Wall clock time and date at job start Mon Mar 30 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00132 * 2 1 4 4 C 1.50698 * 109.46870 * 270.00046 * 3 2 1 5 5 H 1.07999 * 120.00498 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99856 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99788 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00077 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47052 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47639 * 119.99686 * 8 6 4 11 11 H 1.48508 * 109.47006 * 239.99592 * 8 6 4 12 12 C 1.34779 * 119.99440 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99533 * 184.21974 * 12 2 1 14 14 C 1.50700 * 120.00367 * 4.22033 * 12 2 1 15 15 H 1.08997 * 109.70052 * 313.70940 * 14 12 2 16 16 C 1.53463 * 109.70553 * 74.29029 * 14 12 2 17 17 O 1.43177 * 108.23700 * 179.39403 * 16 14 12 18 18 C 1.36110 * 116.69349 * 313.70099 * 17 16 14 19 19 C 1.38701 * 119.39523 * 197.29226 * 18 17 16 20 20 C 1.38202 * 120.06384 * 180.30437 * 19 18 17 21 21 C 1.38256 * 120.11075 * 359.71961 * 20 19 18 22 22 C 1.38198 * 120.11371 * 0.48801 * 21 20 19 23 23 C 1.38696 * 120.06646 * 359.45313 * 22 21 20 24 24 O 1.36107 * 119.40450 * 180.62174 * 23 22 21 25 25 H 1.09000 * 109.46738 * 264.55836 * 1 2 3 26 26 H 1.09001 * 109.46929 * 24.55529 * 1 2 3 27 27 H 1.08994 * 109.47333 * 144.55723 * 1 2 3 28 28 H 1.08993 * 109.47163 * 30.00203 * 3 2 1 29 29 H 1.08996 * 109.47154 * 150.00214 * 3 2 1 30 30 H 0.97004 * 119.99841 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.71206 * 59.70916 * 16 14 12 32 32 H 1.08996 * 109.71187 * 299.07627 * 16 14 12 33 33 H 1.08002 * 119.97164 * 0.29361 * 19 18 17 34 34 H 1.07992 * 119.94363 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.94472 * 180.19848 * 21 20 19 36 36 H 1.08002 * 119.96726 * 179.72650 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6174 -0.6732 8 14 3.4377 3.4169 -3.4339 9 1 2.8597 2.4169 -4.3673 10 1 2.8007 4.7380 -3.6667 11 1 4.9002 3.5246 -3.6680 12 6 2.1388 -1.1673 -0.0005 13 8 3.3492 -1.1688 0.0768 14 6 1.3883 -2.4705 -0.0971 15 1 0.5448 -2.4609 0.5931 16 6 0.8810 -2.6704 -1.5316 17 8 0.1868 -3.9212 -1.5912 18 6 0.7994 -4.9888 -1.0102 19 6 0.3816 -6.2716 -1.3320 20 6 0.9898 -7.3653 -0.7455 21 6 2.0197 -7.1842 0.1588 22 6 2.4379 -5.9085 0.4870 23 6 1.8327 -4.8066 -0.0989 24 8 2.2638 -3.5568 0.2246 25 1 -0.3633 -0.0975 1.0231 26 1 -0.3633 0.9347 -0.4271 27 1 -0.3634 -0.8372 -0.5959 28 1 1.6086 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0312 4.4434 -0.8504 31 1 1.7249 -2.6851 -2.2214 32 1 0.2021 -1.8602 -1.7977 33 1 -0.4198 -6.4160 -2.0414 34 1 0.6632 -8.3633 -0.9978 35 1 2.4952 -8.0409 0.6131 36 1 3.2398 -5.7696 1.1970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:22 Heat of formation + Delta-G solvation = -68.893232 kcal Electronic energy + Delta-G solvation = -21443.782842 eV Core-core repulsion = 18087.343971 eV Total energy + Delta-G solvation = -3356.438871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42615 -39.13150 -37.56324 -37.17108 -35.01594 -32.83338 -31.40518 -30.73129 -28.86369 -27.62928 -26.21223 -25.02060 -23.13700 -22.77775 -21.09669 -19.16071 -18.65343 -17.69920 -16.98225 -16.59129 -16.19533 -15.55418 -15.38999 -15.01023 -14.63370 -14.48637 -14.23202 -14.05052 -13.90538 -13.58501 -13.02450 -12.47878 -12.27393 -12.14367 -12.09094 -11.83847 -11.38013 -11.26433 -11.15216 -10.93164 -10.67816 -10.55265 -10.24321 -9.72874 -9.12281 -8.74509 -8.52132 -8.13110 -7.84920 -6.13088 -4.18969 1.19335 1.22131 2.73026 2.95172 3.13032 3.24953 3.33203 3.36588 3.62170 3.91923 4.20541 4.37152 4.56874 4.70030 4.76605 4.87499 5.01701 5.15834 5.21908 5.28920 5.31419 5.36108 5.59381 5.73812 5.74385 6.02163 6.05930 6.10768 6.34422 6.52279 6.76476 6.94154 7.29650 7.33335 7.39564 7.82137 8.10632 8.15032 8.71338 8.88035 9.46648 10.95085 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.004156 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.507031 B = 6735.479764 C = 6857.110496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.594 5.594 3 C 0.246 3.754 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.516 3.484 13 O -0.511 6.511 14 C 0.035 3.965 15 H 0.103 0.897 16 C 0.032 3.968 17 O -0.304 6.304 18 C 0.045 3.955 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.114 4.114 23 C 0.058 3.942 24 O -0.278 6.278 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 -17.653 0.831 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C 0.127 3.873 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.299 3.701 13 O -0.385 6.385 14 C -0.026 4.026 15 H 0.120 0.880 16 C -0.044 4.044 17 O -0.218 6.218 18 C 0.000 4.000 19 C -0.133 4.133 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.133 4.133 23 C 0.012 3.988 24 O -0.192 6.192 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.534 -17.371 0.916 19.376 hybrid contribution 0.096 0.631 -0.969 1.160 sum -8.438 -16.740 -0.052 18.747 Atomic orbital electron populations 1.21881 0.81146 1.03364 1.00795 1.48106 1.06328 1.07137 1.71251 1.19409 0.92773 0.77261 0.97841 1.21440 1.37038 1.06575 0.92074 0.92305 1.24939 0.95161 0.96310 0.97590 1.69939 1.38037 1.14305 1.30761 0.86422 0.78192 0.78377 0.84315 1.19763 1.20854 1.20785 1.19358 0.87878 0.83654 0.79219 1.90728 1.13378 1.86369 1.48068 1.23077 0.93705 0.87684 0.98098 0.87974 1.23685 0.99687 0.85351 0.95628 1.86318 1.45119 1.16057 1.74315 1.19000 0.96593 0.88685 0.95682 1.20428 1.02139 0.88852 1.01846 1.20883 0.97000 0.98179 0.98005 1.20899 0.97680 0.96075 0.98835 1.20485 1.01774 0.89949 1.01081 1.19095 0.97192 0.85897 0.96606 1.86429 1.43232 1.11347 1.78158 0.93117 0.89705 0.92563 0.94407 0.93483 0.92607 0.89490 0.84863 0.84888 0.85222 0.85148 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 9.86 59.85 0.59 1.64 16 2 N -0.59 -12.14 2.86 -182.96 -0.52 -12.67 16 3 C 0.25 6.23 5.17 -5.20 -0.03 6.20 16 4 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 10.85 7.00 -10.98 -0.08 10.78 16 13 O -0.51 -13.25 16.12 -13.84 -0.22 -13.47 16 14 C 0.04 0.58 2.58 -27.64 -0.07 0.51 16 15 H 0.10 1.44 7.49 -51.93 -0.39 1.05 16 16 C 0.03 0.47 6.26 37.40 0.23 0.71 16 17 O -0.30 -4.37 10.42 -32.88 -0.34 -4.72 16 18 C 0.05 0.65 6.49 -39.14 -0.25 0.39 16 19 C -0.11 -1.30 9.96 -39.42 -0.39 -1.70 16 20 C -0.12 -1.18 10.04 -39.59 -0.40 -1.58 16 21 C -0.12 -1.17 10.04 -39.59 -0.40 -1.57 16 22 C -0.11 -1.46 9.96 -39.43 -0.39 -1.85 16 23 C 0.06 0.89 6.49 -39.14 -0.25 0.63 16 24 O -0.28 -5.03 9.65 -46.89 -0.45 -5.48 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 27 H 0.06 0.67 4.66 -51.93 -0.24 0.43 16 28 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.05 1.36 7.37 -51.93 -0.38 0.98 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.13 1.68 5.95 -51.93 -0.31 1.37 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -33.49 308.10 -7.28 -40.77 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.24 Total: -1.06 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.86 Total: 0.88 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.21 Total: -37.92 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.02 Total: -23.67 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.49 -7.28 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.124 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds