Wall clock time and date at job start Mon Mar 30 2020 02:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99685 * 2 1 4 4 C 1.50703 * 109.47550 * 269.99981 * 3 2 1 5 5 H 1.08004 * 119.99315 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00055 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00431 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99547 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46922 * 60.00199 * 8 6 4 10 10 H 1.48500 * 109.46622 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47161 * 300.00225 * 8 6 4 12 12 C 1.34771 * 120.00351 * 180.02562 * 2 1 3 13 13 O 1.21588 * 120.00537 * 184.41565 * 12 2 1 14 14 C 1.47548 * 119.99807 * 4.41690 * 12 2 1 15 15 C 1.39762 * 120.14381 * 310.80463 * 14 12 2 16 16 C 1.37742 * 119.95646 * 179.97438 * 15 14 12 17 17 C 1.38486 * 120.32936 * 0.07599 * 16 15 14 18 18 C 1.38594 * 120.40920 * 0.25584 * 17 16 15 19 19 C 1.38987 * 119.90749 * 359.36883 * 18 17 16 20 20 O 1.35815 * 120.87270 * 180.54894 * 19 18 17 21 21 C 1.43178 * 116.73497 * 342.96844 * 20 19 18 22 22 C 1.53471 * 108.24902 * 46.16928 * 21 20 19 23 23 O 1.36144 * 119.36698 * 179.97438 * 18 17 16 24 24 H 1.08996 * 109.47410 * 273.01973 * 1 2 3 25 25 H 1.08997 * 109.47124 * 33.02084 * 1 2 3 26 26 H 1.09006 * 109.47336 * 153.02218 * 1 2 3 27 27 H 1.09003 * 109.47627 * 30.00339 * 3 2 1 28 28 H 1.09008 * 109.47035 * 149.99971 * 3 2 1 29 29 H 0.96999 * 120.00433 * 179.97438 * 7 6 4 30 30 H 1.08004 * 120.02064 * 359.96327 * 15 14 12 31 31 H 1.08002 * 119.83947 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.79328 * 179.97438 * 17 16 15 33 33 H 1.09006 * 109.70292 * 165.85345 * 21 20 19 34 34 H 1.08998 * 109.71253 * 286.47572 * 21 20 19 35 35 H 1.09003 * 109.71121 * 60.01209 * 22 21 20 36 36 H 1.09003 * 109.70929 * 180.59444 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5549 3.6172 -0.6731 8 14 3.4387 3.4165 -3.4339 9 1 2.1414 3.5944 -4.1342 10 1 4.1821 4.7020 -3.4338 11 1 4.2410 2.3813 -4.1336 12 6 2.1389 -1.1671 -0.0005 13 8 3.3521 -1.1687 0.0805 14 6 1.4045 -2.4430 -0.0995 15 6 0.3111 -2.6900 0.7353 16 6 -0.3720 -3.8823 0.6392 17 6 0.0197 -4.8406 -0.2805 18 6 1.1060 -4.6135 -1.1107 19 6 1.8002 -3.4121 -1.0306 20 8 2.8606 -3.1645 -1.8423 21 6 3.4528 -4.2950 -2.4913 22 6 2.3265 -5.1563 -3.0788 23 8 1.4730 -5.5704 -2.0069 24 1 -0.3634 0.0541 1.0262 25 1 -0.3633 0.8616 -0.5600 26 1 -0.3634 -0.9159 -0.4662 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.0323 4.4428 -0.8503 30 1 0.0022 -1.9467 1.4554 31 1 -1.2169 -4.0710 1.2850 32 1 -0.5219 -5.7725 -0.3482 33 1 4.1117 -3.9563 -3.2909 34 1 4.0220 -4.8781 -1.7674 35 1 1.7541 -4.5716 -3.7990 36 1 2.7514 -6.0313 -3.5707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036330551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:00 Heat of formation + Delta-G solvation = -69.284102 kcal Electronic energy + Delta-G solvation = -21766.088971 eV Core-core repulsion = 18409.633151 eV Total energy + Delta-G solvation = -3356.455820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.28429 -39.06820 -37.35492 -36.98700 -34.73852 -32.62635 -31.23556 -30.83459 -28.47301 -27.67159 -25.89853 -24.80332 -23.91724 -22.18729 -20.97578 -19.37817 -18.24013 -17.46925 -16.98108 -16.45837 -16.04871 -15.34703 -15.23241 -14.90693 -14.71464 -14.43757 -14.30833 -14.12334 -13.68556 -13.11552 -12.81523 -12.51467 -12.17529 -12.09206 -11.81107 -11.48761 -11.25513 -11.09667 -11.05455 -10.87605 -10.60838 -10.52584 -10.12558 -9.60977 -8.95323 -8.52161 -8.39082 -8.06094 -7.58710 -6.00629 -4.05046 1.07439 1.32590 2.97669 3.22594 3.33908 3.36356 3.38094 3.42828 3.76083 4.07935 4.20962 4.47000 4.65048 4.74304 4.83899 4.98737 5.10680 5.18174 5.29839 5.33936 5.40473 5.45309 5.70594 5.76800 5.95711 6.06354 6.13183 6.28534 6.38081 6.57669 6.89118 7.10325 7.42378 7.49122 7.58584 7.96212 8.27516 8.44146 8.93633 9.12786 9.59594 11.07469 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.005603 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.961504 B = 4995.757041 C = 5835.788512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.595 5.595 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.554 3.446 13 O -0.525 6.525 14 C -0.112 4.112 15 C -0.088 4.088 16 C -0.126 4.126 17 C -0.103 4.103 18 C 0.038 3.962 19 C 0.098 3.902 20 O -0.281 6.281 21 C 0.019 3.981 22 C 0.020 3.980 23 O -0.309 6.309 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 -17.395 -1.001 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.327 5.327 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.340 3.660 13 O -0.402 6.402 14 C -0.116 4.116 15 C -0.107 4.107 16 C -0.144 4.144 17 C -0.122 4.122 18 C -0.007 4.007 19 C 0.050 3.950 20 O -0.194 6.194 21 C -0.057 4.057 22 C -0.056 4.056 23 O -0.224 6.224 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.553 -17.185 -0.968 18.796 hybrid contribution 0.272 0.309 -1.234 1.301 sum -7.281 -16.876 -2.202 18.511 Atomic orbital electron populations 1.21822 0.81491 1.02732 1.00461 1.48054 1.06213 1.07446 1.71024 1.19313 0.92664 0.77794 0.97558 1.21412 1.36495 1.06254 0.92301 0.92504 1.24921 0.95364 0.96365 0.97395 1.69921 1.38374 1.14407 1.30743 0.86562 0.78344 0.77772 0.84765 1.20260 1.21149 1.20223 1.17824 0.87109 0.82946 0.78132 1.90759 1.13297 1.86841 1.49307 1.19623 0.98783 0.96211 0.96975 1.21218 0.93394 0.97714 0.98330 1.20777 1.01013 0.93197 0.99397 1.20468 0.94498 1.00700 0.96513 1.18761 0.97107 0.89384 0.95402 1.18840 0.89200 0.93627 0.93292 1.86513 1.42783 1.32504 1.57613 1.23676 0.95280 0.88168 0.98583 1.23652 0.92045 1.01384 0.88481 1.86270 1.65617 1.33766 1.36709 0.93553 0.90942 0.91908 0.94799 0.93630 0.92683 0.84358 0.84696 0.84812 0.85927 0.90376 0.90424 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 9.09 59.85 0.54 1.88 16 2 N -0.60 -13.49 2.86 -184.19 -0.53 -14.02 16 3 C 0.25 6.67 5.21 -5.19 -0.03 6.64 16 4 C -0.53 -15.39 9.39 -34.44 -0.32 -15.72 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 8 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.55 12.83 6.92 -12.47 -0.09 12.74 16 13 O -0.53 -14.44 16.06 -5.18 -0.08 -14.52 16 14 C -0.11 -2.06 4.90 -104.83 -0.51 -2.58 16 15 C -0.09 -1.23 7.60 -39.19 -0.30 -1.53 16 16 C -0.13 -1.42 10.02 -39.67 -0.40 -1.81 16 17 C -0.10 -1.24 9.95 -39.36 -0.39 -1.63 16 18 C 0.04 0.56 6.49 -39.17 -0.25 0.31 16 19 C 0.10 1.73 6.49 -38.61 -0.25 1.48 16 20 O -0.28 -5.27 9.40 -41.76 -0.39 -5.67 16 21 C 0.02 0.24 7.26 37.40 0.27 0.51 16 22 C 0.02 0.21 7.26 37.40 0.27 0.48 16 23 O -0.31 -4.05 10.42 -33.02 -0.34 -4.40 16 24 H 0.05 0.65 7.56 -51.93 -0.39 0.26 16 25 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 26 H 0.06 0.94 5.68 -51.93 -0.29 0.65 16 27 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.05 1.39 7.37 -51.92 -0.38 1.00 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.14 1.70 6.58 -52.48 -0.35 1.35 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -36.39 307.08 -6.89 -43.28 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.34 Total: -2.72 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.55 Total: 2.46 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.21 Total: -40.33 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.82 Total: -24.59 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.39 -6.89 -43.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036330551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.004 kcal (2) G-P(sol) polarization free energy of solvation -36.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds