Wall clock time and date at job start Mon Mar 30 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41603 * 113.99823 * 2 1 4 4 C 1.46503 * 120.00083 * 269.99671 * 3 2 1 5 5 C 1.34769 * 119.99911 * 90.00392 * 3 2 1 6 6 O 1.21723 * 120.00307 * 180.02562 * 5 3 2 7 7 C 1.46261 * 120.00203 * 359.97438 * 5 3 2 8 8 C 1.35019 * 119.99951 * 179.97438 * 7 5 3 9 9 C 1.46960 * 119.99964 * 180.02562 * 8 7 5 10 10 C 1.40026 * 120.10276 * 180.02562 * 9 8 7 11 11 C 1.37594 * 119.89669 * 180.02562 * 10 9 8 12 12 C 1.39186 * 120.10273 * 0.25351 * 11 10 9 13 13 O 1.35570 * 119.89530 * 179.74679 * 12 11 10 14 14 C 1.34775 * 117.00328 * 354.44459 * 13 12 11 15 15 H 1.08009 * 120.00345 * 5.06215 * 14 13 12 16 16 C 1.38722 * 120.00120 * 185.06096 * 14 13 12 17 17 N 1.31506 * 119.99798 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99710 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47226 * 90.00319 * 18 16 14 20 20 H 1.48503 * 109.46991 * 210.00139 * 18 16 14 21 21 H 1.48501 * 109.47366 * 329.99903 * 18 16 14 22 22 C 1.39173 * 120.19871 * 359.49531 * 12 11 10 23 23 C 1.37597 * 120.10370 * 0.50465 * 22 12 11 24 24 H 1.08997 * 109.47331 * 299.99987 * 1 2 3 25 25 H 1.09008 * 109.47358 * 59.99965 * 1 2 3 26 26 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47456 * 270.00607 * 4 3 2 28 28 H 1.09003 * 109.47075 * 30.00315 * 4 3 2 29 29 H 1.08999 * 109.46992 * 150.00269 * 4 3 2 30 30 H 1.07994 * 119.99467 * 0.02562 * 7 5 3 31 31 H 1.08003 * 120.00324 * 0.02562 * 8 7 5 32 32 H 1.07997 * 120.04753 * 0.02562 * 10 9 8 33 33 H 1.08001 * 119.95149 * 179.97438 * 11 10 9 34 34 H 0.97001 * 119.99729 * 179.97438 * 17 16 14 35 35 H 1.08004 * 119.94780 * 180.25598 * 22 12 11 36 36 H 1.08000 * 120.05078 * 179.77148 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2790 1.9092 1.1671 6 8 2.7736 3.0214 1.1672 7 6 1.9812 1.2413 2.4338 8 6 2.2563 1.8578 3.6031 9 6 1.9575 1.1865 4.8758 10 6 2.2415 1.8241 6.0897 11 6 1.9605 1.1915 7.2788 12 6 1.3998 -0.0824 7.2764 13 8 1.1294 -0.7040 8.4505 14 6 1.5321 -0.0846 9.5777 15 1 1.9715 0.9007 9.5251 16 6 1.3822 -0.7124 10.8056 17 7 1.7747 -0.1078 11.9055 18 14 0.6229 -2.4167 10.8965 19 1 1.6916 -3.4414 10.7827 20 1 -0.0800 -2.5767 12.1949 21 1 -0.3465 -2.5867 9.7846 22 6 1.1111 -0.7179 6.0723 23 6 1.3886 -0.0929 4.8783 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.3155 1.7108 -1.5834 28 1 1.5939 1.6336 -2.0284 29 1 2.2209 3.0419 -1.1384 30 1 1.5419 0.2547 2.4337 31 1 2.6959 2.8443 3.6031 32 1 2.6803 2.8109 6.0925 33 1 2.1795 1.6823 8.2156 34 1 1.6696 -0.5467 12.7641 35 1 0.6722 -1.7047 6.0751 36 1 1.1676 -0.5884 3.9444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029787104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:55 Heat of formation + Delta-G solvation = -26.031118 kcal Electronic energy + Delta-G solvation = -20144.022691 eV Core-core repulsion = 16789.442461 eV Total energy + Delta-G solvation = -3354.580230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06853 -40.77279 -38.68629 -38.34267 -34.82578 -34.26810 -33.95891 -32.02282 -30.28186 -28.37366 -27.61658 -26.94818 -24.14539 -23.72945 -21.92434 -20.76158 -19.81927 -19.17945 -18.68941 -17.72947 -17.11469 -16.67202 -16.59244 -15.82028 -15.73513 -15.64276 -15.32022 -15.24994 -15.12528 -14.41092 -14.26897 -14.10768 -13.98236 -13.52990 -13.39964 -13.25642 -12.76271 -12.73092 -12.63997 -12.35593 -11.94727 -11.71505 -11.31390 -11.18161 -10.98495 -10.70429 -10.10706 -9.93032 -8.76853 -8.54097 -6.25846 -0.35531 0.54170 0.88728 1.03936 1.32784 1.37131 1.52469 2.18017 2.26225 2.78925 2.97434 3.03790 3.14149 3.89137 3.96213 4.04074 4.25523 4.31119 4.38755 4.41322 4.44825 4.47988 4.54404 4.61157 4.78549 4.81876 4.82401 5.08918 5.18255 5.24184 5.33815 5.36654 5.56278 5.69354 5.78011 5.82300 6.13098 6.35811 6.79095 6.96629 7.50014 8.56759 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037995 B = 0.003119 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.766246 B = 8974.829317 C = 9627.966086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 O -0.150 6.150 3 N -0.483 5.483 4 C 0.082 3.918 5 C 0.557 3.443 6 O -0.570 6.570 7 C -0.245 4.245 8 C 0.020 3.980 9 C -0.163 4.163 10 C -0.042 4.042 11 C -0.243 4.243 12 C 0.139 3.861 13 O -0.232 6.232 14 C -0.404 4.404 15 H 0.085 0.915 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.194 4.194 23 C -0.039 4.039 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.133 0.867 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.287 0.713 35 H 0.139 0.861 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -0.916 -24.408 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.154 6.154 3 N -0.261 5.261 4 C -0.057 4.057 5 C 0.352 3.648 6 O -0.452 6.452 7 C -0.265 4.265 8 C 0.001 3.999 9 C -0.164 4.164 10 C -0.060 4.060 11 C -0.262 4.262 12 C 0.088 3.912 13 O -0.138 6.138 14 C -0.480 4.480 15 H 0.102 0.898 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.183 1.183 22 C -0.213 4.213 23 C -0.057 4.057 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.151 0.849 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.240 -0.735 -24.166 24.393 hybrid contribution -0.303 -0.173 0.796 0.870 sum -3.544 -0.908 -23.369 23.654 Atomic orbital electron populations 1.23664 0.79743 1.05796 1.02018 1.90638 1.22049 1.05846 1.96862 1.49852 1.58671 1.10620 1.06940 1.22055 1.02737 0.97592 0.83317 1.18600 0.77377 0.84250 0.84607 1.90826 1.46939 1.20415 1.87046 1.22686 1.10387 1.02916 0.90544 1.22234 0.89697 0.97696 0.90314 1.18797 1.08751 0.96571 0.92296 1.21296 0.94908 0.99226 0.90539 1.21234 1.08868 0.96642 0.99465 1.19928 0.92881 0.91858 0.86523 1.83460 1.70791 1.47087 1.12463 1.20772 1.41787 1.02646 0.82813 0.89752 1.25327 0.96755 1.03464 0.93105 1.69702 1.46505 1.40576 0.98889 0.85212 0.79341 0.77815 0.78364 1.18988 1.19272 1.18299 1.20467 1.09259 1.02252 0.89281 1.21315 0.93919 0.93096 0.97356 0.92858 0.91723 0.84896 0.91113 0.87992 0.90029 0.83521 0.85371 0.84045 0.86697 0.90352 0.84323 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.16 11.40 113.37 1.29 1.13 16 2 O -0.15 -2.60 10.47 -38.79 -0.41 -3.00 16 3 N -0.48 -9.85 3.36 -489.02 -1.64 -11.49 16 4 C 0.08 1.20 10.82 127.77 1.38 2.58 16 5 C 0.56 14.40 7.67 86.33 0.66 15.07 16 6 O -0.57 -18.05 15.81 -4.42 -0.07 -18.12 16 7 C -0.24 -5.89 8.96 23.62 0.21 -5.67 16 8 C 0.02 0.54 9.45 23.82 0.23 0.77 16 9 C -0.16 -4.92 5.87 -20.13 -0.12 -5.04 16 10 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 11 C -0.24 -10.24 9.14 22.35 0.20 -10.03 16 12 C 0.14 6.16 6.66 22.72 0.15 6.31 16 13 O -0.23 -12.02 8.57 -20.20 -0.17 -12.19 16 14 C -0.40 -23.01 9.94 67.94 0.68 -22.33 16 15 H 0.09 5.03 5.41 -2.91 -0.02 5.02 16 16 C 0.01 0.73 5.49 84.86 0.47 1.20 16 17 N -0.92 -53.43 13.96 21.62 0.30 -53.12 16 18 Si 0.97 43.67 28.62 68.60 1.96 45.63 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 C -0.19 -6.84 9.97 22.34 0.22 -6.61 16 23 C -0.04 -1.13 9.40 22.55 0.21 -0.92 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 1.30 7.42 -2.39 -0.02 1.28 16 30 H 0.15 2.97 5.47 -2.91 -0.02 2.95 16 31 H 0.13 3.39 7.52 -2.91 -0.02 3.37 16 32 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.12 5.32 5.62 -2.91 -0.02 5.30 16 34 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 36 H 0.16 3.35 6.16 -2.91 -0.02 3.33 16 Total: -1.00 -68.33 319.41 6.88 -61.44 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.10 Total: 15.61 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 5.81 Total: -24.75 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -1.34 Total: -64.62 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.65 Total: -33.32 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.96 Total: 45.63 kcal Total: -68.33 6.88 -61.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029787104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.411 kcal (2) G-P(sol) polarization free energy of solvation -68.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds