Wall clock time and date at job start Mon Mar 30 2020 01:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47059 * 2 1 4 4 C 1.37097 * 119.99528 * 273.79835 * 3 2 1 5 5 H 1.08003 * 119.99876 * 186.74399 * 4 3 2 6 6 C 1.38946 * 120.00132 * 6.74908 * 4 3 2 7 7 N 1.31407 * 120.00704 * 14.74756 * 6 4 3 8 8 Si 1.86804 * 119.99881 * 194.75057 * 6 4 3 9 9 H 1.48506 * 109.47266 * 59.99713 * 8 6 4 10 10 H 1.48496 * 109.47432 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46928 * 299.99975 * 8 6 4 12 12 C 1.34776 * 120.00121 * 93.79760 * 3 2 1 13 13 O 1.21285 * 119.99767 * 185.76590 * 12 3 2 14 14 C 1.50698 * 120.00013 * 5.76210 * 12 3 2 15 15 H 1.08996 * 109.74657 * 316.07321 * 14 12 3 16 16 C 1.53479 * 109.70706 * 76.68106 * 14 12 3 17 17 O 1.43173 * 108.25463 * 179.40776 * 16 14 12 18 18 C 1.36100 * 116.71558 * 313.82146 * 17 16 14 19 19 C 1.38704 * 119.40539 * 197.03100 * 18 17 16 20 20 C 1.38190 * 120.07123 * 180.36510 * 19 18 17 21 21 C 1.38252 * 120.11472 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.11195 * 359.94457 * 21 20 19 23 23 C 1.38704 * 120.06502 * 0.02562 * 22 21 20 24 24 O 1.36108 * 119.39413 * 180.16190 * 23 22 21 25 25 H 1.08997 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47410 * 300.00481 * 1 2 3 27 27 H 1.09001 * 109.47175 * 60.00085 * 1 2 3 28 28 H 1.09002 * 109.47355 * 240.00069 * 2 1 3 29 29 H 1.09004 * 109.46771 * 119.99268 * 2 1 3 30 30 H 0.96994 * 120.00574 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.70613 * 299.09394 * 16 14 12 32 32 H 1.08999 * 109.70781 * 59.67196 * 16 14 12 33 33 H 1.07997 * 119.96496 * 0.37769 * 19 18 17 34 34 H 1.07998 * 119.94428 * 179.70673 * 20 19 18 35 35 H 1.08001 * 119.94536 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.97264 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1726 2.0537 -1.1847 5 1 2.6339 3.0302 -1.1953 6 6 1.7355 1.4789 -2.3718 7 7 0.9261 0.4441 -2.3420 8 14 2.2985 2.1772 -4.0104 9 1 3.7790 2.1010 -4.0987 10 1 1.6960 1.3911 -5.1168 11 1 1.8686 3.5946 -4.1184 12 6 2.3158 1.9909 1.1646 13 8 2.6195 3.1651 1.1742 14 6 2.2711 1.2136 2.4549 15 1 1.3747 0.5941 2.4807 16 6 3.5176 0.3252 2.5673 17 8 3.4503 -0.3870 3.8075 18 6 3.1181 0.3365 4.9114 19 6 3.3753 -0.1853 6.1705 20 6 3.0368 0.5343 7.3006 21 6 2.4414 1.7762 7.1797 22 6 2.1838 2.3027 5.9282 23 6 2.5217 1.5859 4.7898 24 8 2.2649 2.1189 3.5641 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 0.6213 0.0427 -3.1707 31 1 3.5409 -0.3820 1.7382 32 1 4.4139 0.9452 2.5469 33 1 3.8409 -1.1549 6.2678 34 1 3.2336 0.1240 8.2801 35 1 2.1775 2.3360 8.0648 36 1 1.7190 3.2732 5.8364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:39 Heat of formation + Delta-G solvation = -53.584038 kcal Electronic energy + Delta-G solvation = -21927.939945 eV Core-core repulsion = 18572.164931 eV Total energy + Delta-G solvation = -3355.775014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.14822 -38.79337 -37.35090 -36.94037 -35.20382 -32.16823 -30.83378 -30.54381 -29.54955 -28.38218 -25.51770 -24.40849 -22.70608 -22.29155 -21.12752 -19.42753 -18.40535 -17.55742 -16.98777 -16.58042 -15.98137 -15.20666 -15.05204 -14.64515 -14.37257 -14.18186 -13.99079 -13.73598 -13.49699 -13.45435 -12.93174 -12.54971 -12.04493 -11.91818 -11.74458 -11.37286 -11.18379 -11.11823 -10.89778 -10.77155 -10.43904 -10.27912 -10.22594 -10.01844 -9.00965 -8.56523 -8.54021 -7.92885 -7.89183 -6.37188 -3.96386 1.36492 1.40954 3.00314 3.14574 3.18307 3.21297 3.33139 3.61586 3.80369 4.05165 4.45509 4.68675 4.82660 4.97852 5.00859 5.12697 5.27458 5.31668 5.36536 5.50963 5.60503 5.71917 5.93957 6.04745 6.19496 6.30958 6.50012 6.50875 6.61288 6.70623 6.74560 7.09443 7.19895 7.38905 7.59371 7.78147 7.91177 8.36412 9.01713 9.22745 9.75082 10.52345 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037374 B = 0.004631 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.010220 B = 6044.225376 C = 6279.679989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.117 3.883 3 N -0.431 5.431 4 C -0.298 4.298 5 H 0.106 0.894 6 C 0.026 3.974 7 N -0.871 5.871 8 Si 0.933 3.067 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.445 3.555 13 O -0.568 6.568 14 C 0.047 3.953 15 H 0.096 0.904 16 C 0.034 3.966 17 O -0.307 6.307 18 C 0.046 3.954 19 C -0.116 4.116 20 C -0.126 4.126 21 C -0.118 4.118 22 C -0.118 4.118 23 C 0.061 3.939 24 O -0.278 6.278 25 H 0.037 0.963 26 H 0.014 0.986 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.030 0.970 30 H 0.268 0.732 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -4.783 11.886 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.006 4.006 3 N -0.151 5.151 4 C -0.426 4.426 5 H 0.124 0.876 6 C -0.176 4.176 7 N -0.512 5.512 8 Si 0.759 3.241 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.231 3.769 13 O -0.451 6.451 14 C -0.014 4.014 15 H 0.114 0.886 16 C -0.042 4.042 17 O -0.221 6.221 18 C 0.001 3.999 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.136 4.136 23 C 0.015 3.985 24 O -0.191 6.191 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.982 -4.330 11.628 12.566 hybrid contribution 0.044 0.072 -0.943 0.947 sum 2.026 -4.259 10.685 11.680 Atomic orbital electron populations 1.22328 0.95983 1.00017 1.02384 1.21693 0.95492 0.82970 1.00403 1.43773 1.54978 1.11987 1.04359 1.19792 1.37099 1.03584 0.82083 0.87589 1.25294 0.95480 0.96911 0.99868 1.70137 1.29893 1.23402 1.27795 0.85883 0.79076 0.78923 0.80192 1.19862 1.20827 1.19795 1.18917 0.87241 0.87617 0.83112 1.90562 1.53482 1.15542 1.85525 1.22989 0.99271 0.91595 0.87514 0.88625 1.23702 0.98046 0.97169 0.85306 1.86286 1.85371 1.35852 1.14609 1.19014 1.00293 0.92414 0.88226 1.20398 1.02722 1.01267 0.89047 1.20832 1.00777 0.95080 0.97741 1.20860 1.00328 0.96087 0.96380 1.20470 1.02420 1.01065 0.89666 1.19160 0.99110 0.93543 0.86730 1.86431 1.85945 1.34733 1.12002 0.94411 0.96666 0.87364 0.87450 0.95220 0.92070 0.85303 0.89983 0.85053 0.85404 0.85336 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.53 37.16 0.35 -2.77 16 2 C 0.12 2.51 4.95 -4.04 -0.02 2.49 16 3 N -0.43 -10.61 2.63 -114.81 -0.30 -10.91 16 4 C -0.30 -7.91 9.50 -14.94 -0.14 -8.05 16 5 H 0.11 2.97 7.25 -52.48 -0.38 2.59 16 6 C 0.03 0.65 5.19 -17.47 -0.09 0.56 16 7 N -0.87 -20.97 7.40 55.50 0.41 -20.56 16 8 Si 0.93 19.68 29.58 -169.99 -5.03 14.65 16 9 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 C 0.45 10.98 6.92 -10.99 -0.08 10.91 16 13 O -0.57 -16.22 16.20 -13.69 -0.22 -16.44 16 14 C 0.05 0.95 2.55 -27.64 -0.07 0.88 16 15 H 0.10 1.86 6.98 -51.93 -0.36 1.50 16 16 C 0.03 0.59 6.25 37.41 0.23 0.82 16 17 O -0.31 -5.20 10.42 -32.85 -0.34 -5.54 16 18 C 0.05 0.75 6.49 -39.14 -0.25 0.50 16 19 C -0.12 -1.53 9.96 -39.43 -0.39 -1.93 16 20 C -0.13 -1.42 10.04 -39.59 -0.40 -1.82 16 21 C -0.12 -1.39 10.04 -39.59 -0.40 -1.78 16 22 C -0.12 -1.73 9.96 -39.43 -0.39 -2.12 16 23 C 0.06 1.08 6.49 -39.14 -0.25 0.82 16 24 O -0.28 -5.87 9.66 -46.82 -0.45 -6.32 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.01 0.30 7.98 -51.93 -0.41 -0.12 16 27 H 0.11 2.57 5.74 -51.93 -0.30 2.28 16 28 H 0.11 2.43 6.09 -51.93 -0.32 2.11 16 29 H 0.03 0.55 4.70 -51.93 -0.24 0.30 16 30 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 31 H 0.13 2.05 6.55 -51.93 -0.34 1.71 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -29.74 297.19 -7.38 -37.12 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.03 Total: 5.00 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.90 Total: -1.49 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.11 Total: -31.47 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.02 Total: -28.30 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.74 -7.38 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.459 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds