Wall clock time and date at job start Mon Mar 30 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41603 * 113.99823 * 2 1 4 4 C 1.46503 * 120.00083 * 269.99671 * 3 2 1 5 5 C 1.34769 * 119.99911 * 90.00392 * 3 2 1 6 6 O 1.21723 * 120.00307 * 180.02562 * 5 3 2 7 7 C 1.46261 * 120.00203 * 359.97438 * 5 3 2 8 8 C 1.35019 * 119.99951 * 179.97438 * 7 5 3 9 9 C 1.46960 * 119.99964 * 180.02562 * 8 7 5 10 10 C 1.40026 * 120.10276 * 180.02562 * 9 8 7 11 11 C 1.37594 * 119.89669 * 180.02562 * 10 9 8 12 12 C 1.39186 * 120.10273 * 0.25351 * 11 10 9 13 13 O 1.35570 * 119.89530 * 179.74679 * 12 11 10 14 14 C 1.34775 * 117.00328 * 354.44459 * 13 12 11 15 15 H 1.08009 * 120.00345 * 5.06215 * 14 13 12 16 16 C 1.38722 * 120.00120 * 185.06096 * 14 13 12 17 17 N 1.31506 * 119.99798 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99710 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47226 * 90.00319 * 18 16 14 20 20 H 1.48503 * 109.46991 * 210.00139 * 18 16 14 21 21 H 1.48501 * 109.47366 * 329.99903 * 18 16 14 22 22 C 1.39173 * 120.19871 * 359.49531 * 12 11 10 23 23 C 1.37597 * 120.10370 * 0.50465 * 22 12 11 24 24 H 1.08997 * 109.47331 * 299.99987 * 1 2 3 25 25 H 1.09008 * 109.47358 * 59.99965 * 1 2 3 26 26 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47456 * 270.00607 * 4 3 2 28 28 H 1.09003 * 109.47075 * 30.00315 * 4 3 2 29 29 H 1.08999 * 109.46992 * 150.00269 * 4 3 2 30 30 H 1.07994 * 119.99467 * 0.02562 * 7 5 3 31 31 H 1.08003 * 120.00324 * 0.02562 * 8 7 5 32 32 H 1.07997 * 120.04753 * 0.02562 * 10 9 8 33 33 H 1.08001 * 119.95149 * 179.97438 * 11 10 9 34 34 H 0.97001 * 119.99729 * 179.97438 * 17 16 14 35 35 H 1.08004 * 119.94780 * 180.25598 * 22 12 11 36 36 H 1.08000 * 120.05078 * 179.77148 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2790 1.9092 1.1671 6 8 2.7736 3.0214 1.1672 7 6 1.9812 1.2413 2.4338 8 6 2.2563 1.8578 3.6031 9 6 1.9575 1.1865 4.8758 10 6 2.2415 1.8241 6.0897 11 6 1.9605 1.1915 7.2788 12 6 1.3998 -0.0824 7.2764 13 8 1.1294 -0.7040 8.4505 14 6 1.5321 -0.0846 9.5777 15 1 1.9715 0.9007 9.5251 16 6 1.3822 -0.7124 10.8056 17 7 1.7747 -0.1078 11.9055 18 14 0.6229 -2.4167 10.8965 19 1 1.6916 -3.4414 10.7827 20 1 -0.0800 -2.5767 12.1949 21 1 -0.3465 -2.5867 9.7846 22 6 1.1111 -0.7179 6.0723 23 6 1.3886 -0.0929 4.8783 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.3155 1.7108 -1.5834 28 1 1.5939 1.6336 -2.0284 29 1 2.2209 3.0419 -1.1384 30 1 1.5419 0.2547 2.4337 31 1 2.6959 2.8443 3.6031 32 1 2.6803 2.8109 6.0925 33 1 2.1795 1.6823 8.2156 34 1 1.6696 -0.5467 12.7641 35 1 0.6722 -1.7047 6.0751 36 1 1.1676 -0.5884 3.9444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029787104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:55 Heat of formation + Delta-G solvation = -7.887303 kcal Electronic energy + Delta-G solvation = -20143.235917 eV Core-core repulsion = 16789.442461 eV Total energy + Delta-G solvation = -3353.793455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85498 -39.30976 -37.52207 -37.03335 -33.41853 -33.02057 -32.47214 -30.53597 -28.95646 -27.49060 -26.50202 -25.43577 -22.80706 -22.25845 -20.70624 -19.49794 -18.24170 -17.53135 -17.43112 -16.72537 -16.26499 -15.29877 -15.00469 -14.56776 -14.45374 -14.29051 -14.07686 -13.98196 -13.75824 -13.17363 -12.91058 -12.82839 -12.65824 -12.40846 -12.18146 -11.88705 -11.75168 -11.21556 -11.02707 -10.91387 -10.75950 -10.28076 -9.90971 -9.68266 -9.55467 -9.19564 -8.91833 -8.47137 -7.24834 -6.60985 -4.24620 0.93052 1.74128 2.03550 2.40204 3.11308 3.15468 3.28549 3.38586 3.97466 4.08455 4.42439 4.62944 4.88154 4.93633 4.99134 5.00916 5.05354 5.18639 5.22642 5.31263 5.43696 5.45710 5.57485 5.60549 5.93934 6.01463 6.17435 6.29968 6.39639 6.54039 6.67321 6.92000 7.08539 7.15043 7.31148 7.41479 7.62297 7.83641 8.04107 8.72349 9.32644 10.45302 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037995 B = 0.003119 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.766246 B = 8974.829317 C = 9627.966086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.140 6.140 3 N -0.486 5.486 4 C 0.088 3.912 5 C 0.565 3.435 6 O -0.540 6.540 7 C -0.275 4.275 8 C 0.037 3.963 9 C -0.190 4.190 10 C -0.036 4.036 11 C -0.230 4.230 12 C 0.174 3.826 13 O -0.202 6.202 14 C -0.392 4.392 15 H 0.111 0.889 16 C 0.066 3.934 17 N -0.867 5.867 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.258 1.258 22 C -0.199 4.199 23 C -0.044 4.044 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.283 0.717 35 H 0.121 0.879 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 0.292 -20.259 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 O -0.144 6.144 3 N -0.265 5.265 4 C -0.052 4.052 5 C 0.361 3.639 6 O -0.420 6.420 7 C -0.296 4.296 8 C 0.017 3.983 9 C -0.191 4.191 10 C -0.054 4.054 11 C -0.249 4.249 12 C 0.119 3.881 13 O -0.105 6.105 14 C -0.467 4.467 15 H 0.128 0.872 16 C -0.139 4.139 17 N -0.503 5.503 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.182 1.182 22 C -0.219 4.219 23 C -0.062 4.062 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.393 0.472 -19.928 20.077 hybrid contribution -0.601 -0.707 0.163 0.942 sum -2.994 -0.235 -19.765 19.992 Atomic orbital electron populations 1.23416 0.81724 1.03957 1.01572 1.90648 1.20052 1.06962 1.96779 1.49839 1.59613 1.10303 1.06751 1.21835 1.01389 0.98007 0.84001 1.18537 0.77240 0.84427 0.83690 1.90829 1.45657 1.19163 1.86381 1.22439 1.13433 1.02856 0.90872 1.22334 0.87882 0.97128 0.90930 1.18509 1.11759 0.96815 0.92023 1.21041 0.95031 0.98124 0.91239 1.21221 1.08146 0.96508 0.99035 1.19368 0.91480 0.91019 0.86185 1.83502 1.68048 1.46521 1.12385 1.20884 1.41199 1.03166 0.81431 0.87178 1.24541 0.96052 0.99762 0.93566 1.69616 1.43625 1.38706 0.98316 0.86155 0.80153 0.82308 0.78205 1.19612 1.20520 1.18189 1.20142 1.10252 1.01541 0.89928 1.20901 0.95246 0.93398 0.96673 0.92345 0.93088 0.87490 0.91808 0.90874 0.89515 0.85351 0.85739 0.86486 0.84481 0.90641 0.86100 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 11.40 101.05 1.15 1.09 16 2 O -0.14 -1.52 10.47 -11.47 -0.12 -1.64 16 3 N -0.49 -5.85 3.36 -68.56 -0.23 -6.08 16 4 C 0.09 0.79 10.82 59.85 0.65 1.43 16 5 C 0.57 8.23 7.67 -13.04 -0.10 8.13 16 6 O -0.54 -9.17 15.81 5.17 0.08 -9.09 16 7 C -0.28 -3.87 8.96 -37.50 -0.34 -4.21 16 8 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 9 C -0.19 -3.14 5.87 -105.03 -0.62 -3.75 16 10 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 11 C -0.23 -4.69 9.14 -39.46 -0.36 -5.05 16 12 C 0.17 3.79 6.66 -38.88 -0.26 3.53 16 13 O -0.20 -5.03 8.57 0.76 0.01 -5.02 16 14 C -0.39 -10.49 9.94 30.91 0.31 -10.18 16 15 H 0.11 3.00 5.41 -52.48 -0.28 2.71 16 16 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 17 N -0.87 -23.93 13.96 55.48 0.77 -23.15 16 18 Si 0.91 20.56 28.62 -169.99 -4.86 15.70 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 22 C -0.20 -3.71 9.97 -39.47 -0.39 -4.10 16 23 C -0.04 -0.72 9.40 -39.15 -0.37 -1.08 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 26 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.80 7.42 -51.93 -0.39 0.41 16 30 H 0.13 1.66 5.47 -52.49 -0.29 1.37 16 31 H 0.12 1.81 7.52 -52.48 -0.39 1.42 16 32 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.14 2.91 5.62 -52.49 -0.29 2.62 16 34 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.12 2.06 8.06 -52.48 -0.42 1.63 16 36 H 0.12 1.61 6.16 -52.49 -0.32 1.28 16 LS Contribution 319.41 15.07 4.81 4.81 Total: -1.00 -29.97 319.41 -4.76 -34.73 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.06 Total: 3.08 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.16 Total: -13.33 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.54 Total: -29.23 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.03 Total: -15.76 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.86 Total: 15.70 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.97 -4.76 -34.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029787104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.839 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds