Wall clock time and date at job start Mon Mar 30 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46992 * 2 1 4 4 C 1.46502 * 119.99938 * 278.39663 * 3 2 1 5 5 C 1.50699 * 109.47140 * 269.99921 * 4 3 2 6 6 H 1.07998 * 120.00091 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99813 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99817 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47127 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47138 * 120.00007 * 9 7 5 12 12 H 1.48503 * 109.47015 * 239.99841 * 9 7 5 13 13 C 1.34772 * 119.99807 * 98.39995 * 3 2 1 14 14 O 1.21592 * 119.99651 * 186.51385 * 13 3 2 15 15 C 1.47603 * 120.00256 * 6.51159 * 13 3 2 16 16 C 1.39708 * 120.08076 * 330.35879 * 15 13 3 17 17 C 1.37764 * 120.00071 * 179.75156 * 16 15 13 18 18 C 1.38858 * 120.22204 * 0.44652 * 17 16 15 19 19 C 1.39547 * 120.05318 * 359.55787 * 18 17 16 20 20 C 1.38122 * 119.98073 * 0.21768 * 19 18 17 21 21 O 1.36536 * 108.59300 * 180.23885 * 19 18 17 22 22 C 1.43983 * 105.44993 * 342.69214 * 21 19 18 23 23 O 1.36358 * 131.35660 * 179.86901 * 18 17 16 24 24 H 1.08998 * 109.47561 * 300.00375 * 1 2 3 25 25 H 1.09003 * 109.47181 * 60.00232 * 1 2 3 26 26 H 1.08996 * 109.47508 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47024 * 240.00170 * 2 1 3 28 28 H 1.08993 * 109.47335 * 119.99850 * 2 1 3 29 29 H 1.08998 * 109.47221 * 30.00625 * 4 3 2 30 30 H 1.08999 * 109.46871 * 149.99885 * 4 3 2 31 31 H 0.97003 * 119.99746 * 179.97438 * 8 7 5 32 32 H 1.07995 * 119.99814 * 359.97438 * 16 15 13 33 33 H 1.08003 * 119.88650 * 180.31054 * 17 16 15 34 34 H 1.08000 * 120.04644 * 180.02562 * 20 19 18 35 35 H 1.09002 * 110.56335 * 268.61040 * 22 21 19 36 36 H 1.09006 * 110.56396 * 145.75909 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0878 2.1336 -1.2551 5 6 3.4368 1.9231 -1.8930 6 1 4.1690 1.2917 -1.4118 7 6 3.7362 2.5366 -3.0909 8 7 2.8448 3.3059 -3.6766 9 14 5.4082 2.2751 -3.8819 10 1 6.2238 1.3738 -3.0289 11 1 5.2310 1.6621 -5.2228 12 1 6.0991 3.5821 -4.0225 13 6 2.4036 1.9597 1.1547 14 8 2.6960 3.1398 1.1754 15 6 2.4707 1.1608 2.3940 16 6 1.6143 0.0715 2.5721 17 6 1.6818 -0.6761 3.7273 18 6 2.5930 -0.3455 4.7216 19 6 3.4512 0.7414 4.5497 20 6 3.3912 1.4918 3.3917 21 8 4.2432 0.8500 5.6565 22 6 3.5853 0.0754 6.6765 23 8 2.8495 -0.9144 5.9340 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3075 1.7847 -1.9316 30 1 1.9439 3.1946 -1.0511 31 1 3.0556 3.7378 -4.5192 32 1 0.9017 -0.1866 1.8028 33 1 1.0222 -1.5208 3.8609 34 1 4.0551 2.3330 3.2574 35 1 2.9072 0.7022 7.2555 36 1 4.3181 -0.4011 7.3278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:39 Heat of formation + Delta-G solvation = -59.443155 kcal Electronic energy + Delta-G solvation = -21390.252607 eV Core-core repulsion = 18034.223522 eV Total energy + Delta-G solvation = -3356.029085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.25147 -41.26790 -38.39181 -37.40210 -37.20735 -34.96679 -32.28554 -31.86367 -30.99198 -29.09942 -26.93519 -25.48711 -24.69149 -23.94634 -23.58929 -20.78673 -19.53700 -18.80818 -18.57315 -18.41662 -17.65859 -17.04651 -16.81897 -16.33139 -15.91924 -15.71513 -15.17548 -15.08262 -14.94076 -14.58443 -14.37608 -14.05837 -13.76768 -13.58614 -13.33046 -13.19560 -13.05478 -12.66627 -12.48303 -12.29873 -12.21571 -12.03217 -11.70495 -11.57425 -10.77479 -10.65180 -10.03896 -9.50273 -9.16483 -8.23544 -6.38269 -0.34727 0.07443 1.36035 1.38526 1.48408 1.52380 1.89618 2.14583 2.38289 2.51701 2.61365 3.06322 3.31546 3.50591 3.78550 3.91003 3.97295 4.05233 4.17374 4.22785 4.35227 4.44237 4.60070 4.78371 4.88462 4.93405 4.97013 5.05249 5.05532 5.12371 5.21184 5.26705 5.44418 5.55652 5.81720 5.99819 6.04711 6.65181 6.72161 7.22370 7.37729 8.83854 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024663 B = 0.004576 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.042765 B = 6117.091689 C = 6692.843152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.063 3.937 3 N -0.589 5.589 4 C 0.260 3.740 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.543 3.457 14 O -0.595 6.595 15 C -0.128 4.128 16 C -0.095 4.095 17 C -0.092 4.092 18 C 0.052 3.948 19 C 0.013 3.987 20 C -0.066 4.066 21 O -0.326 6.326 22 C 0.203 3.797 23 O -0.310 6.310 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.031 0.969 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.196 0.804 33 H 0.185 0.815 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -13.554 18.227 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.058 4.058 3 N -0.318 5.318 4 C 0.139 3.861 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.332 3.668 14 O -0.478 6.478 15 C -0.131 4.131 16 C -0.112 4.112 17 C -0.110 4.110 18 C 0.007 3.993 19 C -0.032 4.032 20 C -0.086 4.086 21 O -0.243 6.243 22 C 0.093 3.907 23 O -0.226 6.226 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.094 0.906 28 H 0.141 0.859 29 H 0.049 0.951 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.212 0.788 33 H 0.202 0.798 34 H 0.140 0.860 35 H 0.125 0.875 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.170 -12.958 18.190 22.720 hybrid contribution 1.167 0.816 -0.618 1.553 sum -3.002 -12.142 17.572 21.569 Atomic orbital electron populations 1.22277 0.93694 1.04694 1.02390 1.22712 0.96022 0.81727 1.05374 1.48116 1.61544 1.15120 1.07029 1.18800 0.96272 0.90931 0.80064 1.21735 1.00611 1.29908 1.06225 0.92965 1.25823 1.01217 0.94357 0.97481 1.70050 1.36348 1.31734 1.18418 0.85380 0.78994 0.78003 0.78497 1.19314 1.19168 1.20770 1.18616 0.77300 0.86645 0.84233 1.90718 1.52111 1.18231 1.86698 1.19539 1.00685 0.98982 0.93938 1.22455 0.98995 0.91853 0.97930 1.20437 0.97608 1.02847 0.90155 1.20306 0.97352 0.92331 0.89317 1.19528 0.94126 0.98230 0.91285 1.19889 0.99325 0.98757 0.90655 1.87374 1.45598 1.70940 1.20387 1.26225 0.92909 0.83532 0.88071 1.87307 1.72097 1.39559 1.23594 0.91366 0.93373 0.87071 0.90631 0.85903 0.95058 0.98163 0.92322 0.78781 0.79804 0.86000 0.87490 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 9.13 71.98 0.66 -3.28 16 2 C 0.06 1.88 5.58 86.38 0.48 2.36 16 3 N -0.59 -25.59 2.46 -829.84 -2.04 -27.63 16 4 C 0.26 14.19 5.22 85.63 0.45 14.63 16 5 C -0.55 -31.89 9.39 25.60 0.24 -31.65 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.61 5.46 84.66 0.46 1.07 16 8 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 9 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 C 0.54 24.40 7.45 86.72 0.65 25.04 16 14 O -0.60 -32.87 16.25 -4.01 -0.07 -32.94 16 15 C -0.13 -4.36 5.59 -20.09 -0.11 -4.47 16 16 C -0.09 -2.24 7.47 22.51 0.17 -2.07 16 17 C -0.09 -1.76 10.04 22.31 0.22 -1.53 16 18 C 0.05 1.21 7.16 22.73 0.16 1.37 16 19 C 0.01 0.36 7.14 22.56 0.16 0.52 16 20 C -0.07 -2.25 9.60 22.60 0.22 -2.03 16 21 O -0.33 -8.22 11.41 -76.47 -0.87 -9.09 16 22 C 0.20 3.07 8.88 113.37 1.01 4.08 16 23 O -0.31 -6.11 11.39 -74.39 -0.85 -6.96 16 24 H 0.07 1.44 7.07 -2.39 -0.02 1.42 16 25 H 0.05 1.33 7.93 -2.39 -0.02 1.31 16 26 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 2.37 8.13 -2.39 -0.02 2.35 16 28 H 0.12 2.98 4.01 -2.65 -0.01 2.96 16 29 H 0.03 1.70 7.86 -2.39 -0.02 1.68 16 30 H 0.00 0.01 7.34 -2.39 -0.02 0.00 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.20 3.77 2.52 -2.91 -0.01 3.76 16 33 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.12 4.54 7.91 -2.91 -0.02 4.52 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.17 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -79.23 305.15 4.36 -74.87 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.11 Total: 6.19 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 4.76 Total: 4.05 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.76 Total: -83.47 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -1.78 Total: -48.98 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -79.23 4.36 -74.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.431 kcal (2) G-P(sol) polarization free energy of solvation -79.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds