Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21280 * 119.99951 * 2 1 4 4 N 1.34781 * 119.99826 * 180.02562 * 2 1 3 5 5 C 1.39415 * 119.99674 * 185.27678 * 4 2 1 6 6 C 1.39145 * 119.92093 * 33.67455 * 5 4 2 7 7 C 1.37654 * 120.07672 * 180.23009 * 6 5 4 8 8 C 1.39811 * 119.91868 * 359.52194 * 7 6 5 9 9 C 1.47462 * 120.07676 * 180.27311 * 8 7 6 10 10 O 1.21507 * 120.00155 * 359.97438 * 9 8 7 11 11 O 1.34750 * 119.99791 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99822 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47270 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47574 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99998 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00392 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00536 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00136 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47120 * 89.99871 * 18 16 14 20 20 H 1.48501 * 109.47649 * 210.00367 * 18 16 14 21 21 H 1.48498 * 109.47016 * 330.00681 * 18 16 14 22 22 C 1.39809 * 119.84369 * 0.25330 * 8 7 6 23 23 C 1.37651 * 119.91964 * 359.97438 * 22 8 7 24 24 H 1.08995 * 109.47204 * 269.99703 * 1 2 3 25 25 H 1.09000 * 109.46997 * 30.00260 * 1 2 3 26 26 H 1.09003 * 109.47075 * 149.99564 * 1 2 3 27 27 H 0.96995 * 119.99892 * 5.27156 * 4 2 1 28 28 H 1.07997 * 119.96500 * 0.02676 * 6 5 4 29 29 H 1.07997 * 120.03686 * 179.78979 * 7 6 5 30 30 H 1.08996 * 109.47723 * 300.00453 * 12 11 9 31 31 H 1.09010 * 109.46971 * 60.00173 * 12 11 9 32 32 H 1.09003 * 109.47514 * 300.00304 * 13 12 11 33 33 H 1.09000 * 109.47350 * 60.00328 * 13 12 11 34 34 H 0.96991 * 120.00249 * 179.97438 * 17 16 14 35 35 H 1.07991 * 120.03815 * 180.02562 * 22 8 7 36 36 H 1.07996 * 119.95966 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5706 -1.1698 0.1105 6 6 4.2073 -0.1996 0.8782 7 6 5.5796 -0.1963 0.9862 8 6 6.3330 -1.1753 0.3315 9 6 7.8029 -1.1786 0.4498 10 8 8.3607 -0.3296 1.1164 11 8 8.5275 -2.1227 -0.1823 12 6 9.9694 -2.0642 -0.0219 13 6 10.6165 -3.2078 -0.8056 14 6 12.1130 -3.1475 -0.6386 15 1 12.5580 -2.3715 -0.0336 16 6 12.9141 -4.0831 -1.2581 17 7 14.2201 -4.0309 -1.1120 18 14 12.1444 -5.4259 -2.3041 19 1 12.0325 -4.9565 -3.7085 20 1 12.9962 -6.6413 -2.2548 21 1 10.7925 -5.7474 -1.7805 22 6 5.6895 -2.1514 -0.4352 23 6 4.3172 -2.1457 -0.5425 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6989 -2.0054 -0.0781 28 1 3.6245 0.5537 1.3873 29 1 6.0734 0.5591 1.5795 30 1 10.3386 -1.1104 -0.3987 31 1 10.2216 -2.1597 1.0343 32 1 10.2473 -4.1615 -0.4283 33 1 10.3644 -3.1127 -1.8618 34 1 14.7835 -4.6893 -1.5476 35 1 6.2683 -2.9093 -0.9418 36 1 3.8194 -2.8997 -1.1342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021712368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -102.219491 kcal Electronic energy + Delta-G solvation = -19962.847150 eV Core-core repulsion = 16604.963144 eV Total energy + Delta-G solvation = -3357.884006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98350 -39.99799 -38.42163 -36.15747 -35.16820 -33.30456 -31.54115 -31.22712 -30.69191 -29.20158 -25.48989 -23.93017 -23.16017 -21.19423 -20.80592 -20.48675 -18.35497 -17.71571 -17.34345 -16.88256 -16.22556 -15.98262 -15.88809 -14.91260 -14.63975 -14.36914 -14.18581 -13.70159 -13.65033 -13.48192 -13.17744 -13.02319 -12.70509 -12.59762 -12.34514 -11.60978 -11.45189 -11.25612 -10.78197 -10.68235 -10.60644 -10.36404 -9.97200 -9.91988 -9.68793 -9.34211 -9.22638 -8.61887 -8.50352 -6.12204 -4.13365 0.51938 1.18030 2.01785 2.54885 2.75464 3.10479 3.28009 3.35214 3.39207 3.69601 4.17347 4.38837 4.56243 4.65479 4.70625 4.81486 4.95162 5.09030 5.15284 5.21198 5.27212 5.31746 5.77399 5.86822 5.95686 5.99388 6.00032 6.11869 6.23133 6.47038 6.64233 6.78678 6.85723 7.19307 7.22665 7.58488 7.63094 8.14098 8.40590 8.89749 9.47180 11.00377 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039268 B = 0.002907 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.878063 B = 9628.126876 C =10238.994146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.520 6.520 4 N -0.674 5.674 5 C 0.172 3.828 6 C -0.137 4.137 7 C -0.036 4.036 8 C -0.134 4.134 9 C 0.502 3.498 10 O -0.512 6.512 11 O -0.357 6.357 12 C 0.083 3.917 13 C -0.009 4.009 14 C -0.527 4.527 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.882 3.118 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.040 4.040 23 C -0.161 4.161 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.414 0.586 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.146 0.854 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.514 2.805 1.724 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.297 3.703 3 O -0.394 6.394 4 N -0.320 5.320 5 C 0.077 3.923 6 C -0.157 4.157 7 C -0.054 4.054 8 C -0.136 4.136 9 C 0.347 3.653 10 O -0.402 6.402 11 O -0.274 6.274 12 C 0.010 3.990 13 C -0.047 4.047 14 C -0.565 4.565 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.709 3.291 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.058 4.058 23 C -0.181 4.181 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.250 0.750 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -29.774 3.733 1.870 30.066 hybrid contribution -0.333 -1.116 -0.584 1.302 sum -30.107 2.617 1.287 30.248 Atomic orbital electron populations 1.21899 0.90425 1.05430 1.05293 1.21090 0.91028 0.83091 0.75079 1.90787 1.70515 1.31153 1.46978 1.43628 1.05315 1.10220 1.72844 1.17974 0.82787 0.96535 0.95003 1.21021 0.94290 1.00299 1.00063 1.21173 0.92812 0.95986 0.95466 1.19285 0.90188 0.99687 1.04470 1.21003 0.88202 0.79301 0.76774 1.90817 1.73049 1.37589 1.38789 1.86522 1.24020 1.50250 1.66582 1.23407 0.72088 1.01781 1.01682 1.19626 0.96178 0.93232 0.95617 1.20845 0.88204 1.15072 1.32371 0.90623 1.24943 0.94675 0.97469 0.95988 1.69896 1.03527 1.36189 1.43891 0.86741 0.79804 0.81554 0.81034 1.20074 1.21201 1.18760 1.21360 0.93726 0.96406 0.94347 1.20856 0.93864 1.01112 1.02249 0.88266 0.88356 0.89815 0.75005 0.84185 0.84071 0.91600 0.91580 0.95364 0.95787 0.92443 0.83590 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 10.31 36.01 0.37 -0.12 16 2 C 0.51 3.83 7.66 -10.98 -0.08 3.75 16 3 O -0.52 -6.41 14.79 5.56 0.08 -6.33 16 4 N -0.67 -4.33 5.32 -9.86 -0.05 -4.38 16 5 C 0.17 1.68 6.27 -83.74 -0.53 1.15 16 6 C -0.14 -1.59 8.62 -39.46 -0.34 -1.93 16 7 C -0.04 -0.47 9.58 -39.21 -0.38 -0.84 16 8 C -0.13 -1.94 5.88 -104.96 -0.62 -2.56 16 9 C 0.50 9.10 7.89 34.49 0.27 9.38 16 10 O -0.51 -10.51 16.13 -19.27 -0.31 -10.82 16 11 O -0.36 -6.92 9.46 -40.63 -0.38 -7.31 16 12 C 0.08 1.81 5.41 37.15 0.20 2.01 16 13 C -0.01 -0.22 4.42 -27.89 -0.12 -0.34 16 14 C -0.53 -15.06 9.66 -34.44 -0.33 -15.39 16 15 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 18 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 22 C -0.04 -0.47 9.60 -39.21 -0.38 -0.85 16 23 C -0.16 -1.49 9.94 -39.46 -0.39 -1.89 16 24 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 27 H 0.41 1.07 8.81 -40.82 -0.36 0.71 16 28 H 0.14 1.62 6.42 -52.49 -0.34 1.29 16 29 H 0.14 1.83 7.64 -52.49 -0.40 1.42 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 32 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 33 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.15 1.65 7.60 -52.49 -0.40 1.26 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -35.44 318.90 -6.56 -42.00 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.39 Total: -2.34 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.42 Total: -5.66 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.72 Total: -31.06 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.61 Total: -24.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.44 -6.56 -42.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021712368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.222 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds