Wall clock time and date at job start Mon Mar 30 2020 01:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00206 * 2 1 4 4 C 1.47181 * 119.99461 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14908 * 359.97438 * 4 2 1 6 6 C 1.37891 * 119.93864 * 180.02562 * 5 4 2 7 7 C 1.38339 * 120.23434 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29345 * 0.02562 * 7 6 5 9 9 O 1.35919 * 119.97211 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99470 * 359.97438 * 9 8 7 11 11 C 1.50708 * 109.46570 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00303 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99446 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99748 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.46938 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00564 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99620 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99851 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99643 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47247 * 89.99918 * 19 17 15 21 21 H 1.48508 * 109.47011 * 209.99669 * 19 17 15 22 22 H 1.48493 * 109.47424 * 329.99419 * 19 17 15 23 23 C 1.38431 * 120.05993 * 359.97438 * 8 7 6 24 24 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47426 * 300.00647 * 1 2 3 26 26 H 1.09001 * 109.46924 * 60.00321 * 1 2 3 27 27 H 1.08001 * 120.03042 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.88601 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.85413 * 180.02562 * 7 6 5 30 30 H 1.08992 * 109.47381 * 299.99874 * 10 9 8 31 31 H 1.08995 * 109.46844 * 60.00466 * 10 9 8 32 32 H 0.97002 * 120.00665 * 0.02562 * 13 11 10 33 33 H 1.08997 * 109.47066 * 300.00786 * 14 13 11 34 34 H 1.09000 * 109.46920 * 60.00296 * 14 13 11 35 35 H 0.97008 * 119.99776 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.11481 * 180.27741 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4817 0.0011 9 8 5.6837 -2.4900 0.0011 10 6 6.3246 -3.7672 0.0028 11 6 7.8198 -3.5789 0.0019 12 8 8.2903 -2.4611 0.0005 13 7 8.6342 -4.6528 0.0038 14 6 10.0878 -4.4699 0.0024 15 6 10.7636 -5.8168 0.0043 16 1 10.1699 -6.7189 0.0060 17 6 12.1401 -5.8974 0.0039 18 7 12.8630 -4.7989 0.0014 19 14 12.9778 -7.5670 0.0056 20 1 13.1993 -8.0111 -1.3941 21 1 14.2838 -7.4648 0.7051 22 1 12.1164 -8.5523 0.7071 23 6 3.6404 -1.2782 0.0000 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.4665 -2.4911 0.0025 28 1 1.7017 -4.6157 0.0031 29 1 4.1607 -4.6171 0.0026 30 1 6.0283 -4.3212 0.8935 31 1 6.0283 -4.3235 -0.8864 32 1 8.2580 -5.5469 0.0053 33 1 10.3834 -3.9166 -0.8890 34 1 10.3847 -3.9127 0.8909 35 1 13.8315 -4.8556 0.0015 36 1 4.1848 -0.3455 -0.0053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019505694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:29 Heat of formation + Delta-G solvation = -112.732547 kcal Electronic energy + Delta-G solvation = -19806.730683 eV Core-core repulsion = 16448.390797 eV Total energy + Delta-G solvation = -3358.339886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.57842 -40.72071 -39.90267 -38.04199 -36.21692 -34.43548 -32.73774 -32.14264 -30.54159 -29.73897 -28.32117 -25.11328 -24.32031 -23.41504 -21.75247 -20.90326 -19.30606 -18.92477 -17.75960 -17.46599 -17.45494 -16.86713 -16.83740 -16.37514 -16.10563 -16.08519 -15.71806 -15.41143 -14.70080 -14.60476 -14.13561 -14.09746 -13.84826 -13.46165 -13.29489 -13.00780 -12.95300 -12.72251 -12.61811 -12.23601 -12.11041 -12.06746 -11.51260 -10.90127 -10.85252 -10.83006 -10.09579 -9.95332 -9.32708 -8.30487 -6.47791 -0.42587 0.37860 1.38353 1.43283 1.46379 1.55988 1.56506 1.62069 2.36412 2.73198 2.75930 3.04829 3.15490 3.62729 3.82250 3.96230 3.99002 4.07716 4.09708 4.17197 4.32192 4.48192 4.67755 4.77836 4.89435 5.06508 5.08006 5.18759 5.25640 5.28622 5.39711 5.40809 5.60109 5.69592 5.80488 6.28643 6.49869 6.61984 6.78708 7.20305 7.37579 8.81855 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048751 B = 0.002617 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.214723 B =10696.963514 C =11245.430192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.392 3.608 3 O -0.510 6.510 4 C -0.151 4.151 5 C -0.096 4.096 6 C -0.083 4.083 7 C -0.175 4.175 8 C 0.096 3.904 9 O -0.328 6.328 10 C 0.053 3.947 11 C 0.493 3.507 12 O -0.594 6.594 13 N -0.696 5.696 14 C 0.265 3.735 15 C -0.555 4.555 16 H 0.090 0.910 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.988 3.012 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.252 1.252 23 C -0.129 4.129 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.180 0.820 28 H 0.177 0.823 29 H 0.162 0.838 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.415 0.585 33 H -0.012 1.012 34 H -0.012 1.012 35 H 0.269 0.731 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.103 -4.164 0.020 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.273 3.727 3 O -0.389 6.389 4 C -0.152 4.152 5 C -0.114 4.114 6 C -0.101 4.101 7 C -0.193 4.193 8 C 0.051 3.949 9 O -0.242 6.242 10 C -0.024 4.024 11 C 0.280 3.720 12 O -0.475 6.475 13 N -0.348 5.348 14 C 0.142 3.858 15 C -0.592 4.592 16 H 0.108 0.892 17 C -0.199 4.199 18 N -0.571 5.571 19 Si 0.811 3.189 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.175 1.175 23 C -0.148 4.148 24 H 0.136 0.864 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.198 0.802 28 H 0.194 0.806 29 H 0.179 0.821 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.252 0.748 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.077 0.923 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -29.138 -2.612 0.022 29.255 hybrid contribution 1.404 -0.385 -0.014 1.456 sum -27.734 -2.998 0.008 27.896 Atomic orbital electron populations 1.22280 0.89139 1.07364 1.05949 1.23333 0.93984 0.86491 0.68875 1.90555 1.73590 1.36024 1.38771 1.20545 0.92158 0.96935 1.05543 1.21894 1.02207 0.89797 0.97507 1.21487 0.92478 1.00045 0.96043 1.21952 0.96891 0.96707 1.03785 1.19181 0.81726 0.95253 0.98749 1.86163 1.17519 1.31399 1.89090 1.22626 0.87797 0.84983 1.07028 1.20980 0.89811 0.84697 0.76553 1.90697 1.78585 1.26567 1.51674 1.45990 1.07422 1.08835 1.72545 1.18611 0.75770 0.97096 0.94275 1.21611 0.92407 0.92267 1.52947 0.89169 1.26128 0.98170 1.01740 0.93843 1.70152 1.06664 1.30406 1.49898 0.85106 0.77446 0.77750 0.78597 1.19603 1.21234 1.17539 1.20684 0.94452 0.96407 1.03281 0.86397 0.87626 0.87622 0.80249 0.80564 0.82070 0.85242 0.85251 0.74821 0.99413 0.99388 0.92251 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 10.19 71.24 0.73 -0.72 16 2 C 0.39 7.70 7.23 28.04 0.20 7.90 16 3 O -0.51 -15.33 17.09 -2.93 -0.05 -15.38 16 4 C -0.15 -2.99 5.87 -20.16 -0.12 -3.11 16 5 C -0.10 -1.02 9.44 22.58 0.21 -0.81 16 6 C -0.08 -0.82 10.02 22.21 0.22 -0.60 16 7 C -0.17 -2.78 9.04 22.44 0.20 -2.58 16 8 C 0.10 2.49 6.68 22.46 0.15 2.64 16 9 O -0.33 -10.89 9.67 -73.60 -0.71 -11.61 16 10 C 0.05 1.40 5.22 71.24 0.37 1.77 16 11 C 0.49 20.05 7.91 87.66 0.69 20.74 16 12 O -0.59 -31.84 16.50 16.01 0.26 -31.57 16 13 N -0.70 -28.34 5.55 -466.78 -2.59 -30.93 16 14 C 0.27 14.46 5.43 85.63 0.46 14.93 16 15 C -0.55 -29.46 9.28 25.60 0.24 -29.22 16 16 H 0.09 4.21 7.60 -2.92 -0.02 4.19 16 17 C 0.00 0.04 5.46 84.66 0.46 0.50 16 18 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 19 Si 0.99 41.53 29.54 68.60 2.03 43.56 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.13 -3.60 9.54 22.69 0.22 -3.39 16 24 H 0.12 0.07 5.60 -2.39 -0.01 0.06 16 25 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.18 0.25 5.92 -2.91 -0.02 0.23 16 28 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 29 H 0.16 1.62 6.27 -2.91 -0.02 1.60 16 30 H 0.13 2.36 7.66 -2.39 -0.02 2.34 16 31 H 0.13 2.36 7.65 -2.39 -0.02 2.34 16 32 H 0.41 12.85 8.32 -92.71 -0.77 12.08 16 33 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 36 H 0.11 3.57 7.65 -2.91 -0.02 3.55 16 Total: -1.00 -87.34 319.84 3.62 -83.72 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.35 Total: 10.18 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 4.04 Total: 8.07 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -2.30 Total: -86.96 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -0.50 Total: -58.56 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -87.34 3.62 -83.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019505694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.013 kcal (2) G-P(sol) polarization free energy of solvation -87.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds