 22 21 20 35 35 H 1.07995 * 119.92745 * 180.02562 * 23 22 21 36 36 H 1.08008 * 120.06811 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1447 -0.0207 0.4452 7 8 4.2125 -1.1775 2.3315 8 6 5.5552 -1.0449 2.3284 9 1 6.0427 -0.5056 1.5299 10 6 6.3097 -1.6024 3.3508 11 7 7.6177 -1.4737 3.3476 12 14 5.4664 -2.5359 4.7317 13 1 5.3581 -3.9708 4.3652 14 1 6.2627 -2.4021 5.9780 15 1 4.1080 -1.9769 4.9497 16 7 2.0184 -0.6906 -1.1961 17 6 2.1524 -0.0169 -2.3557 18 8 1.8633 1.1625 -2.4103 19 6 2.6511 -0.7125 -3.5613 20 6 2.9894 -2.0652 -3.5005 21 6 3.4500 -2.7093 -4.6302 22 6 3.5864 -2.0148 -5.8191 23 6 3.2574 -0.6725 -5.8849 24 6 2.7912 -0.0177 -4.7637 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 8.1452 -1.8631 4.0625 31 1 2.2491 -1.6318 -1.1525 32 1 2.8873 -2.6075 -2.5721 33 1 3.7086 -3.7570 -4.5854 34 1 3.9517 -2.5226 -6.6995 35 1 3.3657 -0.1362 -6.8160 36 1 2.5351 1.0303 -4.8163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017601409.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:03 Heat of formation + Delta-G solvation = -93.711063 kcal Electronic energy + Delta-G solvation = -20929.988373 eV Core-core repulsion = 17572.473321 eV Total energy + Delta-G solvation = -3357.515053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21308 -39.24118 -38.22705 -36.13638 -34.84239 -32.36551 -32.22537 -31.01128 -30.35669 -28.25400 -25.27921 -24.14193 -22.65331 -21.60590 -20.29958 -19.81358 -18.08423 -17.86956 -16.72741 -16.46099 -15.95842 -15.15280 -15.04818 -14.86701 -14.58983 -14.42601 -13.94596 -13.70481 -13.45395 -13.01013 -12.85187 -12.52674 -12.28633 -12.20017 -12.03055 -11.74858 -11.65926 -11.20686 -11.16363 -10.88478 -10.48350 -10.37784 -9.74926 -9.70916 -9.18528 -9.10102 -9.06487 -8.81757 -8.68842 -6.37346 -4.13271 0.83681 1.27824 2.98696 3.11963 3.22127 3.28714 3.33805 3.40874 3.89827 4.04719 4.23299 4.68845 4.72247 4.83257 4.89407 5.04316 5.08683 5.27321 5.31894 5.35390 5.40559 5.59242 5.69284 5.71685 5.75852 5.87376 6.07673 6.21422 6.24225 6.32347 6.33969 6.43035 6.64711 6.79295 7.66250 7.74601 8.03312 8.40343 8.62718 9.01117 9.68008 10.71351 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.004542 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.473639 B = 6162.937461 C = 7023.248884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.156 3.844 3 H 0.099 0.901 4 C -0.117 4.117 5 C 0.402 3.598 6 O -0.528 6.528 7 O -0.255 6.255 8 C -0.381 4.381 9 H 0.108 0.892 10 C 0.065 3.935 11 N -0.876 5.876 12 Si 0.906 3.094 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.260 1.260 16 N -0.706 5.706 17 C 0.566 3.434 18 O -0.541 6.541 19 C -0.127 4.127 20 C -0.083 4.083 21 C -0.128 4.128 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.062 4.062 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.279 0.721 31 H 0.397 0.603 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 -3.942 -12.348 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.117 0.883 4 C -0.155 4.155 5 C 0.247 3.753 6 O -0.422 6.422 7 O -0.164 6.164 8 C -0.457 4.457 9 H 0.126 0.874 10 C -0.139 4.139 11 N -0.515 5.515 12 Si 0.731 3.269 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.185 1.185 16 N -0.357 5.357 17 C 0.353 3.647 18 O -0.420 6.420 19 C -0.130 4.130 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.118 4.118 23 C -0.149 4.149 24 C -0.081 4.081 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.508 -2.982 -12.454 18.613 hybrid contribution 0.174 -0.975 0.777 1.259 sum -13.333 -3.958 -11.677 18.160 Atomic orbital electron populations 1.22171 0.94687 1.02190 1.02824 1.20733 0.93188 0.98420 0.82468 0.88331 1.21533 0.91120 1.03300 0.99583 1.22910 0.90166 0.80451 0.81764 1.90657 1.70122 1.41972 1.39426 1.83519 1.22952 1.65816 1.44087 1.20632 0.76505 1.36539 1.11995 0.87412 1.24549 0.94721 0.96777 0.97805 1.69610 1.04357 1.43776 1.33787 0.86215 0.80122 0.80076 0.80472 1.19956 1.20805 1.18456 1.45758 1.66772 1.13711 1.09435 1.18122 0.77223 0.86321 0.83042 1.90730 1.50759 1.15358 1.85140 1.20030 1.03993 0.94440 0.94547 1.21358 0.96588 0.93553 0.98710 1.21115 1.00340 1.00371 0.92771 1.21348 0.97935 0.94558 0.97940 1.21142 1.00312 0.94888 0.98536 1.21292 0.95292 1.00379 0.91160 0.91287 0.91769 0.92355 0.87285 0.88536 0.91078 0.76799 0.85614 0.85426 0.85734 0.85471 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.49 37.16 0.35 -1.45 16 2 C 0.16 2.32 2.14 -67.93 -0.15 2.17 16 3 H 0.10 1.77 7.38 -51.93 -0.38 1.39 16 4 C -0.12 -1.76 5.35 -27.88 -0.15 -1.91 16 5 C 0.40 9.00 7.77 36.01 0.28 9.28 16 6 O -0.53 -13.64 14.59 -19.05 -0.28 -13.92 16 7 O -0.25 -6.54 8.58 -20.72 -0.18 -6.72 16 8 C -0.38 -11.25 10.10 30.92 0.31 -10.94 16 9 H 0.11 3.55 7.09 -52.49 -0.37 3.18 16 10 C 0.06 1.85 5.49 -17.53 -0.10 1.76 16 11 N -0.88 -25.99 13.96 55.48 0.77 -25.21 16 12 Si 0.91 21.14 28.62 -169.99 -4.86 16.28 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 16 N -0.71 -10.65 4.17 -54.75 -0.23 -10.87 16 17 C 0.57 9.49 7.74 -12.33 -0.10 9.40 16 18 O -0.54 -10.66 16.01 5.32 0.09 -10.58 16 19 C -0.13 -1.83 5.87 -104.97 -0.62 -2.45 16 20 C -0.08 -1.02 9.54 -39.19 -0.37 -1.39 16 21 C -0.13 -1.34 10.03 -39.64 -0.40 -1.73 16 22 C -0.10 -0.97 10.04 -39.49 -0.40 -1.37 16 23 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 24 C -0.06 -0.82 9.60 -39.19 -0.38 -1.19 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.40 5.20 6.64 -40.82 -0.27 4.92 16 32 H 0.13 1.34 6.41 -52.49 -0.34 1.01 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 1.76 7.65 -52.48 -0.40 1.36 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -35.68 318.79 -6.27 -41.95 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.28 Total: 5.88 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.10 Total: -1.61 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.55 Total: -36.08 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.37 Total: -31.22 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.86 Total: 16.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.68 -6.27 -41.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017601409.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.763 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds