Wall clock time and date at job start Mon Mar 30 2020 01:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47561 * 2 1 4 4 C 1.50699 * 109.47020 * 120.00127 * 2 1 3 5 5 H 1.08003 * 120.00556 * 120.00043 * 4 2 1 6 6 C 1.37878 * 120.00195 * 299.99824 * 4 2 1 7 7 N 1.31519 * 119.99516 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00432 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46918 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47381 * 119.99850 * 8 6 4 11 11 H 1.48502 * 109.47078 * 239.99775 * 8 6 4 12 12 N 1.46505 * 109.47167 * 239.99577 * 2 1 3 13 13 C 1.34775 * 119.99577 * 84.99810 * 12 2 1 14 14 O 1.21285 * 120.00072 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99998 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.70505 * 54.41180 * 15 13 12 17 17 C 1.53475 * 109.74385 * 293.80622 * 15 13 12 18 18 O 1.43172 * 108.25371 * 180.57366 * 17 15 13 19 19 C 1.36103 * 116.71822 * 46.16793 * 18 17 15 20 20 C 1.38708 * 119.40142 * 162.97826 * 19 18 17 21 21 C 1.38194 * 120.06410 * 179.91687 * 20 19 18 22 22 C 1.38254 * 120.11778 * 359.44212 * 21 20 19 23 23 C 1.38188 * 120.10767 * 0.63459 * 22 21 20 24 24 C 1.38702 * 120.07199 * 359.69407 * 23 22 21 25 25 O 1.36105 * 119.39990 * 179.84090 * 24 23 22 26 26 H 1.09002 * 109.47145 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46884 * 299.99997 * 1 2 3 28 28 H 1.08991 * 109.47342 * 60.00429 * 1 2 3 29 29 H 0.97001 * 120.00011 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00233 * 265.00717 * 12 2 1 31 31 H 1.09004 * 109.70336 * 300.25757 * 17 15 13 32 32 H 1.08991 * 109.70965 * 60.83706 * 17 15 13 33 33 H 1.08002 * 119.96266 * 359.63227 * 20 19 18 34 34 H 1.08003 * 119.93543 * 179.71188 * 21 20 19 35 35 H 1.07992 * 119.94498 * 180.34635 * 22 21 20 36 36 H 1.08000 * 119.96842 * 179.71812 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6038 10 1 3.1472 -0.1858 4.8161 11 1 1.1677 -1.5865 4.8166 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8589 1.1585 -2.4115 15 6 2.6488 -0.7289 -3.5878 16 1 2.0363 -1.6100 -3.7788 17 6 4.1107 -1.1492 -3.3839 18 8 4.5582 -1.8076 -4.5739 19 6 4.2583 -1.2044 -5.7566 20 6 4.9449 -1.5752 -6.9034 21 6 4.6503 -0.9729 -8.1118 22 6 3.6630 -0.0078 -8.1834 23 6 2.9764 0.3674 -7.0444 24 6 3.2717 -0.2282 -5.8271 25 8 2.5891 0.1540 -4.7133 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8899 29 1 0.7087 1.1613 3.4844 30 1 2.2489 -1.6319 -1.1526 31 1 4.7242 -0.2674 -3.1989 32 1 4.1824 -1.8311 -2.5367 33 1 5.7136 -2.3320 -6.8509 34 1 5.1894 -1.2599 -9.0026 35 1 3.4313 0.4571 -9.1303 36 1 2.2087 1.1248 -7.1021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:04 Heat of formation + Delta-G solvation = -82.128955 kcal Electronic energy + Delta-G solvation = -21143.049698 eV Core-core repulsion = 17786.036883 eV Total energy + Delta-G solvation = -3357.012815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42082 -39.06120 -37.60432 -37.18714 -34.90507 -32.69433 -31.46312 -30.75377 -29.26620 -28.09795 -25.40859 -25.21076 -22.95360 -22.05646 -20.74745 -19.66502 -18.81792 -17.92839 -17.48578 -16.55660 -15.78077 -15.52664 -15.32367 -15.08634 -14.70753 -14.53103 -14.21217 -13.95159 -13.86383 -13.28064 -13.17095 -12.53666 -12.19056 -12.00518 -11.82625 -11.43500 -11.20404 -11.16096 -11.02141 -10.87146 -10.57341 -10.38237 -10.31573 -9.22406 -9.14082 -8.77032 -8.65064 -8.15920 -8.11555 -6.20334 -4.30576 1.17023 1.19568 2.73696 2.95030 3.06778 3.19253 3.27515 3.29717 3.59819 3.95308 4.18099 4.29707 4.53229 4.73985 4.83940 5.01666 5.10853 5.12822 5.15398 5.28633 5.30878 5.43129 5.72711 6.00747 6.08066 6.32359 6.49964 6.71902 6.81553 6.86024 7.03995 7.25965 7.31971 7.43674 7.58838 7.79788 8.04657 8.44218 8.64788 8.88497 9.36977 10.85684 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039540 B = 0.003744 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.975880 B = 7477.677595 C = 8025.425311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.700 5.700 13 C 0.512 3.488 14 O -0.523 6.523 15 C 0.032 3.968 16 H 0.106 0.894 17 C 0.035 3.965 18 O -0.304 6.304 19 C 0.046 3.954 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.114 4.114 24 C 0.057 3.943 25 O -0.277 6.277 26 H 0.028 0.972 27 H 0.092 0.908 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.390 0.610 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 -6.026 -17.033 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.350 5.350 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.028 4.028 16 H 0.123 0.877 17 C -0.041 4.041 18 O -0.218 6.218 19 C 0.001 3.999 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.135 4.135 23 C -0.132 4.132 24 C 0.011 3.989 25 O -0.191 6.191 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.223 0.777 31 H 0.104 0.896 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.791 -5.031 -16.816 18.483 hybrid contribution 0.304 -0.933 1.067 1.449 sum 6.095 -5.963 -15.749 17.909 Atomic orbital electron populations 1.22099 0.98184 0.99344 1.01145 1.18850 0.91236 0.94062 0.79377 0.93080 1.21214 1.32761 1.13386 0.90124 0.91852 1.24896 0.94717 0.94931 0.99135 1.69910 1.35643 1.22368 1.23969 0.86361 0.78632 0.79497 0.82418 1.19680 1.20812 1.20819 1.46499 1.65041 1.13645 1.09852 1.19498 0.80003 0.87571 0.83611 1.90724 1.49582 1.15385 1.84239 1.23107 0.98188 0.94019 0.87509 0.87681 1.23607 0.93291 1.00322 0.86911 1.86311 1.75401 1.48074 1.12021 1.18993 0.96381 0.97272 0.87286 1.20428 1.00362 1.02202 0.90295 1.20888 0.98729 0.97402 0.96997 1.20901 0.96645 0.98232 0.97725 1.20488 1.01822 1.01836 0.89100 1.19094 0.93460 0.98121 0.88229 1.86443 1.67822 1.45370 1.19430 0.95267 0.88901 0.96524 0.92487 0.77699 0.89625 0.85083 0.84876 0.85209 0.85138 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.27 6.54 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.67 8.73 -34.44 -0.30 -13.97 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.30 11.32 55.43 0.63 -23.67 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.70 -13.80 5.05 -54.93 -0.28 -14.08 16 13 C 0.51 10.12 7.15 -10.98 -0.08 10.04 16 14 O -0.52 -12.81 16.18 -14.14 -0.23 -13.04 16 15 C 0.03 0.51 3.44 -27.64 -0.09 0.42 16 16 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 17 C 0.03 0.47 6.53 37.40 0.24 0.71 16 18 O -0.30 -4.19 10.42 -32.86 -0.34 -4.53 16 19 C 0.05 0.63 6.49 -39.13 -0.25 0.38 16 20 C -0.11 -1.27 9.96 -39.42 -0.39 -1.66 16 21 C -0.12 -1.14 10.04 -39.59 -0.40 -1.54 16 22 C -0.12 -1.14 10.04 -39.59 -0.40 -1.54 16 23 C -0.11 -1.41 9.96 -39.43 -0.39 -1.81 16 24 C 0.06 0.84 6.49 -39.14 -0.25 0.59 16 25 O -0.28 -4.82 9.62 -47.03 -0.45 -5.28 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 6.37 8.49 -40.82 -0.35 6.02 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.13 1.43 8.09 -51.93 -0.42 1.01 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -31.40 310.48 -7.66 -39.06 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.40 Total: 5.46 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.25 Total: -3.67 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.35 Total: -37.76 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.02 Total: -22.85 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.40 -7.66 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.068 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds