Wall clock time and date at job start Mon Mar 30 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.50704 * 109.47083 * 185.00194 * 4 2 1 6 6 O 1.21209 * 120.00224 * 0.02562 * 5 4 2 7 7 O 1.34313 * 119.99828 * 179.97438 * 5 4 2 8 8 C 1.34923 * 116.99773 * 180.02562 * 7 5 4 9 9 H 1.07994 * 120.00251 * 359.97438 * 8 7 5 10 10 C 1.38750 * 119.99995 * 180.02562 * 8 7 5 11 11 N 1.31441 * 120.00264 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99999 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47240 * 90.00156 * 12 10 8 14 14 H 1.48497 * 109.47418 * 210.00542 * 12 10 8 15 15 H 1.48503 * 109.47168 * 330.00740 * 12 10 8 16 16 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 17 17 C 1.34777 * 119.99665 * 85.27876 * 16 2 1 18 18 O 1.21553 * 120.00289 * 359.72074 * 17 16 2 19 19 C 1.47846 * 119.99557 * 179.72375 * 17 16 2 20 20 C 1.39575 * 120.14570 * 359.72055 * 19 17 16 21 21 C 1.37955 * 119.85022 * 179.78726 * 20 19 17 22 22 C 1.38362 * 120.14738 * 0.49095 * 21 20 19 23 23 C 1.38361 * 120.29120 * 359.74322 * 22 21 20 24 24 C 1.37957 * 120.14182 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 26 26 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 27 27 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 29 29 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 30 30 H 0.97001 * 120.00363 * 179.97438 * 11 10 8 31 31 H 0.97001 * 119.99790 * 264.99588 * 16 2 1 32 32 H 1.08001 * 120.07522 * 0.02562 * 20 19 17 33 33 H 1.08007 * 119.92736 * 180.22839 * 21 20 19 34 34 H 1.08004 * 119.85306 * 179.71843 * 22 21 20 35 35 H 1.07995 * 119.92745 * 180.02562 * 23 22 21 36 36 H 1.08008 * 120.06811 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1447 -0.0207 0.4452 7 8 4.2125 -1.1775 2.3315 8 6 5.5552 -1.0449 2.3284 9 1 6.0427 -0.5056 1.5299 10 6 6.3097 -1.6024 3.3508 11 7 7.6177 -1.4737 3.3476 12 14 5.4664 -2.5359 4.7317 13 1 5.3581 -3.9708 4.3652 14 1 6.2627 -2.4021 5.9780 15 1 4.1080 -1.9769 4.9497 16 7 2.0184 -0.6906 -1.1961 17 6 2.1524 -0.0169 -2.3557 18 8 1.8633 1.1625 -2.4103 19 6 2.6511 -0.7125 -3.5613 20 6 2.9894 -2.0652 -3.5005 21 6 3.4500 -2.7093 -4.6302 22 6 3.5864 -2.0148 -5.8191 23 6 3.2574 -0.6725 -5.8849 24 6 2.7912 -0.0177 -4.7637 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 8.1452 -1.8631 4.0625 31 1 2.2491 -1.6318 -1.1525 32 1 2.8873 -2.6075 -2.5721 33 1 3.7086 -3.7570 -4.5854 34 1 3.9517 -2.5226 -6.6995 35 1 3.3657 -0.1362 -6.8160 36 1 2.5351 1.0303 -4.8163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017601409.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:03 Heat of formation + Delta-G solvation = -118.039416 kcal Electronic energy + Delta-G solvation = -20931.043330 eV Core-core repulsion = 17572.473321 eV Total energy + Delta-G solvation = -3358.570009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53502 -40.91936 -39.31969 -37.76915 -36.52127 -34.49357 -33.42068 -31.91122 -31.41716 -29.57691 -27.24171 -25.23392 -23.58299 -22.89340 -21.53029 -21.39526 -20.13470 -19.07196 -18.56988 -17.69707 -17.02648 -16.79841 -16.64557 -16.12639 -15.94651 -15.64929 -15.51149 -14.74727 -14.59736 -14.38191 -14.35568 -13.91234 -13.62389 -13.60503 -13.29290 -12.92894 -12.84490 -12.61495 -12.36919 -12.25445 -12.08526 -11.97517 -11.84240 -11.08275 -11.02950 -10.82531 -10.24109 -9.97334 -9.87003 -8.53458 -6.40810 -0.13846 0.39290 1.32339 1.35718 1.55589 1.60899 1.85212 2.16641 2.28000 2.41906 2.90304 2.92825 3.55965 3.71473 3.88860 4.00346 4.10322 4.20307 4.21839 4.45100 4.48176 4.53919 4.61139 4.65408 4.82165 4.85023 5.02133 5.04359 5.29838 5.33086 5.42941 5.46695 5.48903 5.51010 5.90403 5.93898 6.47404 6.58440 6.84567 7.16936 7.61571 8.59931 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.004542 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.473639 B = 6162.937461 C = 7023.248884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 H 0.057 0.943 4 C -0.102 4.102 5 C 0.402 3.598 6 O -0.570 6.570 7 O -0.258 6.258 8 C -0.407 4.407 9 H 0.050 0.950 10 C 0.012 3.988 11 N -0.923 5.923 12 Si 0.989 3.011 13 H -0.257 1.257 14 H -0.271 1.271 15 H -0.246 1.246 16 N -0.703 5.703 17 C 0.555 3.445 18 O -0.586 6.586 19 C -0.158 4.158 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.091 4.091 23 C -0.129 4.129 24 C -0.084 4.084 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.288 0.712 31 H 0.406 0.594 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.699 -6.773 -11.835 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.048 3.952 3 H 0.075 0.925 4 C -0.139 4.139 5 C 0.249 3.751 6 O -0.465 6.465 7 O -0.168 6.168 8 C -0.483 4.483 9 H 0.068 0.932 10 C -0.187 4.187 11 N -0.563 5.563 12 Si 0.808 3.192 13 H -0.182 1.182 14 H -0.196 1.196 15 H -0.169 1.169 16 N -0.353 5.353 17 C 0.344 3.656 18 O -0.468 6.468 19 C -0.161 4.161 20 C -0.111 4.111 21 C -0.147 4.147 22 C -0.109 4.109 23 C -0.147 4.147 24 C -0.103 4.103 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.098 0.902 31 H 0.243 0.757 32 H 0.153 0.847 33 H 0.174 0.826 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.555 -5.827 -11.953 20.464 hybrid contribution 0.856 -0.028 0.436 0.961 sum -14.698 -5.856 -11.517 19.570 Atomic orbital electron populations 1.22071 0.91142 1.04106 1.03189 1.20812 0.95738 0.96233 0.82375 0.92478 1.21759 0.84780 1.06423 1.00954 1.24556 0.92919 0.77814 0.79802 1.90657 1.71815 1.43254 1.40734 1.83532 1.20796 1.66945 1.45511 1.20245 0.78505 1.37855 1.11657 0.93197 1.25648 0.95318 0.97220 1.00529 1.69725 1.06346 1.44885 1.35306 0.85001 0.79298 0.78782 0.76124 1.18157 1.19567 1.16893 1.45800 1.66222 1.14119 1.09169 1.18648 0.76659 0.86048 0.84199 1.90685 1.52929 1.17180 1.85959 1.20039 1.06325 0.95688 0.94039 1.21555 0.96763 0.92702 1.00125 1.21522 0.99174 1.01761 0.92251 1.21821 0.96062 0.94096 0.98935 1.21476 0.99112 0.95609 0.98519 1.21397 0.96625 1.00180 0.92070 0.89012 0.93363 0.89562 0.83762 0.84164 0.90196 0.75677 0.84655 0.82568 0.82105 0.82769 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.49 71.98 0.68 -2.29 16 2 C 0.15 4.44 2.14 44.99 0.10 4.54 16 3 H 0.06 2.15 7.38 -2.39 -0.02 2.13 16 4 C -0.10 -2.80 5.35 29.85 0.16 -2.64 16 5 C 0.40 18.07 7.77 71.24 0.55 18.62 16 6 O -0.57 -30.91 14.59 20.78 0.30 -30.61 16 7 O -0.26 -13.24 8.58 14.82 0.13 -13.11 16 8 C -0.41 -24.91 10.10 67.94 0.69 -24.22 16 9 H 0.05 3.55 7.09 -2.91 -0.02 3.53 16 10 C 0.01 0.70 5.49 84.87 0.47 1.16 16 11 N -0.92 -56.12 13.96 21.62 0.30 -55.82 16 12 Si 0.99 42.58 28.62 68.60 1.96 44.54 16 13 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 14 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 15 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 16 N -0.70 -21.42 4.17 -445.41 -1.86 -23.28 16 17 C 0.56 19.72 7.74 86.79 0.67 20.39 16 18 O -0.59 -24.87 16.01 -3.88 -0.06 -24.94 16 19 C -0.16 -4.73 5.87 -20.09 -0.12 -4.85 16 20 C -0.09 -2.22 9.54 22.53 0.21 -2.01 16 21 C -0.13 -2.41 10.03 22.23 0.22 -2.19 16 22 C -0.09 -1.52 10.04 22.33 0.22 -1.30 16 23 C -0.13 -2.56 10.03 22.23 0.22 -2.33 16 24 C -0.08 -2.28 9.60 22.53 0.22 -2.07 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.14 2.77 8.14 -2.39 -0.02 2.76 16 30 H 0.29 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.41 10.43 6.64 -92.71 -0.62 9.82 16 32 H 0.14 2.81 6.41 -2.91 -0.02 2.79 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.12 3.50 7.65 -2.91 -0.02 3.47 16 Total: -1.00 -85.18 318.79 5.56 -79.62 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.49 Total: 22.79 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.30 Total: 0.81 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.56 Total: -79.10 kcal Atomic # 8 Polarization: -69.02 SS G_CDS: 0.37 Total: -68.65 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.96 Total: 44.54 kcal Total: -85.18 5.56 -79.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017601409.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.422 kcal (2) G-P(sol) polarization free energy of solvation -85.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds