Wall clock time and date at job start Mon Mar 30 2020 02:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35819 * 117.00263 * 2 1 4 4 C 1.38873 * 119.89898 * 359.97438 * 3 2 1 5 5 C 1.37741 * 120.17709 * 179.72194 * 4 3 2 6 6 C 1.39998 * 119.97147 * 0.55156 * 5 4 3 7 7 C 1.46937 * 120.09914 * 179.74800 * 6 5 4 8 8 C 1.35145 * 119.99956 * 316.92054 * 7 6 5 9 9 C 1.41797 * 119.99835 * 345.71808 * 8 7 6 10 10 O 1.21785 * 120.00294 * 353.56497 * 9 8 7 11 11 N 1.34774 * 119.99774 * 173.55951 * 9 8 7 12 12 C 1.36752 * 119.99983 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00187 * 359.97438 * 12 11 9 14 14 C 1.39093 * 120.00307 * 180.02562 * 12 11 9 15 15 N 1.31345 * 119.99693 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00273 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46986 * 59.99680 * 16 14 12 18 18 H 1.48494 * 109.47317 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.46989 * 299.99631 * 16 14 12 20 20 C 1.40000 * 119.80142 * 359.47316 * 6 5 4 21 21 C 1.38083 * 119.82219 * 0.24610 * 20 6 5 22 22 O 1.35999 * 119.98730 * 179.97438 * 21 20 6 23 23 C 1.42903 * 116.99779 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.47375 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47125 * 299.99798 * 1 2 3 26 26 H 1.09001 * 109.47030 * 59.99781 * 1 2 3 27 27 H 1.07995 * 119.91300 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.02040 * 180.27933 * 5 4 3 29 29 H 1.08002 * 120.00215 * 136.92211 * 7 6 5 30 30 H 1.08003 * 119.99905 * 165.44873 * 8 7 6 31 31 H 0.96998 * 120.00565 * 0.02562 * 11 9 8 32 32 H 0.97003 * 119.99672 * 179.97438 * 15 14 12 33 33 H 1.07996 * 120.08448 * 180.27643 * 20 6 5 34 34 H 1.08995 * 109.47060 * 179.97438 * 23 22 21 35 35 H 1.08992 * 109.47186 * 300.00029 * 23 22 21 36 36 H 1.09004 * 109.46757 * 59.99614 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 1.2873 2.3735 -0.0005 5 6 1.9067 3.6038 0.0052 6 6 3.3044 3.6831 0.0000 7 6 3.9681 4.9941 0.0005 8 6 3.5075 5.9850 -0.7947 9 6 2.5948 5.6896 -1.8389 10 8 2.3162 4.5320 -2.0949 11 7 2.0355 6.6900 -2.5480 12 6 1.1548 6.4052 -3.5547 13 1 0.9078 5.3786 -3.7818 14 6 0.5779 7.4375 -4.2870 15 7 0.8787 8.6860 -4.0111 16 14 -0.6244 7.0484 -5.6625 17 1 -1.7866 6.3079 -5.1094 18 1 -1.0937 8.3136 -6.2824 19 1 0.0509 6.2144 -6.6891 20 6 4.0680 2.5097 0.0001 21 6 3.4384 1.2807 0.0001 22 8 4.1768 0.1387 -0.0003 23 6 5.5983 0.2853 -0.0003 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2090 2.3135 -0.0005 28 1 1.3145 4.5069 0.0094 29 1 4.8240 5.1658 0.6364 30 1 3.8312 7.0024 -0.6321 31 1 2.2575 7.6120 -2.3444 32 1 0.4766 9.4059 -4.5220 33 1 5.1465 2.5655 0.0005 34 1 6.0651 -0.6997 -0.0003 35 1 5.9069 0.8339 -0.8900 36 1 5.9069 0.8334 0.8899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033774594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:37 Heat of formation + Delta-G solvation = -52.438740 kcal Electronic energy + Delta-G solvation = -21105.614666 eV Core-core repulsion = 17749.889315 eV Total energy + Delta-G solvation = -3355.725351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14083 -38.61872 -38.11963 -36.44709 -34.13220 -32.49083 -31.36802 -29.91055 -29.19528 -27.04993 -26.79051 -25.28875 -22.95887 -21.63791 -20.90645 -18.75137 -18.15541 -17.61623 -16.77978 -16.31432 -15.86506 -15.74787 -15.00128 -14.71493 -14.48856 -14.18141 -14.13891 -13.73146 -13.13373 -13.10076 -12.74497 -12.35180 -12.16454 -11.85707 -11.61580 -11.58473 -11.17378 -10.94925 -10.92875 -10.67778 -10.58638 -10.49612 -10.33407 -9.65547 -8.82946 -8.36824 -8.23518 -7.97082 -6.88379 -6.59898 -3.87685 1.29504 1.92554 2.45839 3.16680 3.17983 3.22609 3.57836 3.59455 4.07817 4.30250 4.40712 5.09536 5.17492 5.19795 5.28376 5.29415 5.31227 5.34270 5.36165 5.53416 5.59133 5.65956 5.77205 5.82258 5.94599 6.05715 6.23995 6.53089 6.73685 6.84846 6.94524 7.15612 7.23772 7.38368 7.39018 7.96176 7.98002 8.52193 9.06810 9.43906 10.05194 10.56286 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.004706 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.436491 B = 5947.821837 C = 6766.808301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.095 3.905 4 C -0.182 4.182 5 C -0.022 4.022 6 C -0.033 4.033 7 C -0.083 4.083 8 C -0.169 4.169 9 C 0.442 3.558 10 O -0.588 6.588 11 N -0.541 5.541 12 C -0.288 4.288 13 H 0.107 0.893 14 C 0.022 3.978 15 N -0.887 5.887 16 Si 0.933 3.067 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.271 1.271 20 C -0.161 4.161 21 C 0.077 3.923 22 O -0.314 6.314 23 C 0.030 3.970 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.392 0.608 32 H 0.276 0.724 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -9.182 9.382 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.050 3.950 4 C -0.201 4.201 5 C -0.041 4.041 6 C -0.034 4.034 7 C -0.106 4.106 8 C -0.191 4.191 9 C 0.233 3.767 10 O -0.476 6.476 11 N -0.174 5.174 12 C -0.419 4.419 13 H 0.125 0.875 14 C -0.181 4.181 15 N -0.526 5.526 16 Si 0.760 3.240 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.179 4.179 21 C 0.032 3.968 22 O -0.228 6.228 23 C -0.066 4.066 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.226 0.774 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.874 -10.090 9.065 14.106 hybrid contribution -0.422 1.038 -0.819 1.387 sum 3.452 -9.052 8.246 12.722 Atomic orbital electron populations 1.22984 0.79226 1.03175 1.01293 1.86048 1.20527 1.26679 1.89430 1.18238 0.88925 0.84722 1.03121 1.20802 0.99340 0.91520 1.08406 1.20807 0.93294 0.96510 0.93514 1.18455 0.92850 0.91999 1.00061 1.21890 0.98010 0.91953 0.98708 1.22243 1.00944 0.98767 0.97109 1.16823 0.86800 0.86302 0.86765 1.90744 1.66229 1.19014 1.71588 1.42101 1.37357 1.08327 1.29580 1.19803 1.18046 0.95224 1.08777 0.87504 1.25406 0.98806 0.94608 0.99304 1.69580 1.43225 0.98913 1.40927 0.85863 0.80113 0.77696 0.80342 1.19671 1.20776 1.19663 1.20983 0.99328 0.90589 1.07049 1.17872 0.87971 0.85559 1.05385 1.86103 1.18076 1.28660 1.89995 1.22946 0.79562 1.03054 1.01025 0.88835 0.93036 0.92707 0.85501 0.86262 0.86128 0.86659 0.77400 0.91380 0.85503 0.88883 0.92962 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.33 10.26 -33.85 -0.35 -5.68 16 3 C 0.10 1.75 6.71 -38.90 -0.26 1.49 16 4 C -0.18 -3.30 9.01 -39.53 -0.36 -3.66 16 5 C -0.02 -0.44 6.75 -39.10 -0.26 -0.70 16 6 C -0.03 -0.61 4.43 -105.06 -0.47 -1.08 16 7 C -0.08 -1.40 9.79 -37.16 -0.36 -1.76 16 8 C -0.17 -3.15 9.66 -39.32 -0.38 -3.53 16 9 C 0.44 10.41 6.56 -14.90 -0.10 10.32 16 10 O -0.59 -15.45 11.87 5.11 0.06 -15.39 16 11 N -0.54 -13.52 5.26 -13.56 -0.07 -13.59 16 12 C -0.29 -7.82 9.68 -15.04 -0.15 -7.96 16 13 H 0.11 3.04 7.15 -52.49 -0.38 2.67 16 14 C 0.02 0.58 5.50 -17.44 -0.10 0.49 16 15 N -0.89 -23.35 13.05 55.50 0.72 -22.62 16 16 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C -0.16 -2.76 8.78 -38.98 -0.34 -3.10 16 21 C 0.08 1.39 6.69 -39.19 -0.26 1.12 16 22 O -0.31 -5.22 10.27 -34.41 -0.35 -5.57 16 23 C 0.03 0.34 9.81 101.05 0.99 1.33 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 26 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 27 H 0.13 2.02 6.27 -52.49 -0.33 1.69 16 28 H 0.12 2.40 7.13 -52.49 -0.37 2.03 16 29 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 31 H 0.39 9.38 7.85 -40.82 -0.32 9.06 16 32 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.13 1.82 6.28 -52.49 -0.33 1.49 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 36 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -32.01 310.78 -5.52 -37.53 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.14 Total: 10.93 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.05 Total: -5.71 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.65 Total: -36.22 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.64 Total: -26.64 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.01 -5.52 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033774594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.909 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds