Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47531 * 2 1 4 4 C 1.36904 * 120.00107 * 80.43988 * 3 2 1 5 5 H 1.07993 * 120.00460 * 171.47023 * 4 3 2 6 6 C 1.39027 * 119.99733 * 351.46392 * 4 3 2 7 7 N 1.31382 * 120.00032 * 22.69685 * 6 4 3 8 8 Si 1.86795 * 119.99957 * 202.68859 * 6 4 3 9 9 H 1.48494 * 109.47043 * 90.00569 * 8 6 4 10 10 H 1.48506 * 109.47234 * 210.00578 * 8 6 4 11 11 H 1.48501 * 109.47351 * 330.00265 * 8 6 4 12 12 C 1.34776 * 120.00089 * 260.44183 * 3 2 1 13 13 O 1.21623 * 120.00173 * 180.87751 * 12 3 2 14 14 C 1.47499 * 119.99896 * 0.87317 * 12 3 2 15 15 C 1.39767 * 120.10262 * 37.94952 * 14 12 3 16 16 C 1.37711 * 119.96294 * 180.09176 * 15 14 12 17 17 C 1.39026 * 120.27245 * 359.94855 * 16 15 14 18 18 C 1.39283 * 120.05623 * 359.94950 * 17 16 15 19 19 C 1.38276 * 119.96537 * 0.12652 * 18 17 16 20 20 O 1.36143 * 120.75892 * 180.39566 * 18 17 16 21 21 C 1.43164 * 116.68384 * 342.61472 * 20 18 17 22 22 C 1.53462 * 108.22756 * 46.27566 * 21 20 18 23 23 O 1.35969 * 119.23574 * 179.80239 * 17 16 15 24 24 H 1.08993 * 109.47092 * 281.17963 * 1 2 3 25 25 H 1.08997 * 109.46714 * 41.17487 * 1 2 3 26 26 H 1.08993 * 109.47391 * 161.17625 * 1 2 3 27 27 H 1.09004 * 109.46946 * 239.99831 * 2 1 3 28 28 H 1.09007 * 109.46801 * 120.00106 * 2 1 3 29 29 H 0.97000 * 120.00341 * 179.97438 * 7 6 4 30 30 H 1.08004 * 120.02599 * 0.11396 * 15 14 12 31 31 H 1.08000 * 119.86395 * 179.97438 * 16 15 14 32 32 H 1.07994 * 120.02053 * 180.16599 * 19 18 17 33 33 H 1.09003 * 109.71468 * 286.58964 * 21 20 18 34 34 H 1.09003 * 109.71363 * 165.95503 * 21 20 18 35 35 H 1.09004 * 109.70701 * 180.51075 * 22 21 20 36 36 H 1.08996 * 109.74245 * 59.91883 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0610 2.0922 1.1691 5 1 2.5462 3.0566 1.1974 6 6 1.4795 1.5727 2.3202 7 7 1.2932 0.2773 2.4349 8 14 0.9631 2.7167 3.7036 9 1 -0.4407 3.1506 3.4892 10 1 1.0678 2.0026 5.0015 11 1 1.8519 3.9063 3.7202 12 6 2.4258 1.9519 -1.1510 13 8 2.8463 3.0931 -1.1484 14 6 2.3619 1.1924 -2.4138 15 6 1.2859 0.3358 -2.6629 16 6 1.2301 -0.3734 -3.8420 17 6 2.2399 -0.2405 -4.7883 18 6 3.3138 0.6130 -4.5473 19 6 3.3769 1.3268 -3.3647 20 8 4.3064 0.7601 -5.4674 21 6 4.4021 -0.2504 -6.4770 22 6 2.9936 -0.5154 -7.0258 23 8 2.1655 -0.9538 -5.9435 24 1 -0.3633 0.1992 1.0081 25 1 -0.3633 0.7735 -0.6766 26 1 -0.3634 -0.9726 -0.3316 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 0.8878 -0.0853 3.2381 30 1 0.4985 0.2302 -1.9312 31 1 0.3981 -1.0352 -4.0327 32 1 4.2078 1.9909 -3.1780 33 1 4.8063 -1.1655 -6.0442 34 1 5.0513 0.0943 -7.2819 35 1 3.0373 -1.2896 -7.7919 36 1 2.5862 0.4011 -7.4524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049473.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = -66.288169 kcal Electronic energy + Delta-G solvation = -21784.722216 eV Core-core repulsion = 18428.396310 eV Total energy + Delta-G solvation = -3356.325907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.28411 -40.82316 -38.27194 -38.16271 -37.18721 -33.94087 -32.22359 -31.83337 -31.25087 -29.56798 -27.20326 -25.75968 -24.29120 -23.75001 -22.52915 -21.02074 -19.53770 -19.03585 -18.61329 -18.20757 -17.27271 -16.74281 -16.45333 -16.05313 -15.88854 -15.62962 -15.38723 -15.12463 -14.88555 -14.84011 -14.52402 -13.96015 -13.65760 -13.48020 -13.18871 -12.96557 -12.69627 -12.45790 -12.29521 -12.12182 -11.99958 -11.96263 -11.50235 -11.46565 -10.92861 -10.51073 -9.80700 -9.66964 -9.08728 -8.21295 -5.89159 -0.06828 0.25966 1.37107 1.44087 1.54425 1.94370 2.00293 2.21714 2.30876 2.68006 3.06696 3.13768 3.27702 3.65441 3.84783 3.98380 4.09764 4.17168 4.21212 4.37653 4.48501 4.60465 4.61297 4.76655 4.80494 4.85924 4.99787 5.04692 5.13179 5.39024 5.41407 5.49533 5.66539 5.76823 5.86948 6.10702 6.38002 6.55664 7.12934 7.43820 8.00580 8.58216 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038339 B = 0.004651 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.148227 B = 6018.821633 C = 6500.243581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 N -0.431 5.431 4 C -0.349 4.349 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.860 5.860 8 Si 0.983 3.017 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.280 1.280 12 C 0.456 3.544 13 O -0.645 6.645 14 C -0.112 4.112 15 C -0.106 4.106 16 C -0.112 4.112 17 C 0.061 3.939 18 C 0.042 3.958 19 C -0.091 4.091 20 O -0.326 6.326 21 C 0.010 3.990 22 C 0.014 3.986 23 O -0.311 6.311 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.278 0.722 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 -8.864 -15.350 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 N -0.145 5.145 4 C -0.477 4.477 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.497 5.497 8 Si 0.807 3.193 9 H -0.195 1.195 10 H -0.191 1.191 11 H -0.205 1.205 12 C 0.247 3.753 13 O -0.536 6.536 14 C -0.116 4.116 15 C -0.124 4.124 16 C -0.130 4.130 17 C 0.015 3.985 18 C -0.003 4.003 19 C -0.111 4.111 20 O -0.241 6.241 21 C -0.064 4.064 22 C -0.060 4.060 23 O -0.225 6.225 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.089 0.911 30 H 0.178 0.822 31 H 0.187 0.813 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.729 -8.534 -15.201 17.447 hybrid contribution 0.224 0.887 0.724 1.167 sum -0.505 -7.647 -14.477 16.380 Atomic orbital electron populations 1.22126 0.95544 1.00823 1.01758 1.22490 0.95607 0.82136 1.03670 1.43964 1.52272 1.12783 1.05518 1.19624 1.37569 1.02644 0.87842 0.90913 1.25857 0.95484 0.97422 1.00049 1.69867 1.40183 1.10786 1.28903 0.85098 0.78816 0.78261 0.77131 1.19535 1.19091 1.20483 1.18385 0.85339 0.87073 0.84491 1.90545 1.54898 1.20951 1.87208 1.19670 0.97338 0.99914 0.94650 1.22002 0.98182 0.94372 0.97870 1.20614 0.98299 1.02108 0.91962 1.19099 0.94272 0.96016 0.89126 1.18568 0.89786 1.00877 0.91085 1.20285 0.99465 1.00506 0.90868 1.86308 1.49056 1.49305 1.39427 1.24046 0.98923 0.92106 0.91318 1.24012 0.89427 1.04383 0.88193 1.86243 1.64176 1.52348 1.19781 0.92474 0.94399 0.90027 0.91852 0.86249 0.91078 0.82217 0.81341 0.86390 0.90040 0.82647 0.82026 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 8.16 71.98 0.59 -5.06 16 2 C 0.08 3.72 4.88 86.38 0.42 4.15 16 3 N -0.43 -23.12 2.64 -639.16 -1.69 -24.81 16 4 C -0.35 -20.10 9.42 84.09 0.79 -19.31 16 5 H 0.07 4.58 7.28 -2.91 -0.02 4.56 16 6 C 0.02 0.81 4.86 84.95 0.41 1.22 16 7 N -0.86 -41.97 8.21 21.68 0.18 -41.79 16 8 Si 0.98 41.56 29.61 68.60 2.03 43.60 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.46 24.89 7.30 86.68 0.63 25.53 16 13 O -0.65 -40.44 16.47 -4.10 -0.07 -40.51 16 14 C -0.11 -4.96 5.19 -20.11 -0.10 -5.07 16 15 C -0.11 -3.80 7.40 22.52 0.17 -3.64 16 16 C -0.11 -3.29 9.94 22.33 0.22 -3.07 16 17 C 0.06 1.82 6.51 22.71 0.15 1.97 16 18 C 0.04 1.43 6.48 22.53 0.15 1.57 16 19 C -0.09 -3.77 9.53 22.64 0.22 -3.55 16 20 O -0.33 -9.51 10.42 -82.99 -0.86 -10.38 16 21 C 0.01 0.18 7.26 72.14 0.52 0.70 16 22 C 0.01 0.22 7.26 72.14 0.52 0.74 16 23 O -0.31 -7.41 10.41 -81.01 -0.84 -8.25 16 24 H 0.06 2.45 6.20 -2.39 -0.01 2.44 16 25 H 0.04 1.47 6.76 -2.39 -0.02 1.46 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.06 2.58 5.10 -2.39 -0.01 2.57 16 28 H 0.12 5.84 5.45 -2.38 -0.01 5.82 16 29 H 0.28 12.53 8.31 -92.71 -0.77 11.76 16 30 H 0.16 5.58 3.18 -2.91 -0.01 5.57 16 31 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 32 H 0.12 5.19 8.03 -2.91 -0.02 5.17 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -71.83 292.34 4.55 -67.28 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.12 Total: 18.67 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 4.69 Total: -3.82 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -1.51 Total: -66.60 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -1.77 Total: -59.13 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.60 kcal Total: -71.83 4.55 -67.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049473.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.991 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds