Wall clock time and date at job start Mon Mar 30 2020 01:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.47039 * 2 1 4 4 C 1.46499 * 119.99541 * 278.44814 * 3 2 1 5 5 C 1.50700 * 109.46930 * 269.99858 * 4 3 2 6 6 H 1.08004 * 120.00337 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00089 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47227 * 59.99755 * 9 7 5 11 11 H 1.48501 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47099 * 299.99180 * 9 7 5 13 13 C 1.34770 * 119.99959 * 98.44580 * 3 2 1 14 14 O 1.21534 * 119.99924 * 186.56936 * 13 3 2 15 15 C 1.48040 * 120.00376 * 6.56814 * 13 3 2 16 16 C 1.39554 * 119.99358 * 330.21746 * 15 13 3 17 17 C 1.37811 * 120.00834 * 180.21304 * 16 15 13 18 18 C 1.39602 * 119.99191 * 359.51515 * 17 16 15 19 19 C 1.47928 * 120.00618 * 180.27857 * 18 17 16 20 20 O 1.21443 * 120.00110 * 359.97438 * 19 18 17 21 21 O 1.34692 * 119.99900 * 179.97438 * 19 18 17 22 22 C 1.39601 * 119.98921 * 0.25704 * 18 17 16 23 23 C 1.37817 * 119.99493 * 359.97438 * 22 18 17 24 24 H 1.08992 * 109.47134 * 60.00232 * 1 2 3 25 25 H 1.08997 * 109.46734 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47116 * 299.99679 * 1 2 3 27 27 H 1.08997 * 109.47336 * 240.00015 * 2 1 3 28 28 H 1.09004 * 109.47510 * 119.99731 * 2 1 3 29 29 H 1.08996 * 109.47344 * 29.99804 * 4 3 2 30 30 H 1.09002 * 109.47047 * 150.00088 * 4 3 2 31 31 H 0.97005 * 120.00030 * 180.02562 * 8 7 5 32 32 H 1.07999 * 120.00005 * 0.02562 * 16 15 13 33 33 H 1.07996 * 120.00771 * 179.79866 * 17 16 15 34 34 H 0.96697 * 117.00172 * 179.97438 * 21 19 18 35 35 H 1.08002 * 120.00684 * 180.02562 * 22 18 17 36 36 H 1.07999 * 119.99481 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0867 2.1340 -1.2550 5 6 3.4352 1.9236 -1.8940 6 1 4.1679 1.2920 -1.4136 7 6 3.7337 2.5373 -3.0921 8 7 2.8414 3.3060 -3.6774 9 14 5.4050 2.2760 -3.8845 10 1 5.5999 0.8306 -4.1635 11 1 5.4744 3.0390 -5.1566 12 1 6.4690 2.7504 -2.9637 13 6 2.4046 1.9595 1.1545 14 8 2.6958 3.1392 1.1756 15 6 2.4740 1.1576 2.3970 16 6 1.6167 0.0709 2.5748 17 6 1.6781 -0.6731 3.7332 18 6 2.6049 -0.3457 4.7245 19 6 2.6752 -1.1478 5.9655 20 8 1.9264 -2.0910 6.1221 21 8 3.5698 -0.8321 6.9216 22 6 3.4656 0.7386 4.5444 23 6 3.4006 1.4852 3.3878 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.3060 1.7851 -1.9309 30 1 1.9430 3.1950 -1.0507 31 1 3.0512 3.7375 -4.5204 32 1 0.9030 -0.1853 1.8058 33 1 1.0125 -1.5121 3.8722 34 1 3.5781 -1.3850 7.7149 35 1 4.1830 0.9919 5.3110 36 1 4.0662 2.3242 3.2487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042453752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:44 Heat of formation + Delta-G solvation = -72.375194 kcal Electronic energy + Delta-G solvation = -21004.666675 eV Core-core repulsion = 17648.076815 eV Total energy + Delta-G solvation = -3356.589860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74319 -39.87355 -37.81954 -36.33421 -35.73134 -33.06928 -31.59329 -31.22155 -30.15525 -27.45975 -25.28821 -23.37207 -22.86820 -22.65679 -21.29245 -19.20724 -18.44039 -17.57424 -16.91664 -16.44861 -15.86109 -15.79050 -15.31324 -14.79791 -14.64434 -14.14011 -13.94312 -13.80405 -13.28450 -13.04242 -12.71871 -12.36940 -12.15634 -12.07717 -11.81090 -11.65439 -11.25487 -11.12846 -10.97287 -10.90330 -10.69267 -10.54736 -10.18316 -9.72656 -9.25125 -9.11340 -8.92043 -8.47594 -7.77697 -6.09092 -4.14578 0.33771 1.21435 2.21361 2.74615 3.24540 3.29427 3.33955 3.36945 3.67966 3.93541 4.40339 4.58301 4.77943 4.81536 4.90251 5.11520 5.25257 5.28290 5.31248 5.48493 5.59337 5.66294 5.86383 5.89269 6.03494 6.10466 6.16676 6.20602 6.29396 6.44462 6.63211 6.99381 7.37088 7.43846 7.62268 7.86603 8.16675 8.26963 8.78864 8.94760 9.50691 10.98947 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.004133 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.577915 B = 6773.660721 C = 7185.395534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 N -0.583 5.583 4 C 0.245 3.755 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.541 3.459 14 O -0.532 6.532 15 C -0.076 4.076 16 C -0.136 4.136 17 C -0.063 4.063 18 C -0.123 4.123 19 C 0.529 3.471 20 O -0.516 6.516 21 O -0.511 6.511 22 C -0.068 4.068 23 C -0.083 4.083 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.265 0.735 32 H 0.171 0.829 33 H 0.141 0.859 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 -9.643 16.024 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.052 4.052 3 N -0.314 5.314 4 C 0.126 3.874 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.327 3.673 14 O -0.410 6.410 15 C -0.079 4.079 16 C -0.154 4.154 17 C -0.081 4.081 18 C -0.124 4.124 19 C 0.374 3.626 20 O -0.405 6.405 21 O -0.323 6.323 22 C -0.087 4.087 23 C -0.102 4.102 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.188 0.812 33 H 0.159 0.841 34 H 0.272 0.728 35 H 0.160 0.840 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.208 -8.896 15.497 18.004 hybrid contribution 0.954 -0.555 -0.027 1.104 sum -1.253 -9.450 15.470 18.171 Atomic orbital electron populations 1.22298 0.96379 1.02035 1.02954 1.22302 0.93878 0.84757 1.04272 1.48170 1.61131 1.13313 1.08765 1.19348 0.97218 0.92739 0.78070 1.21390 0.99800 1.29960 1.05870 0.92427 1.24928 0.97320 0.94807 0.96903 1.69923 1.34412 1.30920 1.17945 0.86545 0.84098 0.78197 0.78517 1.20208 1.21121 1.20140 1.18194 0.78907 0.87081 0.83096 1.90762 1.49384 1.15406 1.85427 1.20647 0.96253 0.95340 0.95694 1.22503 1.00676 0.94253 0.97919 1.21228 0.96213 0.99227 0.91474 1.19149 1.01569 0.98581 0.93135 1.21006 0.76610 0.81807 0.83187 1.90876 1.41343 1.28959 1.79350 1.84567 1.57007 1.59947 1.30785 1.21400 0.97070 0.92882 0.97311 1.21297 0.97697 0.99322 0.91843 0.91134 0.91538 0.92355 0.89931 0.88810 0.94651 0.93498 0.92572 0.81183 0.84120 0.72795 0.84039 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.14 37.16 0.34 -1.93 16 2 C 0.07 1.10 5.58 -4.04 -0.02 1.08 16 3 N -0.58 -12.05 2.46 -176.10 -0.43 -12.48 16 4 C 0.24 6.25 5.22 -5.19 -0.03 6.22 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.54 11.23 7.46 -12.24 -0.09 11.14 16 14 O -0.53 -13.21 16.25 5.34 0.09 -13.12 16 15 C -0.08 -1.21 5.59 -104.90 -0.59 -1.80 16 16 C -0.14 -1.76 7.47 -39.25 -0.29 -2.05 16 17 C -0.06 -0.74 9.58 -39.23 -0.38 -1.11 16 18 C -0.12 -1.45 5.88 -104.91 -0.62 -2.06 16 19 C 0.53 5.85 8.28 34.70 0.29 6.14 16 20 O -0.52 -6.89 17.12 -19.22 -0.33 -7.22 16 21 O -0.51 -4.05 12.67 -40.47 -0.51 -4.56 16 22 C -0.07 -0.79 9.60 -39.23 -0.38 -1.17 16 23 C -0.08 -1.17 9.58 -39.24 -0.38 -1.55 16 24 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.71 7.07 -51.93 -0.37 0.34 16 27 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 28 H 0.09 1.25 4.01 -52.14 -0.21 1.04 16 29 H 0.04 0.91 7.85 -51.93 -0.41 0.50 16 30 H 0.05 1.35 7.34 -51.93 -0.38 0.97 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.17 1.99 2.53 -52.49 -0.13 1.86 16 33 H 0.14 1.43 7.64 -52.49 -0.40 1.03 16 34 H 0.41 1.34 9.11 45.56 0.42 1.76 16 35 H 0.14 1.32 7.60 -52.49 -0.40 0.92 16 36 H 0.14 2.03 7.92 -52.49 -0.42 1.62 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -34.32 312.27 -6.43 -40.75 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.10 Total: 1.35 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.56 Total: -0.52 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.30 Total: -37.87 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.76 Total: -24.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.32 -6.43 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042453752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.626 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds