Wall clock time and date at job start Mon Mar 30 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99685 * 2 1 4 4 C 1.50703 * 109.47550 * 269.99981 * 3 2 1 5 5 H 1.08004 * 119.99315 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00055 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00431 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99547 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46922 * 60.00199 * 8 6 4 10 10 H 1.48500 * 109.46622 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47161 * 300.00225 * 8 6 4 12 12 C 1.34771 * 120.00351 * 180.02562 * 2 1 3 13 13 O 1.21588 * 120.00537 * 184.41565 * 12 2 1 14 14 C 1.47548 * 119.99807 * 4.41690 * 12 2 1 15 15 C 1.39762 * 120.14381 * 310.80463 * 14 12 2 16 16 C 1.37742 * 119.95646 * 179.97438 * 15 14 12 17 17 C 1.38486 * 120.32936 * 0.07599 * 16 15 14 18 18 C 1.38594 * 120.40920 * 0.25584 * 17 16 15 19 19 C 1.38987 * 119.90749 * 359.36883 * 18 17 16 20 20 O 1.35815 * 120.87270 * 180.54894 * 19 18 17 21 21 C 1.43178 * 116.73497 * 342.96844 * 20 19 18 22 22 C 1.53471 * 108.24902 * 46.16928 * 21 20 19 23 23 O 1.36144 * 119.36698 * 179.97438 * 18 17 16 24 24 H 1.08996 * 109.47410 * 273.01973 * 1 2 3 25 25 H 1.08997 * 109.47124 * 33.02084 * 1 2 3 26 26 H 1.09006 * 109.47336 * 153.02218 * 1 2 3 27 27 H 1.09003 * 109.47627 * 30.00339 * 3 2 1 28 28 H 1.09008 * 109.47035 * 149.99971 * 3 2 1 29 29 H 0.96999 * 120.00433 * 179.97438 * 7 6 4 30 30 H 1.08004 * 120.02064 * 359.96327 * 15 14 12 31 31 H 1.08002 * 119.83947 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.79328 * 179.97438 * 17 16 15 33 33 H 1.09006 * 109.70292 * 165.85345 * 21 20 19 34 34 H 1.08998 * 109.71253 * 286.47572 * 21 20 19 35 35 H 1.09003 * 109.71121 * 60.01209 * 22 21 20 36 36 H 1.09003 * 109.70929 * 180.59444 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5549 3.6172 -0.6731 8 14 3.4387 3.4165 -3.4339 9 1 2.1414 3.5944 -4.1342 10 1 4.1821 4.7020 -3.4338 11 1 4.2410 2.3813 -4.1336 12 6 2.1389 -1.1671 -0.0005 13 8 3.3521 -1.1687 0.0805 14 6 1.4045 -2.4430 -0.0995 15 6 0.3111 -2.6900 0.7353 16 6 -0.3720 -3.8823 0.6392 17 6 0.0197 -4.8406 -0.2805 18 6 1.1060 -4.6135 -1.1107 19 6 1.8002 -3.4121 -1.0306 20 8 2.8606 -3.1645 -1.8423 21 6 3.4528 -4.2950 -2.4913 22 6 2.3265 -5.1563 -3.0788 23 8 1.4730 -5.5704 -2.0069 24 1 -0.3634 0.0541 1.0262 25 1 -0.3633 0.8616 -0.5600 26 1 -0.3634 -0.9159 -0.4662 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.0323 4.4428 -0.8503 30 1 0.0022 -1.9467 1.4554 31 1 -1.2169 -4.0710 1.2850 32 1 -0.5219 -5.7725 -0.3482 33 1 4.1117 -3.9563 -3.2909 34 1 4.0220 -4.8781 -1.7674 35 1 1.7541 -4.5716 -3.7990 36 1 2.7514 -6.0313 -3.5707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036330551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:59 Heat of formation + Delta-G solvation = -94.927985 kcal Electronic energy + Delta-G solvation = -21767.200973 eV Core-core repulsion = 18409.633151 eV Total energy + Delta-G solvation = -3357.567823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.38321 -40.64987 -38.50953 -38.15546 -36.62288 -34.77326 -32.25558 -32.09618 -29.73424 -29.40611 -27.49457 -26.01631 -25.45912 -23.82364 -21.95840 -20.82547 -19.48853 -18.73704 -18.54848 -18.23188 -17.53022 -16.99158 -16.36603 -16.21780 -16.02714 -16.01283 -15.64864 -15.30148 -14.87580 -14.60019 -14.21994 -14.02463 -13.82285 -13.51065 -13.26717 -13.06713 -12.90477 -12.65782 -12.56257 -12.22474 -12.13029 -12.03170 -11.76629 -11.69147 -10.70015 -10.66978 -9.68485 -9.45818 -9.13261 -8.24923 -6.40155 -0.07964 0.27440 1.33127 1.38123 1.45635 1.78143 1.99510 2.26584 2.29637 2.41056 2.71387 3.03948 3.21994 3.54193 3.82870 3.87675 3.94569 4.13427 4.24527 4.34514 4.39649 4.51530 4.54077 4.65030 4.69519 4.90884 4.95488 5.08755 5.10812 5.19233 5.36544 5.51970 5.64243 5.80237 5.88801 6.03137 6.34919 6.64792 6.70594 7.23171 7.40052 8.82205 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.005603 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.961504 B = 4995.757041 C = 5835.788512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.602 5.602 3 C 0.260 3.740 4 C -0.547 4.547 5 H 0.047 0.953 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.548 3.452 13 O -0.590 6.590 14 C -0.147 4.147 15 C -0.084 4.084 16 C -0.104 4.104 17 C -0.089 4.089 18 C 0.031 3.969 19 C 0.070 3.930 20 O -0.330 6.330 21 C 0.007 3.993 22 C 0.024 3.976 23 O -0.311 6.311 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.031 0.969 28 H -0.002 1.002 29 H 0.269 0.731 30 H 0.155 0.845 31 H 0.185 0.815 32 H 0.171 0.829 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 -19.485 -1.783 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.333 5.333 3 C 0.139 3.861 4 C -0.585 4.585 5 H 0.066 0.934 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.336 3.664 13 O -0.471 6.471 14 C -0.151 4.151 15 C -0.103 4.103 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.014 4.014 19 C 0.023 3.977 20 O -0.245 6.245 21 C -0.068 4.068 22 C -0.051 4.051 23 O -0.226 6.226 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.049 0.951 28 H 0.017 0.983 29 H 0.078 0.922 30 H 0.172 0.828 31 H 0.202 0.798 32 H 0.188 0.812 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.328 -19.291 -1.748 21.951 hybrid contribution 1.099 0.872 -0.952 1.695 sum -9.229 -18.419 -2.700 20.778 Atomic orbital electron populations 1.22115 0.77846 1.03704 1.02957 1.48071 1.08501 1.05984 1.70718 1.18804 0.91204 0.79933 0.96193 1.21633 1.37345 1.06709 0.92857 0.93448 1.25853 0.94681 0.96225 1.02189 1.70035 1.38626 1.14811 1.33082 0.85470 0.78922 0.77435 0.78997 1.18355 1.19783 1.20566 1.18651 0.86742 0.84571 0.76393 1.90693 1.16270 1.87999 1.52123 1.19408 1.01121 0.94265 1.00293 1.21465 0.91989 0.99450 0.97355 1.21291 1.01028 0.91132 0.98700 1.21036 0.92991 1.01963 0.94750 1.19011 0.97572 0.88473 0.96307 1.19131 0.89787 0.94920 0.93830 1.86425 1.43807 1.35710 1.58537 1.24011 0.96379 0.87481 0.98905 1.23876 0.90852 1.02703 0.87623 1.86259 1.65938 1.33384 1.36996 0.89969 0.91500 0.89554 0.95076 0.98344 0.92228 0.82780 0.79782 0.81205 0.84371 0.90314 0.90347 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.51 9.09 127.77 1.16 3.67 16 2 N -0.60 -28.40 2.86 -854.91 -2.44 -30.84 16 3 C 0.26 14.93 5.21 85.63 0.45 15.38 16 4 C -0.55 -33.38 9.39 25.60 0.24 -33.14 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.58 5.46 84.65 0.46 1.04 16 7 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 8 Si 0.97 46.39 29.54 68.60 2.03 48.41 16 9 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 C 0.55 26.76 6.92 86.70 0.60 27.36 16 13 O -0.59 -35.10 16.06 6.01 0.10 -35.00 16 14 C -0.15 -5.48 4.90 -20.00 -0.10 -5.57 16 15 C -0.08 -2.15 7.60 22.52 0.17 -1.97 16 16 C -0.10 -1.84 10.02 22.21 0.22 -1.61 16 17 C -0.09 -1.76 9.95 22.41 0.22 -1.53 16 18 C 0.03 0.86 6.49 22.53 0.15 1.01 16 19 C 0.07 2.51 6.49 22.90 0.15 2.66 16 20 O -0.33 -13.05 9.40 -69.87 -0.66 -13.71 16 21 C 0.01 0.18 7.26 72.14 0.52 0.70 16 22 C 0.02 0.46 7.26 72.14 0.52 0.99 16 23 O -0.31 -7.43 10.42 -82.92 -0.86 -8.29 16 24 H 0.08 2.13 7.56 -2.39 -0.02 2.11 16 25 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 26 H 0.09 2.46 5.68 -2.38 -0.01 2.44 16 27 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 28 H 0.00 -0.10 7.37 -2.38 -0.02 -0.12 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.15 3.33 6.58 -2.91 -0.02 3.31 16 31 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.14 2.89 8.14 -2.38 -0.02 2.87 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.16 1.65 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -86.48 307.08 4.31 -82.16 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.10 Total: 5.55 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 4.77 Total: 8.96 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.16 Total: -88.10 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -1.42 Total: -57.00 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -86.48 4.31 -82.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036330551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.765 kcal (2) G-P(sol) polarization free energy of solvation -86.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds