Wall clock time and date at job start Mon Mar 30 2020 01:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.47039 * 2 1 4 4 C 1.46499 * 119.99541 * 278.44814 * 3 2 1 5 5 C 1.50700 * 109.46930 * 269.99858 * 4 3 2 6 6 H 1.08004 * 120.00337 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00089 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47227 * 59.99755 * 9 7 5 11 11 H 1.48501 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47099 * 299.99180 * 9 7 5 13 13 C 1.34770 * 119.99959 * 98.44580 * 3 2 1 14 14 O 1.21534 * 119.99924 * 186.56936 * 13 3 2 15 15 C 1.48040 * 120.00376 * 6.56814 * 13 3 2 16 16 C 1.39554 * 119.99358 * 330.21746 * 15 13 3 17 17 C 1.37811 * 120.00834 * 180.21304 * 16 15 13 18 18 C 1.39602 * 119.99191 * 359.51515 * 17 16 15 19 19 C 1.47928 * 120.00618 * 180.27857 * 18 17 16 20 20 O 1.21443 * 120.00110 * 359.97438 * 19 18 17 21 21 O 1.34692 * 119.99900 * 179.97438 * 19 18 17 22 22 C 1.39601 * 119.98921 * 0.25704 * 18 17 16 23 23 C 1.37817 * 119.99493 * 359.97438 * 22 18 17 24 24 H 1.08992 * 109.47134 * 60.00232 * 1 2 3 25 25 H 1.08997 * 109.46734 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47116 * 299.99679 * 1 2 3 27 27 H 1.08997 * 109.47336 * 240.00015 * 2 1 3 28 28 H 1.09004 * 109.47510 * 119.99731 * 2 1 3 29 29 H 1.08996 * 109.47344 * 29.99804 * 4 3 2 30 30 H 1.09002 * 109.47047 * 150.00088 * 4 3 2 31 31 H 0.97005 * 120.00030 * 180.02562 * 8 7 5 32 32 H 1.07999 * 120.00005 * 0.02562 * 16 15 13 33 33 H 1.07996 * 120.00771 * 179.79866 * 17 16 15 34 34 H 0.96697 * 117.00172 * 179.97438 * 21 19 18 35 35 H 1.08002 * 120.00684 * 180.02562 * 22 18 17 36 36 H 1.07999 * 119.99481 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0867 2.1340 -1.2550 5 6 3.4352 1.9236 -1.8940 6 1 4.1679 1.2920 -1.4136 7 6 3.7337 2.5373 -3.0921 8 7 2.8414 3.3060 -3.6774 9 14 5.4050 2.2760 -3.8845 10 1 5.5999 0.8306 -4.1635 11 1 5.4744 3.0390 -5.1566 12 1 6.4690 2.7504 -2.9637 13 6 2.4046 1.9595 1.1545 14 8 2.6958 3.1392 1.1756 15 6 2.4740 1.1576 2.3970 16 6 1.6167 0.0709 2.5748 17 6 1.6781 -0.6731 3.7332 18 6 2.6049 -0.3457 4.7245 19 6 2.6752 -1.1478 5.9655 20 8 1.9264 -2.0910 6.1221 21 8 3.5698 -0.8321 6.9216 22 6 3.4656 0.7386 4.5444 23 6 3.4006 1.4852 3.3878 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.3060 1.7851 -1.9309 30 1 1.9430 3.1950 -1.0507 31 1 3.0512 3.7375 -4.5204 32 1 0.9030 -0.1853 1.8058 33 1 1.0125 -1.5121 3.8722 34 1 3.5781 -1.3850 7.7149 35 1 4.1830 0.9919 5.3110 36 1 4.0662 2.3242 3.2487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042453752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:44 Heat of formation + Delta-G solvation = -95.671305 kcal Electronic energy + Delta-G solvation = -21005.676871 eV Core-core repulsion = 17648.076815 eV Total energy + Delta-G solvation = -3357.600055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81371 -41.03351 -39.06588 -37.32171 -37.10330 -35.06023 -32.93384 -32.35365 -31.41744 -29.30751 -26.60192 -24.92648 -24.23075 -23.76263 -22.35523 -20.63823 -19.29883 -18.69053 -18.47917 -18.19475 -17.35532 -16.68018 -16.44020 -16.35928 -16.24676 -15.45666 -15.19675 -15.00352 -14.44581 -14.39962 -14.08713 -13.67768 -13.53645 -13.33631 -13.25101 -13.08866 -12.65484 -12.58750 -12.51381 -12.19952 -12.17279 -11.86435 -11.76696 -11.70871 -10.82634 -10.65416 -10.21643 -10.01106 -9.52382 -8.24186 -6.39488 -0.70896 0.22543 1.21463 1.37102 1.40838 1.48389 1.89918 1.99453 2.20713 2.40128 2.71150 3.05704 3.41989 3.70133 3.81698 4.03193 4.04562 4.19337 4.30491 4.34142 4.55168 4.60107 4.84389 4.89471 4.93412 5.01304 5.04471 5.13006 5.18101 5.28295 5.38856 5.52397 5.54893 5.62590 5.79301 6.02848 6.61876 6.70093 6.95388 7.19553 7.35350 8.83014 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.004133 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.577915 B = 6773.660721 C = 7185.395534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 N -0.589 5.589 4 C 0.261 3.739 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.533 3.467 14 O -0.589 6.589 15 C -0.099 4.099 16 C -0.127 4.127 17 C -0.054 4.054 18 C -0.120 4.120 19 C 0.539 3.461 20 O -0.539 6.539 21 O -0.502 6.502 22 C -0.053 4.053 23 C -0.092 4.092 24 H 0.048 0.952 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.028 0.972 30 H 0.001 0.999 31 H 0.268 0.732 32 H 0.183 0.817 33 H 0.163 0.837 34 H 0.436 0.564 35 H 0.169 0.831 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -12.239 17.850 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.057 4.057 3 N -0.318 5.318 4 C 0.140 3.860 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.322 3.678 14 O -0.472 6.472 15 C -0.102 4.102 16 C -0.144 4.144 17 C -0.072 4.072 18 C -0.122 4.122 19 C 0.384 3.616 20 O -0.430 6.430 21 O -0.316 6.316 22 C -0.071 4.071 23 C -0.111 4.111 24 H 0.067 0.933 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.046 0.954 30 H 0.019 0.981 31 H 0.077 0.923 32 H 0.200 0.800 33 H 0.181 0.819 34 H 0.299 0.701 35 H 0.186 0.814 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.676 -11.546 17.360 20.917 hybrid contribution 0.780 0.227 -0.452 0.929 sum -0.897 -11.319 16.908 20.367 Atomic orbital electron populations 1.22263 0.93966 1.04505 1.02273 1.22688 0.95849 0.81851 1.05328 1.48167 1.61320 1.15035 1.07294 1.18791 0.96294 0.90888 0.80069 1.21675 1.00584 1.30104 1.06347 0.92768 1.25848 1.01307 0.94297 0.97454 1.70044 1.36494 1.31668 1.18400 0.85465 0.78890 0.78976 0.77482 1.18474 1.20285 1.20221 1.18982 0.77419 0.86886 0.84467 1.90710 1.51854 1.18025 1.86569 1.20285 0.99116 0.96742 0.94069 1.22495 0.99951 0.93120 0.98874 1.21438 0.96111 0.99140 0.90542 1.19396 1.00912 0.98237 0.93645 1.20721 0.76570 0.81046 0.83256 1.90883 1.42415 1.29892 1.79859 1.84513 1.55551 1.60222 1.31289 1.21549 0.97107 0.91947 0.96512 1.21304 0.97550 0.99700 0.92551 0.93313 0.87386 0.91595 0.90690 0.85951 0.95365 0.98131 0.92298 0.80044 0.81901 0.70140 0.81403 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 9.14 71.98 0.66 -3.49 16 2 C 0.06 1.95 5.58 86.38 0.48 2.43 16 3 N -0.59 -25.28 2.46 -829.33 -2.04 -27.33 16 4 C 0.26 14.09 5.22 85.63 0.45 14.54 16 5 C -0.55 -31.60 9.39 25.60 0.24 -31.36 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.59 5.46 84.65 0.46 1.05 16 8 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 9 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.53 23.15 7.46 86.84 0.65 23.80 16 14 O -0.59 -31.34 16.25 -3.82 -0.06 -31.40 16 15 C -0.10 -3.14 5.59 -20.04 -0.11 -3.25 16 16 C -0.13 -3.01 7.47 22.49 0.17 -2.85 16 17 C -0.05 -1.09 9.58 22.50 0.22 -0.87 16 18 C -0.12 -2.43 5.88 -20.05 -0.12 -2.55 16 19 C 0.54 9.88 8.28 70.39 0.58 10.46 16 20 O -0.54 -12.51 17.12 20.02 0.34 -12.17 16 21 O -0.50 -5.86 12.67 -56.01 -0.71 -6.57 16 22 C -0.05 -1.10 9.60 22.50 0.22 -0.88 16 23 C -0.09 -2.56 9.58 22.49 0.22 -2.35 16 24 H 0.05 1.39 7.92 -2.39 -0.02 1.37 16 25 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.49 7.07 -2.38 -0.02 1.48 16 27 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 28 H 0.12 3.04 4.01 -2.59 -0.01 3.03 16 29 H 0.03 1.54 7.85 -2.39 -0.02 1.52 16 30 H 0.00 0.04 7.34 -2.39 -0.02 0.02 16 31 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 32 H 0.18 3.80 2.53 -2.91 -0.01 3.79 16 33 H 0.16 2.61 7.64 -2.91 -0.02 2.59 16 34 H 0.44 0.99 9.11 -74.06 -0.67 0.32 16 35 H 0.17 2.54 7.60 -2.91 -0.02 2.52 16 36 H 0.13 3.89 7.92 -2.91 -0.02 3.86 16 Total: -1.00 -78.31 312.27 4.40 -73.91 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.46 Total: 7.83 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 4.10 Total: 4.69 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.76 Total: -82.90 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.43 Total: -50.14 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -78.31 4.40 -73.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042453752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.761 kcal (2) G-P(sol) polarization free energy of solvation -78.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds