Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21280 * 119.99951 * 2 1 4 4 N 1.34781 * 119.99826 * 180.02562 * 2 1 3 5 5 C 1.39415 * 119.99674 * 185.27678 * 4 2 1 6 6 C 1.39145 * 119.92093 * 33.67455 * 5 4 2 7 7 C 1.37654 * 120.07672 * 180.23009 * 6 5 4 8 8 C 1.39811 * 119.91868 * 359.52194 * 7 6 5 9 9 C 1.47462 * 120.07676 * 180.27311 * 8 7 6 10 10 O 1.21507 * 120.00155 * 359.97438 * 9 8 7 11 11 O 1.34750 * 119.99791 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99822 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47270 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47574 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99998 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00392 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00536 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00136 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47120 * 89.99871 * 18 16 14 20 20 H 1.48501 * 109.47649 * 210.00367 * 18 16 14 21 21 H 1.48498 * 109.47016 * 330.00681 * 18 16 14 22 22 C 1.39809 * 119.84369 * 0.25330 * 8 7 6 23 23 C 1.37651 * 119.91964 * 359.97438 * 22 8 7 24 24 H 1.08995 * 109.47204 * 269.99703 * 1 2 3 25 25 H 1.09000 * 109.46997 * 30.00260 * 1 2 3 26 26 H 1.09003 * 109.47075 * 149.99564 * 1 2 3 27 27 H 0.96995 * 119.99892 * 5.27156 * 4 2 1 28 28 H 1.07997 * 119.96500 * 0.02676 * 6 5 4 29 29 H 1.07997 * 120.03686 * 179.78979 * 7 6 5 30 30 H 1.08996 * 109.47723 * 300.00453 * 12 11 9 31 31 H 1.09010 * 109.46971 * 60.00173 * 12 11 9 32 32 H 1.09003 * 109.47514 * 300.00304 * 13 12 11 33 33 H 1.09000 * 109.47350 * 60.00328 * 13 12 11 34 34 H 0.96991 * 120.00249 * 179.97438 * 17 16 14 35 35 H 1.07991 * 120.03815 * 180.02562 * 22 8 7 36 36 H 1.07996 * 119.95966 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5706 -1.1698 0.1105 6 6 4.2073 -0.1996 0.8782 7 6 5.5796 -0.1963 0.9862 8 6 6.3330 -1.1753 0.3315 9 6 7.8029 -1.1786 0.4498 10 8 8.3607 -0.3296 1.1164 11 8 8.5275 -2.1227 -0.1823 12 6 9.9694 -2.0642 -0.0219 13 6 10.6165 -3.2078 -0.8056 14 6 12.1130 -3.1475 -0.6386 15 1 12.5580 -2.3715 -0.0336 16 6 12.9141 -4.0831 -1.2581 17 7 14.2201 -4.0309 -1.1120 18 14 12.1444 -5.4259 -2.3041 19 1 12.0325 -4.9565 -3.7085 20 1 12.9962 -6.6413 -2.2548 21 1 10.7925 -5.7474 -1.7805 22 6 5.6895 -2.1514 -0.4352 23 6 4.3172 -2.1457 -0.5425 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6989 -2.0054 -0.0781 28 1 3.6245 0.5537 1.3873 29 1 6.0734 0.5591 1.5795 30 1 10.3386 -1.1104 -0.3987 31 1 10.2216 -2.1597 1.0343 32 1 10.2473 -4.1615 -0.4283 33 1 10.3644 -3.1127 -1.8618 34 1 14.7835 -4.6893 -1.5476 35 1 6.2683 -2.9093 -0.9418 36 1 3.8194 -2.8997 -1.1342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021712368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -126.155180 kcal Electronic energy + Delta-G solvation = -19963.885079 eV Core-core repulsion = 16604.963144 eV Total energy + Delta-G solvation = -3358.921935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.84559 -41.26344 -39.37028 -37.70887 -35.96591 -35.39055 -32.92486 -32.13713 -31.96704 -29.89056 -27.31438 -25.04966 -24.12647 -22.67975 -22.13400 -21.52305 -19.43484 -19.01777 -18.53246 -18.04883 -17.69282 -17.56885 -16.58725 -16.30168 -15.85118 -15.44757 -15.26901 -15.21004 -14.81540 -14.53714 -14.37164 -13.97215 -13.80917 -13.32754 -13.27692 -13.14797 -13.01951 -12.51702 -12.49275 -12.34655 -11.80570 -11.63778 -11.59104 -11.52165 -11.45537 -11.03689 -10.80824 -10.11268 -9.34559 -8.33854 -6.42608 -0.48627 0.29776 1.24041 1.39217 1.41301 1.54032 1.63292 1.66435 2.02195 2.35460 2.71139 3.00817 3.58388 3.69099 3.85661 3.89249 4.15640 4.18369 4.19674 4.28131 4.44559 4.54448 4.60366 4.67582 4.88276 4.93944 5.06726 5.09218 5.16226 5.26539 5.28694 5.31546 5.47912 5.51967 5.80158 6.15754 6.36394 6.63274 6.65469 7.06361 7.22329 8.82300 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039268 B = 0.002907 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.878063 B = 9628.126876 C =10238.994146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.504 3.496 3 O -0.574 6.574 4 N -0.659 5.659 5 C 0.183 3.817 6 C -0.146 4.146 7 C -0.042 4.042 8 C -0.161 4.161 9 C 0.501 3.499 10 O -0.547 6.547 11 O -0.352 6.352 12 C 0.093 3.907 13 C -0.001 4.001 14 C -0.544 4.544 15 H 0.033 0.967 16 C 0.009 3.991 17 N -0.945 5.945 18 Si 0.957 3.043 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.240 1.240 22 C -0.037 4.037 23 C -0.145 4.145 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.436 0.564 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.271 0.729 35 H 0.154 0.846 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.721 0.501 0.153 34.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.295 3.705 3 O -0.452 6.452 4 N -0.306 5.306 5 C 0.087 3.913 6 C -0.167 4.167 7 C -0.061 4.061 8 C -0.163 4.163 9 C 0.349 3.651 10 O -0.440 6.440 11 O -0.268 6.268 12 C 0.019 3.981 13 C -0.039 4.039 14 C -0.582 4.582 15 H 0.051 0.949 16 C -0.189 4.189 17 N -0.585 5.585 18 Si 0.779 3.221 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.163 1.163 22 C -0.056 4.056 23 C -0.165 4.165 24 H 0.134 0.866 25 H 0.113 0.887 26 H 0.135 0.865 27 H 0.277 0.723 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.172 0.828 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -34.043 1.402 0.305 34.074 hybrid contribution 0.869 -0.306 -0.035 0.922 sum -33.175 1.096 0.270 33.194 Atomic orbital electron populations 1.21945 0.86359 1.06962 1.06787 1.22032 0.92854 0.82264 0.73315 1.90779 1.71892 1.33146 1.49411 1.43635 1.03889 1.11354 1.71723 1.18131 0.84578 0.95346 0.93258 1.21035 0.93539 1.01146 1.00937 1.21113 0.93553 0.95784 0.95681 1.19135 0.87616 1.02062 1.07508 1.21727 0.89590 0.78181 0.75620 1.90795 1.73935 1.38832 1.40417 1.86496 1.22362 1.50915 1.67021 1.22997 0.73839 1.00502 1.00712 1.19457 0.93377 0.94409 0.96630 1.21115 0.90891 1.14246 1.31945 0.94891 1.26005 0.95057 1.00367 0.97424 1.70049 1.05430 1.37638 1.45350 0.85558 0.79720 0.77663 0.79143 1.18792 1.20648 1.16339 1.21521 0.95029 0.95546 0.93487 1.21194 0.92669 1.01276 1.01378 0.86586 0.88666 0.86452 0.72304 0.84563 0.85205 0.92615 0.92461 0.94265 0.94508 0.92051 0.82787 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.32 10.31 71.24 0.73 0.41 16 2 C 0.50 6.26 7.66 87.66 0.67 6.94 16 3 O -0.57 -13.66 14.79 -3.03 -0.04 -13.70 16 4 N -0.66 -6.01 5.32 -303.48 -1.61 -7.62 16 5 C 0.18 3.06 6.27 38.37 0.24 3.30 16 6 C -0.15 -3.31 8.62 22.35 0.19 -3.12 16 7 C -0.04 -1.14 9.58 22.51 0.22 -0.92 16 8 C -0.16 -4.63 5.88 -20.09 -0.12 -4.74 16 9 C 0.50 18.58 7.89 70.25 0.55 19.14 16 10 O -0.55 -23.58 16.13 19.81 0.32 -23.26 16 11 O -0.35 -13.58 9.46 -56.61 -0.54 -14.12 16 12 C 0.09 4.13 5.41 71.98 0.39 4.52 16 13 C 0.00 -0.06 4.42 29.85 0.13 0.07 16 14 C -0.54 -31.89 9.66 25.60 0.25 -31.64 16 15 H 0.03 2.14 7.99 -2.91 -0.02 2.11 16 16 C 0.01 0.54 5.47 84.65 0.46 1.01 16 17 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 18 Si 0.96 43.21 27.47 68.60 1.88 45.10 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 22 C -0.04 -0.79 9.60 22.51 0.22 -0.58 16 23 C -0.15 -2.14 9.94 22.35 0.22 -1.92 16 24 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.44 0.05 8.81 -92.71 -0.82 -0.77 16 28 H 0.14 3.19 6.42 -2.91 -0.02 3.17 16 29 H 0.13 3.64 7.64 -2.91 -0.02 3.62 16 30 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.04 1.80 7.20 -2.39 -0.02 1.78 16 33 H 0.04 1.67 7.57 -2.39 -0.02 1.66 16 34 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.15 3.04 7.60 -2.92 -0.02 3.02 16 36 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -80.93 318.90 4.71 -76.23 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.24 Total: 3.82 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 4.16 Total: -7.54 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.31 Total: -66.52 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.26 Total: -51.08 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Total: -80.93 4.71 -76.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021712368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.926 kcal (2) G-P(sol) polarization free energy of solvation -80.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds