Wall clock time and date at job start Mon Mar 30 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46992 * 2 1 4 4 C 1.46502 * 119.99938 * 278.39663 * 3 2 1 5 5 C 1.50699 * 109.47140 * 269.99921 * 4 3 2 6 6 H 1.07998 * 120.00091 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99813 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99817 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47127 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47138 * 120.00007 * 9 7 5 12 12 H 1.48503 * 109.47015 * 239.99841 * 9 7 5 13 13 C 1.34772 * 119.99807 * 98.39995 * 3 2 1 14 14 O 1.21592 * 119.99651 * 186.51385 * 13 3 2 15 15 C 1.47603 * 120.00256 * 6.51159 * 13 3 2 16 16 C 1.39708 * 120.08076 * 330.35879 * 15 13 3 17 17 C 1.37764 * 120.00071 * 179.75156 * 16 15 13 18 18 C 1.38858 * 120.22204 * 0.44652 * 17 16 15 19 19 C 1.39547 * 120.05318 * 359.55787 * 18 17 16 20 20 C 1.38122 * 119.98073 * 0.21768 * 19 18 17 21 21 O 1.36536 * 108.59300 * 180.23885 * 19 18 17 22 22 C 1.43983 * 105.44993 * 342.69214 * 21 19 18 23 23 O 1.36358 * 131.35660 * 179.86901 * 18 17 16 24 24 H 1.08998 * 109.47561 * 300.00375 * 1 2 3 25 25 H 1.09003 * 109.47181 * 60.00232 * 1 2 3 26 26 H 1.08996 * 109.47508 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47024 * 240.00170 * 2 1 3 28 28 H 1.08993 * 109.47335 * 119.99850 * 2 1 3 29 29 H 1.08998 * 109.47221 * 30.00625 * 4 3 2 30 30 H 1.08999 * 109.46871 * 149.99885 * 4 3 2 31 31 H 0.97003 * 119.99746 * 179.97438 * 8 7 5 32 32 H 1.07995 * 119.99814 * 359.97438 * 16 15 13 33 33 H 1.08003 * 119.88650 * 180.31054 * 17 16 15 34 34 H 1.08000 * 120.04644 * 180.02562 * 20 19 18 35 35 H 1.09002 * 110.56335 * 268.61040 * 22 21 19 36 36 H 1.09006 * 110.56396 * 145.75909 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0878 2.1336 -1.2551 5 6 3.4368 1.9231 -1.8930 6 1 4.1690 1.2917 -1.4118 7 6 3.7362 2.5366 -3.0909 8 7 2.8448 3.3059 -3.6766 9 14 5.4082 2.2751 -3.8819 10 1 6.2238 1.3738 -3.0289 11 1 5.2310 1.6621 -5.2228 12 1 6.0991 3.5821 -4.0225 13 6 2.4036 1.9597 1.1547 14 8 2.6960 3.1398 1.1754 15 6 2.4707 1.1608 2.3940 16 6 1.6143 0.0715 2.5721 17 6 1.6818 -0.6761 3.7273 18 6 2.5930 -0.3455 4.7216 19 6 3.4512 0.7414 4.5497 20 6 3.3912 1.4918 3.3917 21 8 4.2432 0.8500 5.6565 22 6 3.5853 0.0754 6.6765 23 8 2.8495 -0.9144 5.9340 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3075 1.7847 -1.9316 30 1 1.9439 3.1946 -1.0511 31 1 3.0556 3.7378 -4.5192 32 1 0.9017 -0.1866 1.8028 33 1 1.0222 -1.5208 3.8609 34 1 4.0551 2.3330 3.2574 35 1 2.9072 0.7022 7.2555 36 1 4.3181 -0.4011 7.3278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:39 Heat of formation + Delta-G solvation = -36.423642 kcal Electronic energy + Delta-G solvation = -21389.254406 eV Core-core repulsion = 18034.223522 eV Total energy + Delta-G solvation = -3355.030884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27742 -39.79186 -37.08748 -36.42513 -35.61527 -32.90338 -30.89039 -30.59231 -29.83690 -27.27189 -25.96995 -23.94037 -23.34303 -22.75510 -22.17129 -19.36939 -18.38900 -17.67615 -17.42665 -16.49432 -16.40221 -15.52684 -15.51702 -14.75652 -14.47721 -14.36165 -13.93623 -13.92062 -13.73653 -13.20171 -13.10955 -12.82352 -12.41623 -12.10214 -12.05626 -11.61208 -11.23132 -11.21063 -11.03947 -10.89514 -10.65573 -10.38664 -10.13592 -9.64121 -9.09968 -8.92390 -8.45267 -8.11646 -7.71475 -6.06122 -4.11005 0.82224 1.15875 2.54764 3.17022 3.26560 3.29481 3.37343 3.41495 3.76548 4.00407 4.36332 4.43711 4.47994 4.66692 4.84359 5.00969 5.01712 5.12802 5.28670 5.33334 5.43082 5.52032 5.67776 5.87254 5.93986 6.01300 6.10486 6.16973 6.21083 6.32254 6.47983 6.99074 7.04738 7.42073 7.49425 7.90461 8.20738 8.33180 8.85066 9.00888 9.54322 11.01966 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024663 B = 0.004576 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.042765 B = 6117.091689 C = 6692.843152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 N -0.585 5.585 4 C 0.245 3.755 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.550 3.450 14 O -0.535 6.535 15 C -0.107 4.107 16 C -0.110 4.110 17 C -0.110 4.110 18 C 0.043 3.957 19 C 0.020 3.980 20 C -0.047 4.047 21 O -0.307 6.307 22 C 0.213 3.787 23 O -0.310 6.310 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.177 0.823 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -10.274 16.538 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.052 4.052 3 N -0.315 5.315 4 C 0.126 3.874 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.337 3.663 14 O -0.413 6.413 15 C -0.111 4.111 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.002 4.002 19 C -0.024 4.024 20 C -0.066 4.066 21 O -0.224 6.224 22 C 0.101 3.899 23 O -0.226 6.226 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.193 0.807 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.101 0.899 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.733 -9.622 16.478 19.443 hybrid contribution 1.048 -0.171 -0.252 1.091 sum -2.685 -9.794 16.226 19.142 Atomic orbital electron populations 1.22306 0.96463 1.01965 1.02974 1.22288 0.93780 0.84857 1.04256 1.48116 1.61492 1.13266 1.08651 1.19345 0.97189 0.92773 0.78087 1.21480 0.99811 1.29727 1.05731 0.92306 1.24926 0.97285 0.94857 0.96946 1.69939 1.34331 1.31071 1.17910 0.86445 0.83939 0.78087 0.78982 1.19769 1.20935 1.20850 1.17883 0.78693 0.86896 0.82831 1.90771 1.49510 1.15464 1.85542 1.19970 0.98061 0.97338 0.95685 1.22339 1.00114 0.93529 0.96825 1.20036 0.98213 1.02672 0.91912 1.20058 0.98150 0.93362 0.88629 1.19573 0.93459 0.97910 0.91455 1.20067 0.98829 0.98418 0.89309 1.87392 1.44976 1.70042 1.19969 1.25611 0.91632 0.83594 0.89073 1.87304 1.72050 1.38983 1.24240 0.92318 0.91152 0.91593 0.89963 0.88779 0.94665 0.93490 0.92733 0.80687 0.84289 0.83663 0.89921 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.13 37.16 0.34 -1.90 16 2 C 0.07 1.11 5.58 -4.04 -0.02 1.09 16 3 N -0.58 -12.25 2.46 -176.27 -0.43 -12.68 16 4 C 0.24 6.30 5.22 -5.19 -0.03 6.27 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.55 11.74 7.45 -12.44 -0.09 11.65 16 14 O -0.53 -13.63 16.25 5.28 0.09 -13.54 16 15 C -0.11 -1.80 5.59 -104.97 -0.59 -2.39 16 16 C -0.11 -1.45 7.47 -39.21 -0.29 -1.75 16 17 C -0.11 -1.29 10.04 -39.53 -0.40 -1.69 16 18 C 0.04 0.57 7.16 -38.86 -0.28 0.29 16 19 C 0.02 0.29 7.14 -39.14 -0.28 0.02 16 20 C -0.05 -0.76 9.60 -39.07 -0.38 -1.14 16 21 O -0.31 -4.09 11.41 -45.80 -0.52 -4.62 16 22 C 0.21 1.97 8.88 101.05 0.90 2.87 16 23 O -0.31 -3.68 11.39 -45.22 -0.52 -4.19 16 24 H 0.06 0.70 7.07 -51.93 -0.37 0.33 16 25 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.09 1.26 4.01 -52.21 -0.21 1.05 16 29 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 30 H 0.05 1.37 7.34 -51.93 -0.38 0.99 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.18 2.02 2.52 -52.49 -0.13 1.89 16 33 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.15 2.45 7.91 -52.49 -0.42 2.04 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -33.80 305.15 -6.59 -40.39 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.98 Total: -0.93 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.54 Total: -0.20 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.30 Total: -38.25 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.95 Total: -22.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.80 -6.59 -40.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.966 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds