Wall clock time and date at job start Mon Mar 30 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47267 * 2 1 4 4 C 1.36914 * 120.00131 * 96.70237 * 3 2 1 5 5 H 1.07993 * 120.00089 * 160.35962 * 4 3 2 6 6 C 1.39022 * 119.99554 * 340.35809 * 4 3 2 7 7 N 1.31378 * 120.00200 * 357.61864 * 6 4 3 8 8 Si 1.86800 * 119.99759 * 177.61238 * 6 4 3 9 9 H 1.48506 * 109.47171 * 60.00063 * 8 6 4 10 10 H 1.48495 * 109.47040 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47250 * 300.00151 * 8 6 4 12 12 C 1.34777 * 120.00031 * 276.70190 * 3 2 1 13 13 O 1.21632 * 119.99924 * 184.26193 * 12 3 2 14 14 C 1.47434 * 120.00318 * 4.26230 * 12 3 2 15 15 C 1.39830 * 120.14543 * 305.02753 * 14 12 3 16 16 C 1.37732 * 119.94621 * 179.97438 * 15 14 12 17 17 C 1.38505 * 120.33372 * 0.06977 * 16 15 14 18 18 C 1.38613 * 120.42168 * 0.26390 * 17 16 15 19 19 C 1.38969 * 119.91071 * 359.36094 * 18 17 16 20 20 O 1.35813 * 120.87201 * 180.55032 * 19 18 17 21 21 C 1.43179 * 116.74294 * 342.97546 * 20 19 18 22 22 C 1.53471 * 108.24792 * 46.15941 * 21 20 19 23 23 O 1.36134 * 119.35934 * 179.97438 * 18 17 16 24 24 H 1.09009 * 109.47072 * 59.99626 * 1 2 3 25 25 H 1.08996 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47164 * 300.00183 * 1 2 3 27 27 H 1.09004 * 109.47352 * 240.00286 * 2 1 3 28 28 H 1.08998 * 109.47132 * 119.99932 * 2 1 3 29 29 H 0.97004 * 119.99936 * 179.97438 * 7 6 4 30 30 H 1.07999 * 120.02361 * 359.96318 * 15 14 12 31 31 H 1.08004 * 119.83254 * 180.02562 * 16 15 14 32 32 H 1.08004 * 119.78734 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.70703 * 165.84776 * 21 20 19 34 34 H 1.08997 * 109.70601 * 286.47164 * 21 20 19 35 35 H 1.08996 * 109.70848 * 60.01509 * 22 21 20 36 36 H 1.08997 * 109.70700 * 180.60606 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3770 1.9805 1.1776 5 1 3.0186 2.8491 1.1679 6 6 1.9152 1.4708 2.3857 7 7 1.0971 0.4429 2.3953 8 14 2.4579 2.2475 3.9956 9 1 2.0395 3.6721 4.0238 10 1 1.8303 1.5241 5.1305 11 1 3.9360 2.1633 4.1122 12 6 2.1145 2.0619 -1.1592 13 8 2.5923 3.1804 -1.1698 14 6 1.6407 1.4509 -2.4145 15 6 2.1283 0.2034 -2.8161 16 6 1.6824 -0.3638 -3.9893 17 6 0.7530 0.2959 -4.7763 18 6 0.2651 1.5362 -4.3956 19 6 0.6996 2.1179 -3.2106 20 8 0.2261 3.3272 -2.8133 21 6 -0.4209 4.1251 -3.8107 22 6 -1.3959 3.2283 -4.5856 23 8 -0.6475 2.1657 -5.1857 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.7751 0.0870 3.2383 30 1 2.8541 -0.3147 -2.2069 31 1 2.0599 -1.3277 -4.2975 32 1 0.4097 -0.1569 -5.6948 33 1 -0.9689 4.9373 -3.3331 34 1 0.3235 4.5348 -4.4935 35 1 -2.1371 2.8144 -3.9019 36 1 -1.8948 3.8108 -5.3600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:08 Heat of formation + Delta-G solvation = -74.423808 kcal Electronic energy + Delta-G solvation = -22369.089437 eV Core-core repulsion = 19012.410742 eV Total energy + Delta-G solvation = -3356.678695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.29878 -40.53281 -38.40286 -38.10180 -36.99689 -33.83320 -32.15634 -31.78141 -31.16515 -29.42669 -27.18988 -25.68371 -24.83907 -23.65869 -21.92005 -21.30734 -19.61336 -18.85046 -18.57851 -18.01664 -17.54647 -16.55560 -16.31244 -15.98585 -15.88710 -15.68179 -15.54258 -15.26360 -14.67870 -14.66076 -14.50895 -13.96836 -13.53125 -13.34485 -13.06562 -12.91998 -12.75056 -12.57392 -12.24441 -12.09172 -12.05154 -11.97576 -11.65188 -11.57651 -10.83525 -10.40092 -9.69705 -9.48299 -9.07168 -8.22939 -5.94625 0.06807 0.33416 1.39768 1.40670 1.51030 1.99213 2.05877 2.27652 2.32085 2.71773 2.96809 3.18673 3.33942 3.68422 3.90312 3.97541 4.03389 4.18534 4.29765 4.39209 4.53518 4.54748 4.60494 4.73684 4.89959 4.95291 5.07646 5.15339 5.19035 5.37915 5.44043 5.55638 5.68477 5.87753 5.94255 6.11082 6.43299 6.56063 7.15296 7.45466 8.02589 8.67340 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.006044 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.837603 B = 4631.277131 C = 5065.431606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.114 3.886 3 N -0.442 5.442 4 C -0.342 4.342 5 H 0.069 0.931 6 C -0.001 4.001 7 N -0.877 5.877 8 Si 0.993 3.007 9 H -0.282 1.282 10 H -0.264 1.264 11 H -0.269 1.269 12 C 0.478 3.522 13 O -0.634 6.634 14 C -0.118 4.118 15 C -0.103 4.103 16 C -0.102 4.102 17 C -0.102 4.102 18 C 0.035 3.965 19 C 0.062 3.938 20 O -0.330 6.330 21 C 0.007 3.993 22 C 0.023 3.977 23 O -0.311 6.311 24 H 0.012 0.988 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.273 0.727 30 H 0.141 0.859 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.141 0.859 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 -3.820 -12.917 14.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.008 4.008 3 N -0.159 5.159 4 C -0.470 4.470 5 H 0.087 0.913 6 C -0.203 4.203 7 N -0.516 5.516 8 Si 0.816 3.184 9 H -0.208 1.208 10 H -0.188 1.188 11 H -0.194 1.194 12 C 0.268 3.732 13 O -0.523 6.523 14 C -0.122 4.122 15 C -0.122 4.122 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.010 4.010 19 C 0.015 3.985 20 O -0.245 6.245 21 C -0.068 4.068 22 C -0.051 4.051 23 O -0.226 6.226 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.197 0.803 32 H 0.188 0.812 33 H 0.159 0.841 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.780 -3.382 -12.722 14.376 hybrid contribution 0.150 1.038 1.170 1.571 sum -5.630 -2.344 -11.552 13.063 Atomic orbital electron populations 1.21901 0.96324 1.00666 0.99512 1.21878 0.95052 0.81968 1.01888 1.43889 1.54650 1.12498 1.04841 1.19641 1.29641 1.13516 0.84168 0.91288 1.26041 0.95398 0.96992 1.01820 1.70115 1.30526 1.23175 1.27784 0.85018 0.78682 0.77864 0.76819 1.20800 1.18843 1.19411 1.18375 0.84506 0.85451 0.84862 1.90536 1.51985 1.22321 1.87460 1.19454 0.98818 0.97590 0.96347 1.21321 1.00428 0.92327 0.98100 1.21219 0.96752 1.01433 0.92599 1.20918 0.98411 0.90471 1.02201 1.18964 0.95420 0.95113 0.91453 1.19035 0.96931 0.87027 0.95498 1.86391 1.72487 1.27245 1.38369 1.24001 0.96663 0.94285 0.91829 1.23882 0.92585 0.88056 1.00624 1.86238 1.49912 1.48892 1.37547 0.96858 0.91702 0.92451 0.91240 0.88612 0.91615 0.84112 0.80265 0.81249 0.84113 0.90495 0.90592 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 9.55 71.98 0.69 -4.96 16 2 C 0.11 5.35 5.01 86.38 0.43 5.78 16 3 N -0.44 -24.58 2.64 -639.25 -1.69 -26.26 16 4 C -0.34 -20.33 9.40 84.09 0.79 -19.54 16 5 H 0.07 4.41 7.30 -2.91 -0.02 4.39 16 6 C 0.00 -0.05 5.29 84.95 0.45 0.40 16 7 N -0.88 -45.32 7.85 21.68 0.17 -45.15 16 8 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 C 0.48 26.82 6.69 86.67 0.58 27.40 16 13 O -0.63 -40.89 16.42 -0.55 -0.01 -40.90 16 14 C -0.12 -5.30 4.26 -20.01 -0.09 -5.39 16 15 C -0.10 -3.57 7.81 22.54 0.18 -3.39 16 16 C -0.10 -2.58 10.02 22.21 0.22 -2.36 16 17 C -0.10 -2.61 9.95 22.42 0.22 -2.39 16 18 C 0.04 1.16 6.49 22.53 0.15 1.30 16 19 C 0.06 2.56 6.50 22.91 0.15 2.71 16 20 O -0.33 -14.30 9.58 -72.99 -0.70 -15.00 16 21 C 0.01 0.19 7.26 72.14 0.52 0.72 16 22 C 0.02 0.51 7.26 72.14 0.52 1.04 16 23 O -0.31 -8.62 10.42 -82.80 -0.86 -9.48 16 24 H 0.01 0.57 7.32 -2.38 -0.02 0.55 16 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.06 2.92 6.22 -2.39 -0.01 2.90 16 27 H 0.07 2.79 4.14 -2.39 -0.01 2.78 16 28 H 0.10 4.77 5.88 -2.39 -0.01 4.75 16 29 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 30 H 0.14 4.62 6.64 -2.91 -0.02 4.60 16 31 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.14 3.12 8.14 -2.38 -0.02 3.10 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.17 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -78.20 295.89 4.87 -73.33 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.11 Total: 16.87 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 4.82 Total: 1.32 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.52 Total: -71.41 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -1.57 Total: -65.38 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -78.20 4.87 -73.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.089 kcal (2) G-P(sol) polarization free energy of solvation -78.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds