Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47531 * 2 1 4 4 C 1.36904 * 120.00107 * 80.43988 * 3 2 1 5 5 H 1.07993 * 120.00460 * 171.47023 * 4 3 2 6 6 C 1.39027 * 119.99733 * 351.46392 * 4 3 2 7 7 N 1.31382 * 120.00032 * 22.69685 * 6 4 3 8 8 Si 1.86795 * 119.99957 * 202.68859 * 6 4 3 9 9 H 1.48494 * 109.47043 * 90.00569 * 8 6 4 10 10 H 1.48506 * 109.47234 * 210.00578 * 8 6 4 11 11 H 1.48501 * 109.47351 * 330.00265 * 8 6 4 12 12 C 1.34776 * 120.00089 * 260.44183 * 3 2 1 13 13 O 1.21623 * 120.00173 * 180.87751 * 12 3 2 14 14 C 1.47499 * 119.99896 * 0.87317 * 12 3 2 15 15 C 1.39767 * 120.10262 * 37.94952 * 14 12 3 16 16 C 1.37711 * 119.96294 * 180.09176 * 15 14 12 17 17 C 1.39026 * 120.27245 * 359.94855 * 16 15 14 18 18 C 1.39283 * 120.05623 * 359.94950 * 17 16 15 19 19 C 1.38276 * 119.96537 * 0.12652 * 18 17 16 20 20 O 1.36143 * 120.75892 * 180.39566 * 18 17 16 21 21 C 1.43164 * 116.68384 * 342.61472 * 20 18 17 22 22 C 1.53462 * 108.22756 * 46.27566 * 21 20 18 23 23 O 1.35969 * 119.23574 * 179.80239 * 17 16 15 24 24 H 1.08993 * 109.47092 * 281.17963 * 1 2 3 25 25 H 1.08997 * 109.46714 * 41.17487 * 1 2 3 26 26 H 1.08993 * 109.47391 * 161.17625 * 1 2 3 27 27 H 1.09004 * 109.46946 * 239.99831 * 2 1 3 28 28 H 1.09007 * 109.46801 * 120.00106 * 2 1 3 29 29 H 0.97000 * 120.00341 * 179.97438 * 7 6 4 30 30 H 1.08004 * 120.02599 * 0.11396 * 15 14 12 31 31 H 1.08000 * 119.86395 * 179.97438 * 16 15 14 32 32 H 1.07994 * 120.02053 * 180.16599 * 19 18 17 33 33 H 1.09003 * 109.71468 * 286.58964 * 21 20 18 34 34 H 1.09003 * 109.71363 * 165.95503 * 21 20 18 35 35 H 1.09004 * 109.70701 * 180.51075 * 22 21 20 36 36 H 1.08996 * 109.74245 * 59.91883 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0610 2.0922 1.1691 5 1 2.5462 3.0566 1.1974 6 6 1.4795 1.5727 2.3202 7 7 1.2932 0.2773 2.4349 8 14 0.9631 2.7167 3.7036 9 1 -0.4407 3.1506 3.4892 10 1 1.0678 2.0026 5.0015 11 1 1.8519 3.9063 3.7202 12 6 2.4258 1.9519 -1.1510 13 8 2.8463 3.0931 -1.1484 14 6 2.3619 1.1924 -2.4138 15 6 1.2859 0.3358 -2.6629 16 6 1.2301 -0.3734 -3.8420 17 6 2.2399 -0.2405 -4.7883 18 6 3.3138 0.6130 -4.5473 19 6 3.3769 1.3268 -3.3647 20 8 4.3064 0.7601 -5.4674 21 6 4.4021 -0.2504 -6.4770 22 6 2.9936 -0.5154 -7.0258 23 8 2.1655 -0.9538 -5.9435 24 1 -0.3633 0.1992 1.0081 25 1 -0.3633 0.7735 -0.6766 26 1 -0.3634 -0.9726 -0.3316 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 0.8878 -0.0853 3.2381 30 1 0.4985 0.2302 -1.9312 31 1 0.3981 -1.0352 -4.0327 32 1 4.2078 1.9909 -3.1780 33 1 4.8063 -1.1655 -6.0442 34 1 5.0513 0.0943 -7.2819 35 1 3.0373 -1.2896 -7.7919 36 1 2.5862 0.4011 -7.4524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049473.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = -46.500407 kcal Electronic energy + Delta-G solvation = -21783.864155 eV Core-core repulsion = 18428.396310 eV Total energy + Delta-G solvation = -3355.467845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08729 -39.09991 -37.14141 -36.68980 -35.22668 -32.09904 -30.92850 -30.39746 -29.64231 -28.28398 -25.43660 -24.53095 -22.75221 -22.09616 -21.21859 -19.50088 -18.28170 -17.46720 -17.05158 -16.80988 -15.77380 -15.17912 -15.03614 -14.78254 -14.33169 -14.21799 -14.02138 -13.62884 -13.44661 -13.30915 -12.88978 -12.73188 -12.04020 -11.79357 -11.55240 -11.24688 -11.11574 -11.03047 -10.90096 -10.80139 -10.36406 -10.31615 -10.15878 -9.80321 -9.02145 -8.53367 -8.32473 -7.81227 -7.72807 -6.28527 -3.84718 1.37732 1.64048 3.08287 3.13007 3.23614 3.26888 3.30004 3.67154 4.06906 4.21026 4.31012 4.71923 4.78374 4.80772 4.86627 5.08828 5.16109 5.35069 5.43395 5.54907 5.71597 5.76098 6.11618 6.17372 6.33855 6.41218 6.53267 6.55109 6.67242 6.85446 6.89380 7.02218 7.30019 7.42643 7.58495 7.68771 8.06008 8.50764 9.11598 9.38402 9.95212 10.54061 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038339 B = 0.004651 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.148227 B = 6018.821633 C = 6500.243581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.082 3.918 3 N -0.424 5.424 4 C -0.298 4.298 5 H 0.108 0.892 6 C 0.033 3.967 7 N -0.862 5.862 8 Si 0.925 3.075 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.472 3.528 13 O -0.592 6.592 14 C -0.086 4.086 15 C -0.108 4.108 16 C -0.122 4.122 17 C 0.046 3.954 18 C 0.038 3.962 19 C -0.073 4.073 20 O -0.308 6.308 21 C 0.021 3.979 22 C 0.021 3.979 23 O -0.309 6.309 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.139 0.861 29 H 0.268 0.732 30 H 0.158 0.842 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 -6.373 -13.452 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.041 4.041 3 N -0.140 5.140 4 C -0.426 4.426 5 H 0.125 0.875 6 C -0.170 4.170 7 N -0.502 5.502 8 Si 0.751 3.249 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.193 1.193 12 C 0.261 3.739 13 O -0.479 6.479 14 C -0.090 4.090 15 C -0.126 4.126 16 C -0.141 4.141 17 C 0.001 3.999 18 C -0.007 4.007 19 C -0.093 4.093 20 O -0.223 6.223 21 C -0.055 4.055 22 C -0.055 4.055 23 O -0.224 6.224 24 H 0.096 0.904 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.156 0.844 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.531 -5.973 -13.288 14.578 hybrid contribution -0.249 0.232 0.321 0.468 sum 0.282 -5.741 -12.967 14.184 Atomic orbital electron populations 1.22260 0.97502 0.98662 1.02876 1.22439 0.94056 0.83916 1.03711 1.43777 1.52531 1.11763 1.05949 1.19796 1.34205 1.02643 0.85964 0.87466 1.25251 0.96796 0.96031 0.98896 1.69789 1.41860 1.10407 1.28185 0.85939 0.79467 0.80295 0.79176 1.20241 1.21006 1.19266 1.17651 0.86034 0.87187 0.83009 1.90618 1.52608 1.18551 1.86107 1.19995 0.94978 0.97974 0.96023 1.22045 0.99250 0.94670 0.96658 1.20319 0.97571 1.02817 0.93350 1.19016 0.95292 0.97357 0.88196 1.18678 0.88845 1.01543 0.91590 1.20405 0.99871 0.99547 0.89452 1.86326 1.49736 1.47307 1.38912 1.23559 0.97618 0.92671 0.91653 1.23565 0.90679 1.02344 0.88892 1.86234 1.63347 1.52859 1.19981 0.90440 0.94280 0.93942 0.93707 0.84403 0.92008 0.82514 0.84925 0.84392 0.90722 0.86452 0.86482 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.16 37.16 0.30 -2.80 16 2 C 0.08 1.82 4.88 -4.04 -0.02 1.80 16 3 N -0.42 -10.86 2.64 -116.00 -0.31 -11.17 16 4 C -0.30 -8.13 9.42 -14.99 -0.14 -8.27 16 5 H 0.11 3.10 7.28 -52.49 -0.38 2.72 16 6 C 0.03 0.83 4.86 -17.45 -0.08 0.75 16 7 N -0.86 -21.12 8.21 55.50 0.46 -20.67 16 8 Si 0.92 20.07 29.61 -169.99 -5.03 15.04 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 C 0.47 12.08 7.30 -12.49 -0.09 11.99 16 13 O -0.59 -17.12 16.47 5.26 0.09 -17.03 16 14 C -0.09 -1.83 5.19 -104.99 -0.55 -2.38 16 15 C -0.11 -1.98 7.40 -39.20 -0.29 -2.27 16 16 C -0.12 -1.97 9.94 -39.48 -0.39 -2.37 16 17 C 0.05 0.76 6.51 -38.90 -0.25 0.51 16 18 C 0.04 0.66 6.48 -39.18 -0.25 0.41 16 19 C -0.07 -1.45 9.53 -39.01 -0.37 -1.82 16 20 O -0.31 -4.72 10.42 -32.94 -0.34 -5.07 16 21 C 0.02 0.21 7.26 37.40 0.27 0.49 16 22 C 0.02 0.21 7.26 37.40 0.27 0.48 16 23 O -0.31 -4.34 10.41 -32.39 -0.34 -4.68 16 24 H 0.08 1.70 6.20 -51.93 -0.32 1.38 16 25 H 0.04 0.77 6.76 -51.93 -0.35 0.42 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.92 5.10 -51.93 -0.26 0.65 16 28 H 0.14 3.34 5.45 -51.92 -0.28 3.06 16 29 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 30 H 0.16 2.84 3.18 -52.48 -0.17 2.67 16 31 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 32 H 0.14 2.78 8.03 -52.49 -0.42 2.36 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 292.34 15.07 4.41 4.41 Total: -1.00 -30.79 292.34 -6.53 -37.32 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -3.86 Total: 5.35 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.60 Total: -3.50 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.15 Total: -31.84 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.59 Total: -26.77 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.79 -6.53 -37.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049473.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.181 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds