Wall clock time and date at job start Mon Mar 30 2020 01:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47135 * 2 1 4 4 C 1.50704 * 109.46961 * 239.99977 * 2 1 3 5 5 H 1.07996 * 119.99899 * 239.99898 * 4 2 1 6 6 C 1.37877 * 119.99940 * 60.00161 * 4 2 1 7 7 N 1.31521 * 119.99744 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00039 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47279 * 60.00187 * 8 6 4 10 10 H 1.48503 * 109.47211 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47163 * 300.00007 * 8 6 4 12 12 N 1.46503 * 109.47336 * 120.00384 * 2 1 3 13 13 C 1.34775 * 119.99765 * 275.00172 * 12 2 1 14 14 O 1.21286 * 120.00323 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99978 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.70021 * 305.57231 * 15 13 12 17 17 C 1.53465 * 109.70828 * 66.19315 * 15 13 12 18 18 O 1.43173 * 108.24201 * 179.40103 * 17 15 13 19 19 C 1.36110 * 116.70528 * 313.75749 * 18 17 15 20 20 C 1.38704 * 119.39799 * 197.21449 * 19 18 17 21 21 C 1.38195 * 120.06513 * 180.27377 * 20 19 18 22 22 C 1.38251 * 120.11254 * 359.97438 * 21 20 19 23 23 C 1.38192 * 120.11569 * 359.92552 * 22 21 20 24 24 C 1.38706 * 120.06851 * 0.02562 * 23 22 21 25 25 O 1.36100 * 119.40155 * 180.24153 * 24 23 22 26 26 H 1.09000 * 109.47220 * 59.99788 * 1 2 3 27 27 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47305 * 299.99719 * 1 2 3 29 29 H 0.96993 * 119.99519 * 180.02562 * 7 6 4 30 30 H 0.96999 * 120.00313 * 94.99572 * 12 2 1 31 31 H 1.08996 * 109.71095 * 299.09540 * 17 15 13 32 32 H 1.09004 * 109.70762 * 59.71726 * 17 15 13 33 33 H 1.07997 * 119.96348 * 0.54878 * 20 19 18 34 34 H 1.07997 * 119.93846 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.93702 * 179.90158 * 22 21 20 36 36 H 1.08002 * 119.96498 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4191 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6489 -0.7290 3.5877 16 1 2.0361 -1.6100 3.7789 17 6 4.1107 -1.1488 3.3829 18 8 4.5589 -1.8068 4.5729 19 6 4.2608 -1.2023 5.7554 20 6 4.9510 -1.5699 6.9010 21 6 4.6555 -0.9691 8.1099 22 6 3.6720 -0.0001 8.1809 23 6 2.9820 0.3722 7.0429 24 6 3.2742 -0.2260 5.8261 25 8 2.5897 0.1545 4.7130 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7080 1.1609 -3.4843 30 1 2.2490 -1.6319 1.1526 31 1 4.1819 -1.8315 2.5362 32 1 4.7239 -0.2670 3.1973 33 1 5.7231 -2.3231 6.8472 34 1 5.1945 -1.2565 9.0006 35 1 3.4424 0.4664 9.1275 36 1 2.2144 1.1297 7.1011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:09 Heat of formation + Delta-G solvation = -82.077892 kcal Electronic energy + Delta-G solvation = -21143.149487 eV Core-core repulsion = 17786.138886 eV Total energy + Delta-G solvation = -3357.010601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41991 -39.06086 -37.60350 -37.18576 -34.90379 -32.69351 -31.46310 -30.75304 -29.26548 -28.09726 -25.40621 -25.20859 -22.95337 -22.05526 -20.74643 -19.66436 -18.81699 -17.92705 -17.48465 -16.55479 -15.77777 -15.52607 -15.32214 -15.08496 -14.70665 -14.53106 -14.21679 -13.94936 -13.86494 -13.28102 -13.17234 -12.52741 -12.19065 -12.00888 -11.81678 -11.43010 -11.20871 -11.15791 -11.01496 -10.86726 -10.57606 -10.40867 -10.30634 -9.22224 -9.15595 -8.76968 -8.64261 -8.15935 -8.11503 -6.19842 -4.30353 1.17060 1.19617 2.73661 2.95138 3.06908 3.21233 3.27109 3.28012 3.59828 3.95270 4.18116 4.29916 4.53231 4.73992 4.83976 5.01669 5.10951 5.12988 5.15449 5.28659 5.30900 5.43071 5.72744 6.00777 6.08091 6.32401 6.49988 6.71994 6.81547 6.86153 7.04047 7.26043 7.32004 7.43671 7.58693 7.79872 8.04861 8.44272 8.64660 8.88444 9.37095 10.86106 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039531 B = 0.003744 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.131632 B = 7476.929824 C = 8024.567084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.511 3.489 14 O -0.523 6.523 15 C 0.032 3.968 16 H 0.106 0.894 17 C 0.035 3.965 18 O -0.304 6.304 19 C 0.046 3.954 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.114 4.114 24 C 0.057 3.943 25 O -0.277 6.277 26 H 0.093 0.907 27 H 0.028 0.972 28 H 0.016 0.984 29 H 0.266 0.734 30 H 0.390 0.610 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -6.003 17.007 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.069 0.931 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.350 5.350 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.028 4.028 16 H 0.123 0.877 17 C -0.041 4.041 18 O -0.218 6.218 19 C 0.000 4.000 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.135 4.135 23 C -0.133 4.133 24 C 0.011 3.989 25 O -0.191 6.191 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.223 0.777 31 H 0.149 0.851 32 H 0.104 0.896 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.784 -5.000 16.785 18.444 hybrid contribution 0.317 -0.952 -1.058 1.458 sum 6.101 -5.952 15.727 17.888 Atomic orbital electron populations 1.22102 0.98190 0.99336 1.01141 1.18839 0.91227 0.94048 0.79345 0.93087 1.21140 1.32918 1.13427 0.90155 0.91955 1.24890 0.94706 0.94920 0.99107 1.69889 1.35512 1.22318 1.24192 0.86471 0.79184 0.79572 0.81663 1.20091 1.21076 1.20110 1.46499 1.65040 1.13643 1.09856 1.19500 0.80004 0.87575 0.83614 1.90724 1.49581 1.15385 1.84239 1.23112 0.98193 0.94014 0.87507 0.87664 1.23608 0.93279 1.00330 0.86914 1.86316 1.75455 1.48008 1.12030 1.18992 0.96376 0.97283 0.87302 1.20428 1.00284 1.02256 0.90308 1.20886 0.98792 0.97363 0.96987 1.20902 0.96667 0.98187 0.97734 1.20489 1.01801 1.01850 0.89118 1.19095 0.93444 0.98098 0.88245 1.86445 1.67710 1.45411 1.19496 0.88896 0.95272 0.96535 0.92367 0.77704 0.85082 0.89621 0.84879 0.85210 0.85139 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.27 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.33 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.70 -13.81 5.05 -54.93 -0.28 -14.09 16 13 C 0.51 10.12 7.15 -10.98 -0.08 10.04 16 14 O -0.52 -12.81 16.18 -14.15 -0.23 -13.04 16 15 C 0.03 0.51 3.44 -27.64 -0.10 0.41 16 16 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 17 C 0.03 0.47 6.53 37.40 0.24 0.71 16 18 O -0.30 -4.19 10.42 -32.88 -0.34 -4.53 16 19 C 0.05 0.63 6.49 -39.14 -0.25 0.37 16 20 C -0.11 -1.27 9.96 -39.43 -0.39 -1.66 16 21 C -0.12 -1.14 10.04 -39.59 -0.40 -1.54 16 22 C -0.12 -1.14 10.04 -39.59 -0.40 -1.54 16 23 C -0.11 -1.42 9.96 -39.43 -0.39 -1.81 16 24 C 0.06 0.84 6.49 -39.14 -0.25 0.59 16 25 O -0.28 -4.82 9.62 -47.02 -0.45 -5.28 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 6.36 8.49 -40.82 -0.35 6.02 16 31 H 0.13 1.43 8.09 -51.93 -0.42 1.01 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -31.38 310.48 -7.66 -39.04 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.40 Total: 5.53 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.25 Total: -3.68 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.35 Total: -37.79 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.02 Total: -22.85 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.38 -7.66 -39.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.037 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds