Wall clock time and date at job start Mon Mar 30 2020 01:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47388 * 2 1 4 4 C 1.37096 * 119.99907 * 274.13660 * 3 2 1 5 5 H 1.07999 * 119.99437 * 185.21363 * 4 3 2 6 6 C 1.38948 * 120.00014 * 5.21953 * 4 3 2 7 7 N 1.31410 * 120.00155 * 14.19089 * 6 4 3 8 8 Si 1.86803 * 119.99912 * 194.19349 * 6 4 3 9 9 H 1.48495 * 109.47194 * 89.99645 * 8 6 4 10 10 H 1.48493 * 109.47316 * 209.99902 * 8 6 4 11 11 H 1.48505 * 109.47125 * 329.99776 * 8 6 4 12 12 C 1.34776 * 120.00051 * 94.13708 * 3 2 1 13 13 O 1.21292 * 120.00049 * 4.77397 * 12 3 2 14 14 C 1.50703 * 120.00186 * 184.77789 * 12 3 2 15 15 H 1.08997 * 109.74221 * 47.03686 * 14 12 3 16 16 C 1.53472 * 109.70811 * 286.43021 * 14 12 3 17 17 O 1.43169 * 108.25536 * 180.59343 * 16 14 12 18 18 C 1.36100 * 116.71701 * 46.17277 * 17 16 14 19 19 C 1.38708 * 119.40292 * 162.97514 * 18 17 16 20 20 C 1.38194 * 120.06604 * 179.64259 * 19 18 17 21 21 C 1.38249 * 120.11841 * 0.26759 * 20 19 18 22 22 C 1.38200 * 120.10920 * 359.54629 * 21 20 19 23 23 C 1.38704 * 120.06556 * 0.49720 * 22 21 20 24 24 O 1.36099 * 119.39385 * 179.57916 * 23 22 21 25 25 H 1.09003 * 109.46930 * 64.13309 * 1 2 3 26 26 H 1.09001 * 109.47325 * 184.12948 * 1 2 3 27 27 H 1.08995 * 109.47566 * 304.13412 * 1 2 3 28 28 H 1.09002 * 109.47273 * 239.99866 * 2 1 3 29 29 H 1.09000 * 109.47324 * 119.99934 * 2 1 3 30 30 H 0.96997 * 119.99686 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.70794 * 300.27902 * 16 14 12 32 32 H 1.09001 * 109.70921 * 60.85818 * 16 14 12 33 33 H 1.08002 * 119.96536 * 359.66145 * 19 18 17 34 34 H 1.08004 * 119.93869 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.94595 * 179.77696 * 21 20 19 36 36 H 1.08002 * 119.96820 * 180.23867 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1661 2.0560 -1.1842 5 1 2.6048 3.0428 -1.1922 6 6 1.7513 1.4703 -2.3740 7 7 0.9746 0.4106 -2.3490 8 14 2.2978 2.1893 -4.0092 9 1 3.5720 1.5525 -4.4289 10 1 1.2554 1.9341 -5.0354 11 1 2.5007 3.6532 -3.8632 12 6 2.3224 1.9885 1.1641 13 8 2.2748 1.3654 2.2037 14 6 2.7214 3.4417 1.1743 15 1 2.0242 4.0191 0.5673 16 6 4.1425 3.5921 0.6146 17 8 4.4945 4.9793 0.6513 18 6 4.2210 5.6497 1.8038 19 6 4.8391 6.8676 2.0462 20 6 4.5658 7.5634 3.2085 21 6 3.6803 7.0454 4.1353 22 6 3.0582 5.8343 3.8981 23 6 3.3286 5.1304 2.7340 24 8 2.7148 3.9349 2.5184 25 1 -0.3633 0.4484 -0.9247 26 1 -0.3634 -1.0250 0.0740 27 1 -0.3634 0.5766 0.8506 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.6854 0.0016 -3.1796 31 1 4.8406 3.0195 1.2253 32 1 4.1726 3.2317 -0.4137 33 1 5.5343 7.2726 1.3258 34 1 5.0485 8.5113 3.3954 35 1 3.4715 7.5898 5.0443 36 1 2.3639 5.4336 4.6219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:37 Heat of formation + Delta-G solvation = -71.258518 kcal Electronic energy + Delta-G solvation = -21977.113083 eV Core-core repulsion = 18620.571646 eV Total energy + Delta-G solvation = -3356.541437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.43762 -40.53371 -38.52646 -38.31942 -37.06994 -33.65419 -32.99248 -31.60742 -31.20695 -29.40668 -27.07165 -26.17066 -24.16416 -23.67879 -22.09115 -21.17696 -19.93624 -19.27414 -18.79433 -17.64078 -17.46098 -16.57258 -16.48508 -16.20373 -15.85357 -15.68303 -15.47865 -15.17177 -14.85505 -14.67596 -14.55893 -14.27531 -13.68725 -13.21402 -13.05539 -12.87646 -12.84487 -12.60064 -12.38413 -12.24886 -12.06833 -12.01597 -11.74948 -11.54007 -10.91102 -10.47133 -9.86510 -9.63614 -9.08039 -8.27487 -5.98465 0.31683 0.33132 1.33150 1.49834 1.59170 1.65503 1.89428 2.08201 2.29837 2.75003 2.95176 3.00286 3.25746 3.63480 3.70280 3.88813 4.14855 4.19166 4.29609 4.40593 4.45691 4.56334 4.58791 4.80029 4.88644 4.92680 5.07925 5.21962 5.23528 5.28681 5.41970 5.51230 5.67913 5.74842 5.87133 5.90217 6.34894 6.42159 6.99975 7.38638 7.79321 8.61151 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.005797 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.683260 B = 4829.080095 C = 5784.666186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.134 3.866 3 N -0.430 5.430 4 C -0.368 4.368 5 H 0.115 0.885 6 C 0.004 3.996 7 N -0.869 5.869 8 Si 0.991 3.009 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.262 1.262 12 C 0.440 3.560 13 O -0.629 6.629 14 C 0.064 3.936 15 H 0.097 0.903 16 C 0.043 3.957 17 O -0.310 6.310 18 C 0.018 3.982 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.106 4.106 22 C -0.130 4.130 23 C 0.019 3.981 24 O -0.313 6.313 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.004 0.996 28 H 0.100 0.900 29 H 0.030 0.970 30 H 0.275 0.725 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 11.712 2.948 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 N -0.147 5.147 4 C -0.495 4.495 5 H 0.132 0.868 6 C -0.199 4.199 7 N -0.507 5.507 8 Si 0.814 3.186 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.186 1.186 12 C 0.228 3.772 13 O -0.518 6.518 14 C 0.004 3.996 15 H 0.114 0.886 16 C -0.033 4.033 17 O -0.225 6.225 18 C -0.027 4.027 19 C -0.136 4.136 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.149 4.149 23 C -0.026 4.026 24 O -0.228 6.228 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.118 0.882 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.537 11.181 3.233 12.889 hybrid contribution -0.294 -0.548 -0.817 1.027 sum 5.244 10.634 2.416 12.100 Atomic orbital electron populations 1.22071 0.95596 1.00192 1.00978 1.21397 0.95385 0.82087 0.99911 1.44002 1.53656 1.12340 1.04746 1.20230 1.42441 1.03307 0.83475 0.86766 1.26088 0.94404 0.96803 1.02624 1.70253 1.29704 1.21850 1.28868 0.84939 0.78101 0.78981 0.76540 1.19549 1.20541 1.18626 1.19506 0.85934 0.87814 0.83972 1.90523 1.61439 1.66721 1.33120 1.22548 0.99351 0.95089 0.82607 0.88592 1.23591 0.93144 0.80596 1.05933 1.86270 1.79849 1.22831 1.33514 1.19462 0.98567 0.96428 0.88247 1.20832 1.00616 0.92258 0.99848 1.21388 0.98222 1.01003 0.92054 1.21342 0.96264 0.93758 1.01035 1.20775 1.02774 0.95753 0.95597 1.19612 0.96438 0.88052 0.98527 1.86325 1.73734 1.34164 1.28549 0.89303 0.92594 0.97713 0.88199 0.95176 0.91383 0.91128 0.83453 0.82943 0.80965 0.81409 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 9.62 71.98 0.69 -5.39 16 2 C 0.13 6.64 5.47 86.38 0.47 7.11 16 3 N -0.43 -21.68 2.63 -635.55 -1.67 -23.36 16 4 C -0.37 -17.44 8.53 84.04 0.72 -16.72 16 5 H 0.11 5.04 4.82 -2.91 -0.01 5.02 16 6 C 0.00 0.20 5.22 84.93 0.44 0.65 16 7 N -0.87 -40.71 7.38 21.66 0.16 -40.55 16 8 Si 0.99 36.17 29.58 68.60 2.03 38.20 16 9 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 10 H -0.28 -10.17 7.11 99.48 0.71 -9.46 16 11 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 12 C 0.44 22.71 7.01 87.66 0.61 23.32 16 13 O -0.63 -36.64 16.06 15.51 0.25 -36.39 16 14 C 0.06 2.86 2.56 30.01 0.08 2.93 16 15 H 0.10 4.25 7.50 -2.39 -0.02 4.24 16 16 C 0.04 1.67 6.19 72.14 0.45 2.12 16 17 O -0.31 -11.30 10.42 -82.46 -0.86 -12.15 16 18 C 0.02 0.60 6.49 22.56 0.15 0.75 16 19 C -0.12 -2.96 9.96 22.37 0.22 -2.73 16 20 C -0.11 -2.09 10.04 22.26 0.22 -1.87 16 21 C -0.11 -2.21 10.04 22.26 0.22 -1.98 16 22 C -0.13 -3.86 9.96 22.37 0.22 -3.64 16 23 C 0.02 0.69 6.49 22.56 0.15 0.84 16 24 O -0.31 -14.24 9.64 -69.03 -0.67 -14.91 16 25 H 0.09 4.35 5.75 -2.39 -0.01 4.33 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.10 4.96 5.97 -2.39 -0.01 4.95 16 29 H 0.03 1.52 7.25 -2.39 -0.02 1.50 16 30 H 0.28 12.10 8.31 -92.71 -0.77 11.33 16 31 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.15 5.43 5.88 -2.39 -0.01 5.41 16 33 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -63.06 296.74 5.00 -58.07 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 1.11 Total: 25.70 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.65 Total: 5.38 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -1.51 Total: -63.91 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -1.28 Total: -63.45 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -63.06 5.00 -58.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.192 kcal (2) G-P(sol) polarization free energy of solvation -63.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds