Wall clock time and date at job start Mon Mar 30 2020 01:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47388 * 2 1 4 4 C 1.37096 * 119.99907 * 274.13660 * 3 2 1 5 5 H 1.07999 * 119.99437 * 185.21363 * 4 3 2 6 6 C 1.38948 * 120.00014 * 5.21953 * 4 3 2 7 7 N 1.31410 * 120.00155 * 14.19089 * 6 4 3 8 8 Si 1.86803 * 119.99912 * 194.19349 * 6 4 3 9 9 H 1.48495 * 109.47194 * 89.99645 * 8 6 4 10 10 H 1.48493 * 109.47316 * 209.99902 * 8 6 4 11 11 H 1.48505 * 109.47125 * 329.99776 * 8 6 4 12 12 C 1.34776 * 120.00051 * 94.13708 * 3 2 1 13 13 O 1.21292 * 120.00049 * 4.77397 * 12 3 2 14 14 C 1.50703 * 120.00186 * 184.77789 * 12 3 2 15 15 H 1.08997 * 109.74221 * 47.03686 * 14 12 3 16 16 C 1.53472 * 109.70811 * 286.43021 * 14 12 3 17 17 O 1.43169 * 108.25536 * 180.59343 * 16 14 12 18 18 C 1.36100 * 116.71701 * 46.17277 * 17 16 14 19 19 C 1.38708 * 119.40292 * 162.97514 * 18 17 16 20 20 C 1.38194 * 120.06604 * 179.64259 * 19 18 17 21 21 C 1.38249 * 120.11841 * 0.26759 * 20 19 18 22 22 C 1.38200 * 120.10920 * 359.54629 * 21 20 19 23 23 C 1.38704 * 120.06556 * 0.49720 * 22 21 20 24 24 O 1.36099 * 119.39385 * 179.57916 * 23 22 21 25 25 H 1.09003 * 109.46930 * 64.13309 * 1 2 3 26 26 H 1.09001 * 109.47325 * 184.12948 * 1 2 3 27 27 H 1.08995 * 109.47566 * 304.13412 * 1 2 3 28 28 H 1.09002 * 109.47273 * 239.99866 * 2 1 3 29 29 H 1.09000 * 109.47324 * 119.99934 * 2 1 3 30 30 H 0.96997 * 119.99686 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.70794 * 300.27902 * 16 14 12 32 32 H 1.09001 * 109.70921 * 60.85818 * 16 14 12 33 33 H 1.08002 * 119.96536 * 359.66145 * 19 18 17 34 34 H 1.08004 * 119.93869 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.94595 * 179.77696 * 21 20 19 36 36 H 1.08002 * 119.96820 * 180.23867 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1661 2.0560 -1.1842 5 1 2.6048 3.0428 -1.1922 6 6 1.7513 1.4703 -2.3740 7 7 0.9746 0.4106 -2.3490 8 14 2.2978 2.1893 -4.0092 9 1 3.5720 1.5525 -4.4289 10 1 1.2554 1.9341 -5.0354 11 1 2.5007 3.6532 -3.8632 12 6 2.3224 1.9885 1.1641 13 8 2.2748 1.3654 2.2037 14 6 2.7214 3.4417 1.1743 15 1 2.0242 4.0191 0.5673 16 6 4.1425 3.5921 0.6146 17 8 4.4945 4.9793 0.6513 18 6 4.2210 5.6497 1.8038 19 6 4.8391 6.8676 2.0462 20 6 4.5658 7.5634 3.2085 21 6 3.6803 7.0454 4.1353 22 6 3.0582 5.8343 3.8981 23 6 3.3286 5.1304 2.7340 24 8 2.7148 3.9349 2.5184 25 1 -0.3633 0.4484 -0.9247 26 1 -0.3634 -1.0250 0.0740 27 1 -0.3634 0.5766 0.8506 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.6854 0.0016 -3.1796 31 1 4.8406 3.0195 1.2253 32 1 4.1726 3.2317 -0.4137 33 1 5.5343 7.2726 1.3258 34 1 5.0485 8.5113 3.3954 35 1 3.4715 7.5898 5.0443 36 1 2.3639 5.4336 4.6219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:37 Heat of formation + Delta-G solvation = -55.940022 kcal Electronic energy + Delta-G solvation = -21976.448823 eV Core-core repulsion = 18620.571646 eV Total energy + Delta-G solvation = -3355.877178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03270 -38.77162 -37.27628 -36.84877 -35.16548 -31.83381 -31.33362 -30.46421 -29.58989 -27.98337 -25.30664 -24.60487 -22.70165 -22.22986 -20.64940 -19.38152 -18.48651 -17.62679 -17.32288 -16.07345 -15.96909 -15.11544 -14.88754 -14.56435 -14.38823 -14.15700 -14.01160 -13.68072 -13.64178 -12.98466 -12.91478 -12.53952 -11.94104 -11.84206 -11.68056 -11.40090 -11.21121 -11.13045 -10.76486 -10.74162 -10.50946 -10.34084 -10.12068 -9.90200 -9.01861 -8.56289 -8.47867 -7.96625 -7.81282 -6.47518 -4.11690 1.43931 1.48851 2.95938 3.09632 3.11152 3.19814 3.43769 3.62684 3.87675 3.93792 4.53566 4.70167 4.82206 5.05646 5.07088 5.28110 5.40054 5.43604 5.50672 5.67929 5.88008 5.95011 6.05084 6.26352 6.39579 6.51564 6.56565 6.70646 6.78774 6.82367 6.96688 7.08177 7.23889 7.34214 7.56471 7.71724 7.80218 8.25657 8.84651 9.27402 9.67205 10.39923 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.005797 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.683260 B = 4829.080095 C = 5784.666186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.135 3.865 3 N -0.429 5.429 4 C -0.347 4.347 5 H 0.103 0.897 6 C 0.039 3.961 7 N -0.853 5.853 8 Si 0.924 3.076 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.456 3.544 13 O -0.586 6.586 14 C 0.054 3.946 15 H 0.102 0.898 16 C 0.030 3.970 17 O -0.307 6.307 18 C 0.047 3.953 19 C -0.117 4.117 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.119 4.119 23 C 0.061 3.939 24 O -0.283 6.283 25 H 0.099 0.901 26 H 0.033 0.967 27 H 0.018 0.982 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.270 0.730 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 9.027 3.381 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 N -0.148 5.148 4 C -0.474 4.474 5 H 0.121 0.879 6 C -0.167 4.167 7 N -0.491 5.491 8 Si 0.750 3.250 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.192 1.192 12 C 0.243 3.757 13 O -0.472 6.472 14 C -0.005 4.005 15 H 0.119 0.881 16 C -0.045 4.045 17 O -0.221 6.221 18 C 0.002 3.998 19 C -0.136 4.136 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.137 4.137 23 C 0.015 3.985 24 O -0.196 6.196 25 H 0.117 0.883 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.453 8.481 3.672 10.258 hybrid contribution 0.059 0.202 -1.024 1.046 sum 4.512 8.683 2.648 10.137 Atomic orbital electron populations 1.22219 0.96484 0.99140 1.02346 1.21398 0.94690 0.81863 1.00712 1.43787 1.54549 1.12247 1.04177 1.19847 1.41456 1.02500 0.83606 0.87924 1.25270 0.94936 0.96551 0.99903 1.70192 1.29834 1.21295 1.27763 0.85958 0.78690 0.79483 0.80889 1.19958 1.20592 1.19226 1.18979 0.85772 0.86453 0.84542 1.90579 1.59346 1.65407 1.31846 1.22837 0.98077 0.97641 0.81991 0.88065 1.23801 0.94856 0.79722 1.06164 1.86305 1.79673 1.23568 1.32549 1.19049 0.97304 0.95038 0.88410 1.20401 1.00989 0.93645 0.98545 1.20815 0.99739 1.00145 0.93800 1.20836 0.97909 0.95347 0.99756 1.20454 1.02152 0.94635 0.96501 1.19143 0.94656 0.88213 0.96476 1.86398 1.72369 1.32019 1.28784 0.88311 0.94833 0.96243 0.87943 0.94096 0.91856 0.90572 0.83953 0.85117 0.85508 0.85451 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.62 37.15 0.36 -2.93 16 2 C 0.14 3.24 5.47 -4.05 -0.02 3.22 16 3 N -0.43 -10.46 2.63 -114.82 -0.30 -10.76 16 4 C -0.35 -8.14 8.53 -14.93 -0.13 -8.26 16 5 H 0.10 2.25 4.82 -52.49 -0.25 2.00 16 6 C 0.04 0.89 5.22 -17.47 -0.09 0.79 16 7 N -0.85 -20.07 7.38 55.50 0.41 -19.66 16 8 Si 0.92 18.06 29.58 -169.99 -5.03 13.03 16 9 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 10 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 11 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 12 C 0.46 11.23 7.01 -10.98 -0.08 11.15 16 13 O -0.59 -16.17 16.06 -13.88 -0.22 -16.39 16 14 C 0.05 1.16 2.56 -27.64 -0.07 1.09 16 15 H 0.10 2.13 7.50 -51.93 -0.39 1.75 16 16 C 0.03 0.56 6.19 37.40 0.23 0.80 16 17 O -0.31 -5.58 10.42 -32.85 -0.34 -5.93 16 18 C 0.05 0.82 6.49 -39.13 -0.25 0.57 16 19 C -0.12 -1.65 9.96 -39.42 -0.39 -2.04 16 20 C -0.13 -1.51 10.04 -39.59 -0.40 -1.91 16 21 C -0.12 -1.48 10.04 -39.59 -0.40 -1.88 16 22 C -0.12 -1.81 9.96 -39.42 -0.39 -2.21 16 23 C 0.06 1.13 6.49 -39.14 -0.25 0.88 16 24 O -0.28 -6.11 9.64 -46.88 -0.45 -6.56 16 25 H 0.10 2.39 5.75 -51.93 -0.30 2.09 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 2.49 5.97 -51.93 -0.31 2.18 16 29 H 0.04 0.99 7.25 -51.93 -0.38 0.61 16 30 H 0.27 6.03 8.31 -40.82 -0.34 5.70 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.14 2.58 5.88 -51.93 -0.31 2.27 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 296.74 15.07 4.47 4.47 Total: -1.00 -28.14 296.74 -7.38 -35.52 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.03 Total: 7.02 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.89 Total: -0.73 kcal Atomic # 7 Polarization: -30.53 SS G_CDS: 0.11 Total: -30.42 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.02 Total: -28.88 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.14 -7.38 -35.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.420 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds