Wall clock time and date at job start Mon Mar 30 2020 01:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47561 * 2 1 4 4 C 1.50699 * 109.47020 * 120.00127 * 2 1 3 5 5 H 1.08003 * 120.00556 * 120.00043 * 4 2 1 6 6 C 1.37878 * 120.00195 * 299.99824 * 4 2 1 7 7 N 1.31519 * 119.99516 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00432 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46918 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47381 * 119.99850 * 8 6 4 11 11 H 1.48502 * 109.47078 * 239.99775 * 8 6 4 12 12 N 1.46505 * 109.47167 * 239.99577 * 2 1 3 13 13 C 1.34775 * 119.99577 * 84.99810 * 12 2 1 14 14 O 1.21285 * 120.00072 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99998 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.70505 * 54.41180 * 15 13 12 17 17 C 1.53475 * 109.74385 * 293.80622 * 15 13 12 18 18 O 1.43172 * 108.25371 * 180.57366 * 17 15 13 19 19 C 1.36103 * 116.71822 * 46.16793 * 18 17 15 20 20 C 1.38708 * 119.40142 * 162.97826 * 19 18 17 21 21 C 1.38194 * 120.06410 * 179.91687 * 20 19 18 22 22 C 1.38254 * 120.11778 * 359.44212 * 21 20 19 23 23 C 1.38188 * 120.10767 * 0.63459 * 22 21 20 24 24 C 1.38702 * 120.07199 * 359.69407 * 23 22 21 25 25 O 1.36105 * 119.39990 * 179.84090 * 24 23 22 26 26 H 1.09002 * 109.47145 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46884 * 299.99997 * 1 2 3 28 28 H 1.08991 * 109.47342 * 60.00429 * 1 2 3 29 29 H 0.97001 * 120.00011 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00233 * 265.00717 * 12 2 1 31 31 H 1.09004 * 109.70336 * 300.25757 * 17 15 13 32 32 H 1.08991 * 109.70965 * 60.83706 * 17 15 13 33 33 H 1.08002 * 119.96266 * 359.63227 * 20 19 18 34 34 H 1.08003 * 119.93543 * 179.71188 * 21 20 19 35 35 H 1.07992 * 119.94498 * 180.34635 * 22 21 20 36 36 H 1.08000 * 119.96842 * 179.71812 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6038 10 1 3.1472 -0.1858 4.8161 11 1 1.1677 -1.5865 4.8166 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8589 1.1585 -2.4115 15 6 2.6488 -0.7289 -3.5878 16 1 2.0363 -1.6100 -3.7788 17 6 4.1107 -1.1492 -3.3839 18 8 4.5582 -1.8076 -4.5739 19 6 4.2583 -1.2044 -5.7566 20 6 4.9449 -1.5752 -6.9034 21 6 4.6503 -0.9729 -8.1118 22 6 3.6630 -0.0078 -8.1834 23 6 2.9764 0.3674 -7.0444 24 6 3.2717 -0.2282 -5.8271 25 8 2.5891 0.1540 -4.7133 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8899 29 1 0.7087 1.1613 3.4844 30 1 2.2489 -1.6319 -1.1526 31 1 4.7242 -0.2674 -3.1989 32 1 4.1824 -1.8311 -2.5367 33 1 5.7136 -2.3320 -6.8509 34 1 5.1894 -1.2599 -9.0026 35 1 3.4313 0.4571 -9.1303 36 1 2.2087 1.1248 -7.1021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:04 Heat of formation + Delta-G solvation = -102.688414 kcal Electronic energy + Delta-G solvation = -21143.941223 eV Core-core repulsion = 17786.036883 eV Total energy + Delta-G solvation = -3357.904340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.51310 -40.60620 -38.57091 -38.34651 -36.77869 -34.52236 -32.79663 -31.63927 -30.78948 -29.36931 -27.37625 -26.41355 -23.94028 -23.50007 -22.09523 -21.31295 -19.91926 -19.41178 -18.55988 -17.98240 -17.26088 -17.12660 -16.64356 -16.37163 -15.87672 -15.79451 -15.48942 -15.20856 -14.87837 -14.80126 -14.47040 -14.40804 -13.75611 -13.13706 -13.03465 -12.93170 -12.84691 -12.77225 -12.39738 -12.30308 -12.20686 -12.11867 -11.65644 -11.13398 -10.88000 -10.62926 -9.94039 -9.66548 -9.13249 -8.19517 -6.37383 0.29308 0.29432 1.39225 1.45554 1.45740 1.54691 1.60184 1.98985 2.38990 2.62315 2.74332 3.05412 3.11946 3.53428 3.59163 3.64854 4.03944 4.13197 4.25850 4.34785 4.43374 4.54501 4.70235 4.84956 4.87548 5.03849 5.17642 5.21008 5.34477 5.50587 5.51220 5.61820 5.70136 5.78178 5.86273 6.04336 6.31524 6.67348 6.75720 7.22367 7.38573 8.87272 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039540 B = 0.003744 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.975880 B = 7477.677595 C = 8025.425311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.271 3.729 3 H 0.002 0.998 4 C -0.545 4.545 5 H 0.081 0.919 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.256 1.256 10 H -0.285 1.285 11 H -0.280 1.280 12 N -0.689 5.689 13 C 0.513 3.487 14 O -0.578 6.578 15 C 0.043 3.957 16 H 0.130 0.870 17 C 0.041 3.959 18 O -0.304 6.304 19 C 0.022 3.978 20 C -0.116 4.116 21 C -0.109 4.109 22 C -0.108 4.108 23 C -0.129 4.129 24 C 0.022 3.978 25 O -0.311 6.311 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.010 0.990 29 H 0.266 0.734 30 H 0.411 0.589 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.702 -8.485 -18.677 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.020 0.980 4 C -0.583 4.583 5 H 0.099 0.901 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.180 1.180 10 H -0.212 1.212 11 H -0.206 1.206 12 N -0.340 5.340 13 C 0.297 3.703 14 O -0.457 6.457 15 C -0.017 4.017 16 H 0.147 0.853 17 C -0.035 4.035 18 O -0.218 6.218 19 C -0.022 4.022 20 C -0.135 4.135 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.023 4.023 25 O -0.226 6.226 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.091 0.909 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.182 0.818 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.400 -7.544 -18.493 21.299 hybrid contribution -0.170 -0.115 1.406 1.421 sum 7.230 -7.659 -17.087 20.072 Atomic orbital electron populations 1.21936 0.98153 0.99833 0.99692 1.18455 0.91251 0.92122 0.81330 0.98024 1.21557 1.32725 1.13727 0.90328 0.90138 1.25819 0.94825 0.95549 1.02426 1.70063 1.36949 1.23980 1.24659 0.85258 0.78042 0.78544 0.78252 1.17996 1.21153 1.20616 1.46145 1.64656 1.14431 1.08766 1.20158 0.78613 0.86939 0.84600 1.90693 1.51823 1.17976 1.85239 1.22959 0.99945 0.93495 0.85339 0.85265 1.23613 0.91297 1.00653 0.87929 1.86304 1.75396 1.48068 1.12069 1.19330 0.97080 0.97807 0.88007 1.20832 1.00241 1.02463 0.89941 1.21395 0.97804 0.95846 0.97637 1.21335 0.95604 0.97681 0.97944 1.20770 1.02558 1.02061 0.89416 1.19459 0.94785 0.99998 0.88048 1.86367 1.69044 1.46606 1.20543 0.93604 0.91237 0.97074 0.92512 0.75308 0.90876 0.82355 0.82839 0.81286 0.81789 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 13.70 2.56 44.24 0.11 13.81 16 3 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 4 C -0.55 -27.68 8.73 25.60 0.22 -27.46 16 5 H 0.08 3.73 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -51.83 11.32 21.45 0.24 -51.59 16 8 Si 0.97 40.80 29.54 68.60 2.03 42.82 16 9 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 10 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 N -0.69 -27.28 5.05 -446.09 -2.25 -29.53 16 13 C 0.51 20.83 7.15 87.66 0.63 21.46 16 14 O -0.58 -29.83 16.18 15.79 0.26 -29.58 16 15 C 0.04 1.35 3.44 30.01 0.10 1.45 16 16 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 17 C 0.04 1.07 6.53 72.14 0.47 1.54 16 18 O -0.30 -7.97 10.42 -82.49 -0.86 -8.83 16 19 C 0.02 0.59 6.49 22.56 0.15 0.74 16 20 C -0.12 -2.25 9.96 22.37 0.22 -2.03 16 21 C -0.11 -1.61 10.04 22.26 0.22 -1.38 16 22 C -0.11 -1.78 10.04 22.26 0.22 -1.56 16 23 C -0.13 -3.12 9.96 22.37 0.22 -2.90 16 24 C 0.02 0.64 6.49 22.56 0.15 0.79 16 25 O -0.31 -11.15 9.62 -68.96 -0.66 -11.81 16 26 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.41 12.83 8.49 -92.71 -0.79 12.05 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.16 3.15 8.09 -2.39 -0.02 3.13 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -71.26 310.48 2.90 -68.36 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.32 Total: 20.72 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 3.84 Total: -0.56 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.01 Total: -81.13 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -1.27 Total: -50.22 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -71.26 2.90 -68.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.332 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds