Wall clock time and date at job start Mon Mar 30 2020 01:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47059 * 2 1 4 4 C 1.37097 * 119.99528 * 273.79835 * 3 2 1 5 5 H 1.08003 * 119.99876 * 186.74399 * 4 3 2 6 6 C 1.38946 * 120.00132 * 6.74908 * 4 3 2 7 7 N 1.31407 * 120.00704 * 14.74756 * 6 4 3 8 8 Si 1.86804 * 119.99881 * 194.75057 * 6 4 3 9 9 H 1.48506 * 109.47266 * 59.99713 * 8 6 4 10 10 H 1.48496 * 109.47432 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46928 * 299.99975 * 8 6 4 12 12 C 1.34776 * 120.00121 * 93.79760 * 3 2 1 13 13 O 1.21285 * 119.99767 * 185.76590 * 12 3 2 14 14 C 1.50698 * 120.00013 * 5.76210 * 12 3 2 15 15 H 1.08996 * 109.74657 * 316.07321 * 14 12 3 16 16 C 1.53479 * 109.70706 * 76.68106 * 14 12 3 17 17 O 1.43173 * 108.25463 * 179.40776 * 16 14 12 18 18 C 1.36100 * 116.71558 * 313.82146 * 17 16 14 19 19 C 1.38704 * 119.40539 * 197.03100 * 18 17 16 20 20 C 1.38190 * 120.07123 * 180.36510 * 19 18 17 21 21 C 1.38252 * 120.11472 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.11195 * 359.94457 * 21 20 19 23 23 C 1.38704 * 120.06502 * 0.02562 * 22 21 20 24 24 O 1.36108 * 119.39413 * 180.16190 * 23 22 21 25 25 H 1.08997 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47410 * 300.00481 * 1 2 3 27 27 H 1.09001 * 109.47175 * 60.00085 * 1 2 3 28 28 H 1.09002 * 109.47355 * 240.00069 * 2 1 3 29 29 H 1.09004 * 109.46771 * 119.99268 * 2 1 3 30 30 H 0.96994 * 120.00574 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.70613 * 299.09394 * 16 14 12 32 32 H 1.08999 * 109.70781 * 59.67196 * 16 14 12 33 33 H 1.07997 * 119.96496 * 0.37769 * 19 18 17 34 34 H 1.07998 * 119.94428 * 179.70673 * 20 19 18 35 35 H 1.08001 * 119.94536 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.97264 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1726 2.0537 -1.1847 5 1 2.6339 3.0302 -1.1953 6 6 1.7355 1.4789 -2.3718 7 7 0.9261 0.4441 -2.3420 8 14 2.2985 2.1772 -4.0104 9 1 3.7790 2.1010 -4.0987 10 1 1.6960 1.3911 -5.1168 11 1 1.8686 3.5946 -4.1184 12 6 2.3158 1.9909 1.1646 13 8 2.6195 3.1651 1.1742 14 6 2.2711 1.2136 2.4549 15 1 1.3747 0.5941 2.4807 16 6 3.5176 0.3252 2.5673 17 8 3.4503 -0.3870 3.8075 18 6 3.1181 0.3365 4.9114 19 6 3.3753 -0.1853 6.1705 20 6 3.0368 0.5343 7.3006 21 6 2.4414 1.7762 7.1797 22 6 2.1838 2.3027 5.9282 23 6 2.5217 1.5859 4.7898 24 8 2.2649 2.1189 3.5641 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 0.6213 0.0427 -3.1707 31 1 3.5409 -0.3820 1.7382 32 1 4.4139 0.9452 2.5469 33 1 3.8409 -1.1549 6.2678 34 1 3.2336 0.1240 8.2801 35 1 2.1775 2.3360 8.0648 36 1 1.7190 3.2732 5.8364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:39 Heat of formation + Delta-G solvation = -70.891274 kcal Electronic energy + Delta-G solvation = -21928.690443 eV Core-core repulsion = 18572.164931 eV Total energy + Delta-G solvation = -3356.525513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.49041 -40.51961 -38.54022 -38.35348 -37.13223 -34.02813 -32.30535 -31.62774 -31.33657 -29.67159 -27.22509 -25.97840 -24.04929 -23.79860 -22.50488 -21.02813 -19.75290 -19.12880 -18.73762 -18.02444 -17.48222 -16.71356 -16.57415 -16.06343 -15.89395 -15.63792 -15.39724 -15.20237 -14.94284 -14.82619 -14.73607 -14.11571 -13.75750 -13.23754 -13.04488 -12.90582 -12.80657 -12.65307 -12.33430 -12.23874 -12.13223 -12.07697 -11.78780 -11.59170 -10.89338 -10.47580 -9.82803 -9.65442 -9.10826 -8.28253 -5.96635 0.30255 0.31130 1.30465 1.43211 1.51683 1.62544 1.89006 2.02603 2.32123 2.73637 2.89582 3.01706 3.17561 3.57507 3.62478 3.62640 4.02299 4.13635 4.19565 4.29634 4.41524 4.45452 4.56617 4.78436 4.85720 4.88002 5.09360 5.20696 5.22043 5.35117 5.44792 5.50513 5.72146 5.79411 5.96509 5.98918 6.33669 6.46092 7.07087 7.30350 7.83842 8.58549 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037374 B = 0.004631 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.010220 B = 6044.225376 C = 6279.679989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.117 3.883 3 N -0.433 5.433 4 C -0.344 4.344 5 H 0.076 0.924 6 C 0.005 3.995 7 N -0.867 5.867 8 Si 0.993 3.007 9 H -0.271 1.271 10 H -0.265 1.265 11 H -0.280 1.280 12 C 0.430 3.570 13 O -0.623 6.623 14 C 0.058 3.942 15 H 0.103 0.897 16 C 0.044 3.956 17 O -0.306 6.306 18 C 0.018 3.982 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.105 4.105 22 C -0.131 4.131 23 C 0.019 3.981 24 O -0.313 6.313 25 H 0.066 0.934 26 H 0.013 0.987 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.277 0.723 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -6.814 13.677 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.004 4.004 3 N -0.151 5.151 4 C -0.472 4.472 5 H 0.094 0.906 6 C -0.197 4.197 7 N -0.505 5.505 8 Si 0.816 3.184 9 H -0.197 1.197 10 H -0.190 1.190 11 H -0.206 1.206 12 C 0.218 3.782 13 O -0.511 6.511 14 C -0.002 4.002 15 H 0.120 0.880 16 C -0.032 4.032 17 O -0.220 6.220 18 C -0.026 4.026 19 C -0.133 4.133 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.150 4.150 23 C -0.026 4.026 24 O -0.227 6.227 25 H 0.085 0.915 26 H 0.032 0.968 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.992 -6.423 13.434 15.023 hybrid contribution -0.021 0.682 -1.370 1.530 sum 1.971 -5.742 12.064 13.505 Atomic orbital electron populations 1.22187 0.95512 1.01381 1.00863 1.21792 0.95820 0.81416 1.01419 1.43970 1.54167 1.12954 1.04020 1.19692 1.39848 1.03726 0.83890 0.90612 1.25947 0.94725 0.97095 1.01953 1.70226 1.28437 1.22909 1.28973 0.85013 0.78685 0.77983 0.76711 1.19656 1.18966 1.20584 1.19625 0.86625 0.87425 0.84516 1.90501 1.55968 1.17988 1.86618 1.22705 1.00869 0.91013 0.85624 0.87996 1.23551 0.96190 0.96924 0.86503 1.86268 1.85700 1.35627 1.14441 1.19410 1.01633 0.92484 0.89107 1.20836 1.02028 1.02306 0.88139 1.21400 0.98098 0.94179 0.98964 1.21346 0.98459 0.96390 0.96125 1.20776 1.02773 1.01220 0.90231 1.19607 1.01838 0.95174 0.85983 1.86354 1.87057 1.35923 1.13394 0.91507 0.96819 0.90131 0.88465 0.92073 0.91279 0.83733 0.90976 0.82717 0.80929 0.81482 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 9.53 71.98 0.69 -5.18 16 2 C 0.12 5.02 4.95 86.38 0.43 5.45 16 3 N -0.43 -22.11 2.63 -635.53 -1.67 -23.78 16 4 C -0.34 -19.05 9.50 84.04 0.80 -18.25 16 5 H 0.08 4.56 7.25 -2.91 -0.02 4.54 16 6 C 0.01 0.27 5.19 84.93 0.44 0.71 16 7 N -0.87 -41.31 7.40 21.66 0.16 -41.15 16 8 Si 0.99 40.44 29.58 68.60 2.03 42.47 16 9 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 12 C 0.43 22.40 6.92 87.66 0.61 23.00 16 13 O -0.62 -38.17 16.20 15.35 0.25 -37.93 16 14 C 0.06 2.46 2.55 30.01 0.08 2.54 16 15 H 0.10 4.06 6.98 -2.39 -0.02 4.04 16 16 C 0.04 1.58 6.25 72.14 0.45 2.03 16 17 O -0.31 -10.18 10.42 -82.46 -0.86 -11.04 16 18 C 0.02 0.59 6.49 22.56 0.15 0.73 16 19 C -0.11 -2.68 9.96 22.37 0.22 -2.46 16 20 C -0.11 -1.94 10.04 22.26 0.22 -1.72 16 21 C -0.11 -2.09 10.04 22.26 0.22 -1.86 16 22 C -0.13 -3.77 9.96 22.37 0.22 -3.55 16 23 C 0.02 0.67 6.49 22.56 0.15 0.82 16 24 O -0.31 -13.88 9.66 -69.22 -0.67 -14.55 16 25 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.01 0.53 7.98 -2.39 -0.02 0.52 16 27 H 0.08 3.83 5.74 -2.39 -0.01 3.82 16 28 H 0.10 4.36 6.09 -2.39 -0.01 4.34 16 29 H 0.06 2.21 4.70 -2.39 -0.01 2.20 16 30 H 0.28 12.30 8.31 -92.71 -0.77 11.53 16 31 H 0.15 4.55 6.55 -2.39 -0.02 4.53 16 32 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -68.77 297.19 5.02 -63.75 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 1.11 Total: 19.94 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.67 Total: 2.28 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -1.51 Total: -64.93 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -1.28 Total: -63.51 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -68.77 5.02 -63.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.144 kcal (2) G-P(sol) polarization free energy of solvation -68.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds