Wall clock time and date at job start Mon Mar 30 2020 01:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47267 * 2 1 4 4 C 1.36914 * 120.00131 * 96.70237 * 3 2 1 5 5 H 1.07993 * 120.00089 * 160.35962 * 4 3 2 6 6 C 1.39022 * 119.99554 * 340.35809 * 4 3 2 7 7 N 1.31378 * 120.00200 * 357.61864 * 6 4 3 8 8 Si 1.86800 * 119.99759 * 177.61238 * 6 4 3 9 9 H 1.48506 * 109.47171 * 60.00063 * 8 6 4 10 10 H 1.48495 * 109.47040 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47250 * 300.00151 * 8 6 4 12 12 C 1.34777 * 120.00031 * 276.70190 * 3 2 1 13 13 O 1.21632 * 119.99924 * 184.26193 * 12 3 2 14 14 C 1.47434 * 120.00318 * 4.26230 * 12 3 2 15 15 C 1.39830 * 120.14543 * 305.02753 * 14 12 3 16 16 C 1.37732 * 119.94621 * 179.97438 * 15 14 12 17 17 C 1.38505 * 120.33372 * 0.06977 * 16 15 14 18 18 C 1.38613 * 120.42168 * 0.26390 * 17 16 15 19 19 C 1.38969 * 119.91071 * 359.36094 * 18 17 16 20 20 O 1.35813 * 120.87201 * 180.55032 * 19 18 17 21 21 C 1.43179 * 116.74294 * 342.97546 * 20 19 18 22 22 C 1.53471 * 108.24792 * 46.15941 * 21 20 19 23 23 O 1.36134 * 119.35934 * 179.97438 * 18 17 16 24 24 H 1.09009 * 109.47072 * 59.99626 * 1 2 3 25 25 H 1.08996 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47164 * 300.00183 * 1 2 3 27 27 H 1.09004 * 109.47352 * 240.00286 * 2 1 3 28 28 H 1.08998 * 109.47132 * 119.99932 * 2 1 3 29 29 H 0.97004 * 119.99936 * 179.97438 * 7 6 4 30 30 H 1.07999 * 120.02361 * 359.96318 * 15 14 12 31 31 H 1.08004 * 119.83254 * 180.02562 * 16 15 14 32 32 H 1.08004 * 119.78734 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.70703 * 165.84776 * 21 20 19 34 34 H 1.08997 * 109.70601 * 286.47164 * 21 20 19 35 35 H 1.08996 * 109.70848 * 60.01509 * 22 21 20 36 36 H 1.08997 * 109.70700 * 180.60606 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3770 1.9805 1.1776 5 1 3.0186 2.8491 1.1679 6 6 1.9152 1.4708 2.3857 7 7 1.0971 0.4429 2.3953 8 14 2.4579 2.2475 3.9956 9 1 2.0395 3.6721 4.0238 10 1 1.8303 1.5241 5.1305 11 1 3.9360 2.1633 4.1122 12 6 2.1145 2.0619 -1.1592 13 8 2.5923 3.1804 -1.1698 14 6 1.6407 1.4509 -2.4145 15 6 2.1283 0.2034 -2.8161 16 6 1.6824 -0.3638 -3.9893 17 6 0.7530 0.2959 -4.7763 18 6 0.2651 1.5362 -4.3956 19 6 0.6996 2.1179 -3.2106 20 8 0.2261 3.3272 -2.8133 21 6 -0.4209 4.1251 -3.8107 22 6 -1.3959 3.2283 -4.5856 23 8 -0.6475 2.1657 -5.1857 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.7751 0.0870 3.2383 30 1 2.8541 -0.3147 -2.2069 31 1 2.0599 -1.3277 -4.2975 32 1 0.4097 -0.1569 -5.6948 33 1 -0.9689 4.9373 -3.3331 34 1 0.3235 4.5348 -4.4935 35 1 -2.1371 2.8144 -3.9019 36 1 -1.8948 3.8108 -5.3600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:09 Heat of formation + Delta-G solvation = -52.600355 kcal Electronic energy + Delta-G solvation = -22368.143101 eV Core-core repulsion = 19012.410742 eV Total energy + Delta-G solvation = -3355.732359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.00199 -38.76111 -37.05086 -36.72626 -34.96542 -31.88490 -30.97677 -30.26292 -29.29559 -28.18010 -25.30743 -24.44306 -23.18248 -21.90927 -20.70211 -19.63477 -18.21713 -17.27339 -16.93772 -16.53826 -15.86142 -15.11846 -14.82781 -14.50336 -14.40296 -14.10210 -14.04616 -13.86958 -13.10344 -13.00635 -12.71827 -12.62498 -11.88242 -11.69314 -11.57652 -11.16583 -10.99671 -10.89402 -10.84816 -10.73916 -10.36943 -10.30681 -10.08585 -9.80024 -8.85057 -8.43806 -8.13262 -7.76833 -7.59328 -6.22328 -3.83455 1.45327 1.64056 3.20130 3.21700 3.25148 3.29641 3.48655 3.76111 4.06934 4.26668 4.37891 4.75300 4.91184 4.97672 5.12740 5.16369 5.28829 5.33332 5.55926 5.57186 5.68966 5.72749 6.08881 6.33113 6.37892 6.47221 6.70488 6.73790 6.80447 6.89060 6.92162 7.17617 7.40570 7.55838 7.71429 7.80584 8.15723 8.57117 9.20128 9.45200 10.02655 10.70639 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.006044 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.837603 B = 4631.277131 C = 5065.431606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.111 3.889 3 N -0.432 5.432 4 C -0.292 4.292 5 H 0.100 0.900 6 C 0.025 3.975 7 N -0.877 5.877 8 Si 0.932 3.068 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.489 3.511 13 O -0.579 6.579 14 C -0.079 4.079 15 C -0.096 4.096 16 C -0.123 4.123 17 C -0.116 4.116 18 C 0.038 3.962 19 C 0.085 3.915 20 O -0.283 6.283 21 C 0.019 3.981 22 C 0.021 3.979 23 O -0.311 6.311 24 H 0.018 0.982 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.112 0.888 29 H 0.266 0.734 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 -1.762 -11.179 12.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.012 4.012 3 N -0.150 5.150 4 C -0.420 4.420 5 H 0.118 0.882 6 C -0.177 4.177 7 N -0.518 5.518 8 Si 0.758 3.242 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.277 3.723 13 O -0.464 6.464 14 C -0.083 4.083 15 C -0.115 4.115 16 C -0.141 4.141 17 C -0.135 4.135 18 C -0.006 4.006 19 C 0.038 3.962 20 O -0.196 6.196 21 C -0.057 4.057 22 C -0.055 4.055 23 O -0.226 6.226 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.493 -1.275 -10.973 11.926 hybrid contribution -0.169 0.387 0.726 0.840 sum -4.662 -0.888 -10.247 11.293 Atomic orbital electron populations 1.22092 0.96951 0.99447 1.01362 1.21821 0.94646 0.83477 1.01234 1.43681 1.54816 1.11355 1.05141 1.19726 1.27299 1.12748 0.82237 0.88176 1.25353 0.95892 0.96800 0.99656 1.70022 1.31511 1.23517 1.26706 0.85908 0.78775 0.79146 0.80327 1.19927 1.20926 1.19935 1.17605 0.85554 0.85884 0.83306 1.90616 1.49672 1.19825 1.86268 1.19642 0.95973 0.95284 0.97420 1.21183 1.00291 0.93567 0.96445 1.20737 0.98356 1.00241 0.94771 1.20342 0.99958 0.91811 1.01387 1.18729 0.95085 0.94321 0.92508 1.18798 0.96320 0.86762 0.94309 1.86477 1.71567 1.26320 1.35268 1.23606 0.96113 0.93826 0.92152 1.23601 0.93636 0.88888 0.99381 1.86242 1.50314 1.48297 1.37740 0.96341 0.94665 0.89410 0.94302 0.87027 0.92295 0.84482 0.85120 0.85238 0.86346 0.90701 0.90640 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.55 37.16 0.35 -2.79 16 2 C 0.11 2.57 5.01 -4.04 -0.02 2.55 16 3 N -0.43 -11.45 2.64 -116.03 -0.31 -11.75 16 4 C -0.29 -8.21 9.40 -14.99 -0.14 -8.35 16 5 H 0.10 2.95 7.30 -52.49 -0.38 2.56 16 6 C 0.02 0.64 5.29 -17.46 -0.09 0.55 16 7 N -0.88 -22.48 7.85 55.50 0.44 -22.04 16 8 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.49 12.93 6.69 -12.52 -0.08 12.84 16 13 O -0.58 -17.30 16.42 1.50 0.02 -17.27 16 14 C -0.08 -1.73 4.26 -104.84 -0.45 -2.18 16 15 C -0.10 -1.73 7.81 -39.17 -0.31 -2.03 16 16 C -0.12 -1.80 10.02 -39.67 -0.40 -2.20 16 17 C -0.12 -1.74 9.95 -39.34 -0.39 -2.13 16 18 C 0.04 0.66 6.49 -39.17 -0.25 0.41 16 19 C 0.08 1.74 6.50 -38.59 -0.25 1.49 16 20 O -0.28 -5.88 9.58 -38.46 -0.37 -6.25 16 21 C 0.02 0.27 7.26 37.40 0.27 0.54 16 22 C 0.02 0.25 7.26 37.40 0.27 0.52 16 23 O -0.31 -4.75 10.42 -33.00 -0.34 -5.09 16 24 H 0.02 0.40 7.32 -51.92 -0.38 0.02 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 2.21 6.22 -51.93 -0.32 1.88 16 27 H 0.04 0.79 4.14 -51.93 -0.22 0.58 16 28 H 0.11 2.75 5.88 -51.93 -0.31 2.44 16 29 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 30 H 0.14 2.32 6.64 -52.49 -0.35 1.97 16 31 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 33 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 295.89 15.07 4.46 4.46 Total: -1.00 -32.98 295.89 -6.66 -39.64 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.05 Total: 3.40 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.49 Total: -0.79 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.13 Total: -33.79 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.69 Total: -28.62 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.98 -6.66 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.964 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds