Wall clock time and date at job start Mon Mar 30 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99864 * 2 1 4 4 O 1.21723 * 120.00431 * 359.97438 * 3 2 1 5 5 C 1.46264 * 119.99801 * 179.97438 * 3 2 1 6 6 C 1.35024 * 119.99792 * 173.62991 * 5 3 2 7 7 C 1.46970 * 119.99978 * 346.77939 * 6 5 3 8 8 C 1.40025 * 120.07978 * 316.62433 * 7 6 5 9 9 C 1.37650 * 119.99622 * 179.76471 * 8 7 6 10 10 C 1.39054 * 120.16584 * 0.50600 * 9 8 7 11 11 O 1.35615 * 119.92415 * 179.76267 * 10 9 8 12 12 C 1.34753 * 116.99741 * 355.61825 * 11 10 9 13 13 H 1.07993 * 120.00633 * 5.00268 * 12 11 10 14 14 C 1.38709 * 119.99654 * 185.00948 * 12 11 10 15 15 N 1.31524 * 120.00246 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99920 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47103 * 59.99852 * 16 14 12 18 18 H 1.48504 * 109.46918 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47145 * 299.99326 * 16 14 12 20 20 C 1.39623 * 120.15522 * 359.74624 * 10 9 8 21 21 O 1.35951 * 120.00180 * 180.02562 * 20 10 9 22 22 C 1.42907 * 117.00188 * 179.97438 * 21 20 10 23 23 C 1.38080 * 119.99748 * 359.97438 * 20 10 9 24 24 H 1.08998 * 109.47297 * 300.00210 * 1 2 3 25 25 H 1.09002 * 109.47138 * 60.00135 * 1 2 3 26 26 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 27 27 H 0.96994 * 120.00105 * 179.97438 * 2 1 3 28 28 H 1.07991 * 119.99705 * 353.34931 * 5 3 2 29 29 H 1.07991 * 120.00072 * 166.78960 * 6 5 3 30 30 H 1.07998 * 120.00241 * 0.02562 * 8 7 6 31 31 H 1.08007 * 119.91923 * 180.23059 * 9 8 7 32 32 H 0.97001 * 120.00220 * 180.02562 * 15 14 12 33 33 H 1.08996 * 109.47059 * 180.02562 * 22 21 20 34 34 H 1.08997 * 109.46796 * 300.00183 * 22 21 20 35 35 H 1.08994 * 109.46548 * 60.00083 * 22 21 20 36 36 H 1.08006 * 120.07794 * 179.97438 * 23 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5303 2.2214 -0.0005 5 6 3.6015 1.1672 0.0006 6 6 4.2766 2.3293 -0.1292 7 6 3.5711 3.5450 -0.5584 8 6 2.6467 3.4863 -1.6085 9 6 1.9834 4.6251 -2.0059 10 6 2.2363 5.8376 -1.3738 11 8 1.5835 6.9574 -1.7725 12 6 0.7729 6.8446 -2.8430 13 1 0.6036 5.8774 -3.2927 14 6 0.1561 7.9708 -3.3676 15 7 0.3620 9.1487 -2.8199 16 14 -0.9670 7.8146 -4.8522 17 1 -2.0958 6.9066 -4.5255 18 1 -1.4979 9.1534 -5.2142 19 1 -0.2004 7.2596 -5.9966 20 6 3.1605 5.9048 -0.3294 21 8 3.4050 7.0917 0.2867 22 6 4.3623 7.0870 1.3477 23 6 3.8255 4.7654 0.0783 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9500 -0.8400 0.0004 28 1 4.1413 0.2382 0.1093 29 1 5.3350 2.3654 0.0823 30 1 2.4512 2.5468 -2.1039 31 1 1.2679 4.5776 -2.8136 32 1 -0.0696 9.9362 -3.1865 33 1 4.4620 8.0944 1.7516 34 1 4.0284 6.4115 2.1352 35 1 5.3263 6.7513 0.9656 36 1 4.5410 4.8160 0.8858 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045163615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:59 Heat of formation + Delta-G solvation = -38.230816 kcal Electronic energy + Delta-G solvation = -21205.365907 eV Core-core repulsion = 17850.256659 eV Total energy + Delta-G solvation = -3355.109249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78114 -39.07899 -37.42500 -36.21317 -34.26790 -32.90767 -32.07739 -29.43364 -28.71007 -27.07324 -26.14102 -25.22175 -22.85656 -21.45249 -20.94530 -19.38147 -17.95312 -17.76844 -16.49415 -16.19900 -15.47912 -15.15415 -15.02333 -14.90303 -14.47048 -14.10409 -13.76978 -13.36481 -13.33513 -13.23479 -12.74547 -12.50699 -12.26451 -12.19038 -11.63590 -11.40773 -11.32161 -11.00300 -10.87716 -10.60907 -10.46078 -10.30470 -9.49765 -9.31725 -9.09952 -8.94033 -8.63355 -7.69172 -6.61723 -6.40244 -3.92687 1.22214 2.37063 2.69730 3.16704 3.19092 3.20678 3.47109 3.66777 4.00368 4.14610 4.66528 5.02551 5.14140 5.17327 5.24360 5.27884 5.55130 5.56318 5.61720 5.65209 5.77091 5.84836 5.88031 5.94073 6.24922 6.34311 6.48346 6.54488 6.60456 6.75175 7.06234 7.20151 7.31988 7.48749 7.69744 7.74209 8.01609 8.30936 8.58346 9.03812 9.76703 10.76740 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.005715 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.570533 B = 4898.132493 C = 6337.060296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.743 5.743 3 C 0.535 3.465 4 O -0.510 6.510 5 C -0.264 4.264 6 C 0.024 3.976 7 C -0.157 4.157 8 C -0.011 4.011 9 C -0.222 4.222 10 C 0.152 3.848 11 O -0.157 6.157 12 C -0.389 4.389 13 H 0.093 0.907 14 C 0.040 3.960 15 N -0.854 5.854 16 Si 0.942 3.058 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.269 1.269 20 C 0.040 3.960 21 O -0.305 6.305 22 C 0.033 3.967 23 C -0.136 4.136 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.396 0.604 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.271 0.729 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -16.010 5.044 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.396 5.396 3 C 0.324 3.676 4 O -0.386 6.386 5 C -0.285 4.285 6 C 0.005 3.995 7 C -0.158 4.158 8 C -0.030 4.030 9 C -0.242 4.242 10 C 0.097 3.903 11 O -0.059 6.059 12 C -0.465 4.465 13 H 0.110 0.890 14 C -0.166 4.166 15 N -0.488 5.488 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.005 4.005 21 O -0.219 6.219 22 C -0.063 4.063 23 C -0.155 4.155 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.228 0.772 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.375 -14.528 5.044 16.291 hybrid contribution -0.201 -0.925 -0.470 1.056 sum 5.173 -15.452 4.575 16.925 Atomic orbital electron populations 1.21445 0.80161 1.01418 1.02400 1.45803 1.07382 1.08690 1.77682 1.18533 0.88674 0.83526 0.76819 1.91011 1.70064 1.29978 1.47570 1.22619 0.93020 0.98754 1.14131 1.22293 0.98086 0.91632 0.87526 1.18026 1.04199 0.91778 1.01800 1.20504 0.92009 0.96010 0.94436 1.20720 1.06192 0.91673 1.05576 1.18816 0.91096 0.88012 0.92415 1.83988 1.50659 1.28252 1.43040 1.21383 1.23413 0.95787 1.05905 0.88961 1.25327 0.98076 0.94169 0.98981 1.70047 1.40794 0.98526 1.39405 0.85777 0.79623 0.77955 0.80056 1.19450 1.20240 1.19438 1.17932 1.00092 0.85245 0.97235 1.86222 1.59035 1.28853 1.47827 1.22850 0.91516 1.02625 0.89347 1.20678 1.01999 0.91304 1.01504 0.92509 0.92299 0.91319 0.77160 0.86091 0.86062 0.88272 0.85112 0.91919 0.89247 0.93767 0.93724 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 10.70 59.85 0.64 1.59 16 2 N -0.74 -8.32 5.71 -68.55 -0.39 -8.71 16 3 C 0.53 8.14 6.78 -13.04 -0.09 8.06 16 4 O -0.51 -10.33 12.36 5.17 0.06 -10.27 16 5 C -0.26 -3.38 9.88 -37.50 -0.37 -3.75 16 6 C 0.02 0.35 9.79 -37.19 -0.36 -0.02 16 7 C -0.16 -2.97 4.49 -105.04 -0.47 -3.45 16 8 C -0.01 -0.23 6.68 -39.13 -0.26 -0.49 16 9 C -0.22 -5.30 9.14 -39.49 -0.36 -5.66 16 10 C 0.15 4.03 6.67 -38.76 -0.26 3.77 16 11 O -0.16 -4.80 9.52 -13.93 -0.13 -4.93 16 12 C -0.39 -11.35 9.48 30.91 0.29 -11.06 16 13 H 0.09 2.49 5.18 -52.49 -0.27 2.22 16 14 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 15 N -0.85 -25.83 13.67 55.48 0.76 -25.07 16 16 Si 0.94 21.06 29.55 -169.99 -5.02 16.03 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 C 0.04 0.94 6.70 -39.12 -0.26 0.68 16 21 O -0.31 -7.09 10.28 -34.20 -0.35 -7.44 16 22 C 0.03 0.52 9.81 101.05 0.99 1.52 16 23 C -0.14 -2.68 8.77 -38.99 -0.34 -3.03 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.40 2.99 8.81 -40.82 -0.36 2.63 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.10 1.89 7.10 -52.49 -0.37 1.51 16 31 H 0.13 3.09 5.60 -52.48 -0.29 2.79 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 35 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 36 H 0.12 1.91 6.28 -52.48 -0.33 1.58 16 LS Contribution 312.08 15.07 4.70 4.70 Total: -1.00 -36.26 312.08 -5.42 -41.67 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.09 Total: 4.82 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.95 Total: -10.80 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.37 Total: -33.78 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.42 Total: -22.65 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.26 -5.42 -41.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045163615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.444 kcal (2) G-P(sol) polarization free energy of solvation -36.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds