Wall clock time and date at job start Mon Mar 30 2020 02:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35819 * 117.00263 * 2 1 4 4 C 1.38873 * 119.89898 * 359.97438 * 3 2 1 5 5 C 1.37741 * 120.17709 * 179.72194 * 4 3 2 6 6 C 1.39998 * 119.97147 * 0.55156 * 5 4 3 7 7 C 1.46937 * 120.09914 * 179.74800 * 6 5 4 8 8 C 1.35145 * 119.99956 * 316.92054 * 7 6 5 9 9 C 1.41797 * 119.99835 * 345.71808 * 8 7 6 10 10 O 1.21785 * 120.00294 * 353.56497 * 9 8 7 11 11 N 1.34774 * 119.99774 * 173.55951 * 9 8 7 12 12 C 1.36752 * 119.99983 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00187 * 359.97438 * 12 11 9 14 14 C 1.39093 * 120.00307 * 180.02562 * 12 11 9 15 15 N 1.31345 * 119.99693 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00273 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46986 * 59.99680 * 16 14 12 18 18 H 1.48494 * 109.47317 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.46989 * 299.99631 * 16 14 12 20 20 C 1.40000 * 119.80142 * 359.47316 * 6 5 4 21 21 C 1.38083 * 119.82219 * 0.24610 * 20 6 5 22 22 O 1.35999 * 119.98730 * 179.97438 * 21 20 6 23 23 C 1.42903 * 116.99779 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.47375 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47125 * 299.99798 * 1 2 3 26 26 H 1.09001 * 109.47030 * 59.99781 * 1 2 3 27 27 H 1.07995 * 119.91300 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.02040 * 180.27933 * 5 4 3 29 29 H 1.08002 * 120.00215 * 136.92211 * 7 6 5 30 30 H 1.08003 * 119.99905 * 165.44873 * 8 7 6 31 31 H 0.96998 * 120.00565 * 0.02562 * 11 9 8 32 32 H 0.97003 * 119.99672 * 179.97438 * 15 14 12 33 33 H 1.07996 * 120.08448 * 180.27643 * 20 6 5 34 34 H 1.08995 * 109.47060 * 179.97438 * 23 22 21 35 35 H 1.08992 * 109.47186 * 300.00029 * 23 22 21 36 36 H 1.09004 * 109.46757 * 59.99614 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 1.2873 2.3735 -0.0005 5 6 1.9067 3.6038 0.0052 6 6 3.3044 3.6831 0.0000 7 6 3.9681 4.9941 0.0005 8 6 3.5075 5.9850 -0.7947 9 6 2.5948 5.6896 -1.8389 10 8 2.3162 4.5320 -2.0949 11 7 2.0355 6.6900 -2.5480 12 6 1.1548 6.4052 -3.5547 13 1 0.9078 5.3786 -3.7818 14 6 0.5779 7.4375 -4.2870 15 7 0.8787 8.6860 -4.0111 16 14 -0.6244 7.0484 -5.6625 17 1 -1.7866 6.3079 -5.1094 18 1 -1.0937 8.3136 -6.2824 19 1 0.0509 6.2144 -6.6891 20 6 4.0680 2.5097 0.0001 21 6 3.4384 1.2807 0.0001 22 8 4.1768 0.1387 -0.0003 23 6 5.5983 0.2853 -0.0003 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2090 2.3135 -0.0005 28 1 1.3145 4.5069 0.0094 29 1 4.8240 5.1658 0.6364 30 1 3.8312 7.0024 -0.6321 31 1 2.2575 7.6120 -2.3444 32 1 0.4766 9.4059 -4.5220 33 1 5.1465 2.5655 0.0005 34 1 6.0651 -0.6997 -0.0003 35 1 5.9069 0.8339 -0.8900 36 1 5.9069 0.8334 0.8899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033774594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:37 Heat of formation + Delta-G solvation = -73.878322 kcal Electronic energy + Delta-G solvation = -21106.544356 eV Core-core repulsion = 17749.889315 eV Total energy + Delta-G solvation = -3356.655041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48159 -40.35081 -39.34173 -37.88763 -35.97980 -34.02480 -33.28112 -31.26207 -30.52009 -28.12771 -28.01724 -27.03952 -24.51168 -22.94715 -22.43500 -20.43719 -19.76215 -19.15920 -18.25780 -17.63655 -17.36001 -16.95364 -16.54055 -16.09803 -15.89086 -15.80676 -15.42009 -15.26475 -14.87396 -14.57406 -14.08965 -13.82510 -13.44265 -13.39532 -12.97336 -12.95787 -12.80396 -12.45661 -12.19061 -12.11239 -12.02564 -11.99042 -11.87224 -11.52082 -10.31210 -10.18681 -10.02732 -9.48072 -8.52824 -8.32564 -5.92051 -0.13312 0.51846 1.01951 1.39659 1.43856 1.50405 2.28118 2.40337 2.43769 2.57536 2.91680 3.36328 3.48700 3.85952 3.91168 4.12554 4.30144 4.37588 4.39385 4.41280 4.45663 4.49529 4.61168 4.68706 4.70272 4.76422 4.78070 5.10141 5.27891 5.35300 5.41624 5.49631 5.78013 5.78695 6.06401 6.17052 6.60384 6.69268 7.12205 7.56647 8.17978 8.64773 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.004706 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.436491 B = 5947.821837 C = 6766.808301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.083 3.917 4 C -0.191 4.191 5 C -0.043 4.043 6 C -0.061 4.061 7 C -0.039 4.039 8 C -0.200 4.200 9 C 0.450 3.550 10 O -0.618 6.618 11 N -0.559 5.559 12 C -0.325 4.325 13 H 0.080 0.920 14 C -0.012 4.012 15 N -0.913 5.913 16 Si 0.992 3.008 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.273 1.273 20 C -0.155 4.155 21 C 0.067 3.933 22 O -0.332 6.332 23 C 0.018 3.982 24 H 0.124 0.876 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.174 0.826 30 H 0.149 0.851 31 H 0.395 0.605 32 H 0.280 0.720 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.054 0.946 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -10.049 10.435 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.242 6.242 3 C 0.038 3.962 4 C -0.209 4.209 5 C -0.062 4.062 6 C -0.061 4.061 7 C -0.060 4.060 8 C -0.221 4.221 9 C 0.242 3.758 10 O -0.508 6.508 11 N -0.194 5.194 12 C -0.455 4.455 13 H 0.098 0.902 14 C -0.212 4.212 15 N -0.553 5.553 16 Si 0.815 3.185 17 H -0.196 1.196 18 H -0.193 1.193 19 H -0.198 1.198 20 C -0.174 4.174 21 C 0.022 3.978 22 O -0.246 6.246 23 C -0.076 4.076 24 H 0.142 0.858 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.157 0.843 28 H 0.119 0.881 29 H 0.191 0.809 30 H 0.166 0.834 31 H 0.229 0.771 32 H 0.089 0.911 33 H 0.177 0.823 34 H 0.138 0.862 35 H 0.073 0.927 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.297 -10.964 10.141 15.847 hybrid contribution -0.733 0.997 -0.933 1.550 sum 4.564 -9.968 9.208 14.316 Atomic orbital electron populations 1.23290 0.77045 1.05378 1.01711 1.86027 1.22848 1.26124 1.89231 1.18502 0.89699 0.85140 1.02859 1.20971 1.00239 0.91370 1.08361 1.20815 0.94121 0.96284 0.94939 1.18811 0.92782 0.93592 1.00926 1.22480 0.97129 0.89938 0.96501 1.22229 1.01413 1.01182 0.97279 1.17665 0.85858 0.85492 0.86774 1.90724 1.67066 1.20396 1.72574 1.42067 1.38398 1.08649 1.30241 1.19651 1.20511 0.94404 1.10978 0.90166 1.26082 0.99900 0.94336 1.00924 1.69634 1.44339 0.99339 1.42000 0.85005 0.78001 0.77849 0.77624 1.19622 1.19309 1.19841 1.21277 1.00825 0.89659 1.05599 1.18147 0.88322 0.86486 1.04853 1.86088 1.20562 1.28233 1.89764 1.23313 0.76975 1.05275 1.02027 0.85803 0.91656 0.93218 0.84273 0.88093 0.80893 0.83377 0.77107 0.91060 0.82322 0.86231 0.92696 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.33 -10.94 10.26 -77.49 -0.80 -11.74 16 3 C 0.08 3.04 6.71 22.71 0.15 3.19 16 4 C -0.19 -6.99 9.01 22.30 0.20 -6.79 16 5 C -0.04 -1.68 6.75 22.58 0.15 -1.52 16 6 C -0.06 -2.15 4.43 -20.15 -0.09 -2.24 16 7 C -0.04 -1.20 9.79 23.84 0.23 -0.96 16 8 C -0.20 -7.12 9.66 22.44 0.22 -6.91 16 9 C 0.45 21.49 6.56 85.12 0.56 22.05 16 10 O -0.62 -33.28 11.87 -4.62 -0.05 -33.34 16 11 N -0.56 -28.82 5.26 -314.99 -1.66 -30.48 16 12 C -0.33 -18.38 9.68 84.13 0.81 -17.56 16 13 H 0.08 4.84 7.15 -2.91 -0.02 4.82 16 14 C -0.01 -0.62 5.50 84.97 0.47 -0.15 16 15 N -0.91 -48.89 13.05 21.69 0.28 -48.61 16 16 Si 0.99 42.69 29.55 68.60 2.03 44.71 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C -0.16 -4.96 8.78 22.66 0.20 -4.76 16 21 C 0.07 2.32 6.69 22.52 0.15 2.47 16 22 O -0.33 -10.38 10.27 -79.51 -0.82 -11.19 16 23 C 0.02 0.37 9.81 113.37 1.11 1.48 16 24 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.06 1.35 7.65 -2.38 -0.02 1.34 16 26 H 0.05 1.22 7.65 -2.39 -0.02 1.20 16 27 H 0.14 4.52 6.27 -2.91 -0.02 4.50 16 28 H 0.10 4.23 7.13 -2.91 -0.02 4.21 16 29 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 31 H 0.40 19.41 7.85 -92.71 -0.73 18.69 16 32 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.16 3.90 6.28 -2.91 -0.02 3.88 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.07 7.66 -2.39 -0.02 1.05 16 36 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 Total: -1.00 -71.85 310.78 4.65 -67.20 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.39 Total: 33.57 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.28 Total: -10.12 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.38 Total: -79.09 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -1.67 Total: -56.27 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -71.85 4.65 -67.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033774594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.682 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds