Wall clock time and date at job start Mon Mar 30 2020 02:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99864 * 2 1 4 4 O 1.21723 * 120.00431 * 359.97438 * 3 2 1 5 5 C 1.46264 * 119.99801 * 179.97438 * 3 2 1 6 6 C 1.35024 * 119.99792 * 173.62991 * 5 3 2 7 7 C 1.46970 * 119.99978 * 346.77939 * 6 5 3 8 8 C 1.40025 * 120.07978 * 316.62433 * 7 6 5 9 9 C 1.37650 * 119.99622 * 179.76471 * 8 7 6 10 10 C 1.39054 * 120.16584 * 0.50600 * 9 8 7 11 11 O 1.35615 * 119.92415 * 179.76267 * 10 9 8 12 12 C 1.34753 * 116.99741 * 355.61825 * 11 10 9 13 13 H 1.07993 * 120.00633 * 5.00268 * 12 11 10 14 14 C 1.38709 * 119.99654 * 185.00948 * 12 11 10 15 15 N 1.31524 * 120.00246 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99920 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47103 * 59.99852 * 16 14 12 18 18 H 1.48504 * 109.46918 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47145 * 299.99326 * 16 14 12 20 20 C 1.39623 * 120.15522 * 359.74624 * 10 9 8 21 21 O 1.35951 * 120.00180 * 180.02562 * 20 10 9 22 22 C 1.42907 * 117.00188 * 179.97438 * 21 20 10 23 23 C 1.38080 * 119.99748 * 359.97438 * 20 10 9 24 24 H 1.08998 * 109.47297 * 300.00210 * 1 2 3 25 25 H 1.09002 * 109.47138 * 60.00135 * 1 2 3 26 26 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 27 27 H 0.96994 * 120.00105 * 179.97438 * 2 1 3 28 28 H 1.07991 * 119.99705 * 353.34931 * 5 3 2 29 29 H 1.07991 * 120.00072 * 166.78960 * 6 5 3 30 30 H 1.07998 * 120.00241 * 0.02562 * 8 7 6 31 31 H 1.08007 * 119.91923 * 180.23059 * 9 8 7 32 32 H 0.97001 * 120.00220 * 180.02562 * 15 14 12 33 33 H 1.08996 * 109.47059 * 180.02562 * 22 21 20 34 34 H 1.08997 * 109.46796 * 300.00183 * 22 21 20 35 35 H 1.08994 * 109.46548 * 60.00083 * 22 21 20 36 36 H 1.08006 * 120.07794 * 179.97438 * 23 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5303 2.2214 -0.0005 5 6 3.6015 1.1672 0.0006 6 6 4.2766 2.3293 -0.1292 7 6 3.5711 3.5450 -0.5584 8 6 2.6467 3.4863 -1.6085 9 6 1.9834 4.6251 -2.0059 10 6 2.2363 5.8376 -1.3738 11 8 1.5835 6.9574 -1.7725 12 6 0.7729 6.8446 -2.8430 13 1 0.6036 5.8774 -3.2927 14 6 0.1561 7.9708 -3.3676 15 7 0.3620 9.1487 -2.8199 16 14 -0.9670 7.8146 -4.8522 17 1 -2.0958 6.9066 -4.5255 18 1 -1.4979 9.1534 -5.2142 19 1 -0.2004 7.2596 -5.9966 20 6 3.1605 5.9048 -0.3294 21 8 3.4050 7.0917 0.2867 22 6 4.3623 7.0870 1.3477 23 6 3.8255 4.7654 0.0783 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9500 -0.8400 0.0004 28 1 4.1413 0.2382 0.1093 29 1 5.3350 2.3654 0.0823 30 1 2.4512 2.5468 -2.1039 31 1 1.2679 4.5776 -2.8136 32 1 -0.0696 9.9362 -3.1865 33 1 4.4620 8.0944 1.7516 34 1 4.0284 6.4115 2.1352 35 1 5.3263 6.7513 0.9656 36 1 4.5410 4.8160 0.8858 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045163615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:58 Heat of formation + Delta-G solvation = -66.363944 kcal Electronic energy + Delta-G solvation = -21206.585851 eV Core-core repulsion = 17850.256659 eV Total energy + Delta-G solvation = -3356.329193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34012 -40.49906 -39.23114 -37.79787 -35.44455 -34.52873 -33.84687 -31.12552 -30.22206 -28.26050 -27.60036 -27.10585 -24.21734 -23.19797 -22.34236 -20.61630 -19.86875 -19.38042 -18.08939 -17.61773 -16.86267 -16.63814 -16.57777 -16.38332 -15.99752 -15.51939 -15.32101 -15.19511 -15.01421 -14.49587 -14.01619 -13.91509 -13.72571 -13.46928 -13.05984 -13.02895 -12.80640 -12.69995 -12.52547 -12.19554 -12.02010 -11.82139 -11.36107 -10.88256 -10.69268 -10.26322 -10.01209 -9.34864 -8.46021 -8.35972 -6.09988 -0.05243 0.65125 1.10327 1.32126 1.45622 1.49778 2.17837 2.47962 2.52155 2.62280 2.85804 3.18616 3.44466 3.91321 4.06759 4.15789 4.25584 4.35264 4.44414 4.48397 4.57368 4.62590 4.63428 4.71321 4.77417 4.96208 5.00449 5.10230 5.15445 5.38055 5.52105 5.57341 5.59575 5.82858 5.97042 6.07364 6.68990 6.75777 6.97465 7.49042 7.81580 8.77473 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.005715 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.570533 B = 4898.132493 C = 6337.060296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.722 5.722 3 C 0.518 3.482 4 O -0.571 6.571 5 C -0.223 4.223 6 C -0.002 4.002 7 C -0.121 4.121 8 C -0.023 4.023 9 C -0.225 4.225 10 C 0.094 3.906 11 O -0.220 6.220 12 C -0.417 4.417 13 H 0.098 0.902 14 C -0.023 4.023 15 N -0.918 5.918 16 Si 1.021 2.979 17 H -0.259 1.259 18 H -0.267 1.267 19 H -0.255 1.255 20 C 0.027 3.973 21 O -0.348 6.348 22 C 0.022 3.978 23 C -0.136 4.136 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.113 0.887 27 H 0.419 0.581 28 H 0.179 0.821 29 H 0.172 0.828 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.273 0.727 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.206 -20.818 6.036 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.375 5.375 3 C 0.308 3.692 4 O -0.452 6.452 5 C -0.244 4.244 6 C -0.021 4.021 7 C -0.122 4.122 8 C -0.042 4.042 9 C -0.244 4.244 10 C 0.043 3.957 11 O -0.126 6.126 12 C -0.493 4.493 13 H 0.115 0.885 14 C -0.221 4.221 15 N -0.555 5.555 16 Si 0.839 3.161 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.179 1.179 20 C -0.017 4.017 21 O -0.264 6.264 22 C -0.073 4.073 23 C -0.155 4.155 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.131 0.869 27 H 0.256 0.744 28 H 0.196 0.804 29 H 0.189 0.811 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.598 -19.468 6.073 21.763 hybrid contribution -0.637 0.024 -0.456 0.784 sum 6.962 -19.445 5.616 21.403 Atomic orbital electron populations 1.21546 0.79816 1.03778 1.00661 1.45683 1.07792 1.08757 1.75237 1.19237 0.90124 0.83630 0.76240 1.91022 1.71444 1.32335 1.50380 1.23131 0.91492 1.00423 1.09322 1.22574 1.00331 0.89440 0.89757 1.18696 1.01014 0.93726 0.98752 1.20697 0.92630 0.95305 0.95546 1.20819 1.06264 0.92281 1.05083 1.19467 0.93307 0.88166 0.94765 1.83953 1.53477 1.30318 1.44873 1.21828 1.24300 0.96532 1.06638 0.88513 1.26658 0.99682 0.93377 1.02375 1.70204 1.43605 0.99555 1.42173 0.84640 0.77284 0.78475 0.75678 1.18381 1.19155 1.17914 1.18310 0.99870 0.86783 0.96773 1.86164 1.61096 1.29394 1.49705 1.23246 0.91226 1.04633 0.88149 1.21168 1.01915 0.90198 1.02189 0.94081 0.94342 0.86878 0.74429 0.80412 0.81057 0.86550 0.86466 0.91804 0.87394 0.92038 0.91217 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.70 127.77 1.37 2.97 16 2 N -0.72 -13.08 5.71 -489.01 -2.79 -15.87 16 3 C 0.52 13.77 6.78 86.33 0.59 14.36 16 4 O -0.57 -22.40 12.36 -4.42 -0.05 -22.45 16 5 C -0.22 -4.24 9.88 23.62 0.23 -4.01 16 6 C 0.00 -0.04 9.79 23.82 0.23 0.19 16 7 C -0.12 -4.27 4.49 -20.14 -0.09 -4.36 16 8 C -0.02 -0.96 6.68 22.56 0.15 -0.81 16 9 C -0.22 -11.39 9.14 22.33 0.20 -11.18 16 10 C 0.09 5.35 6.67 22.80 0.15 5.51 16 11 O -0.22 -14.74 9.52 -6.51 -0.06 -14.80 16 12 C -0.42 -26.53 9.48 67.93 0.64 -25.89 16 13 H 0.10 5.71 5.18 -2.91 -0.02 5.69 16 14 C -0.02 -1.43 5.49 84.85 0.47 -0.96 16 15 N -0.92 -59.95 13.67 21.62 0.30 -59.65 16 16 Si 1.02 45.69 29.55 68.60 2.03 47.72 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 20 C 0.03 1.34 6.70 22.57 0.15 1.49 16 21 O -0.35 -16.87 10.28 -79.03 -0.81 -17.68 16 22 C 0.02 0.68 9.81 113.37 1.11 1.79 16 23 C -0.14 -5.15 8.77 22.65 0.20 -4.95 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.42 3.83 8.81 -92.71 -0.82 3.02 16 28 H 0.18 1.51 8.06 -2.92 -0.02 1.48 16 29 H 0.17 2.33 8.06 -2.92 -0.02 2.31 16 30 H 0.12 4.29 7.10 -2.91 -0.02 4.26 16 31 H 0.12 6.03 5.60 -2.91 -0.02 6.02 16 32 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 33 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16 35 H 0.07 1.79 7.66 -2.39 -0.02 1.77 16 36 H 0.16 4.55 6.28 -2.91 -0.02 4.53 16 Total: -1.00 -91.82 312.08 4.31 -87.51 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.30 Total: 21.08 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 5.41 Total: -25.85 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -2.50 Total: -75.52 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.93 Total: -54.94 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -91.82 4.31 -87.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045163615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.146 kcal (2) G-P(sol) polarization free energy of solvation -91.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds