Wall clock time and date at job start Mon Mar 30 2020 01:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47135 * 2 1 4 4 C 1.50704 * 109.46961 * 239.99977 * 2 1 3 5 5 H 1.07996 * 119.99899 * 239.99898 * 4 2 1 6 6 C 1.37877 * 119.99940 * 60.00161 * 4 2 1 7 7 N 1.31521 * 119.99744 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00039 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47279 * 60.00187 * 8 6 4 10 10 H 1.48503 * 109.47211 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47163 * 300.00007 * 8 6 4 12 12 N 1.46503 * 109.47336 * 120.00384 * 2 1 3 13 13 C 1.34775 * 119.99765 * 275.00172 * 12 2 1 14 14 O 1.21286 * 120.00323 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99978 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.70021 * 305.57231 * 15 13 12 17 17 C 1.53465 * 109.70828 * 66.19315 * 15 13 12 18 18 O 1.43173 * 108.24201 * 179.40103 * 17 15 13 19 19 C 1.36110 * 116.70528 * 313.75749 * 18 17 15 20 20 C 1.38704 * 119.39799 * 197.21449 * 19 18 17 21 21 C 1.38195 * 120.06513 * 180.27377 * 20 19 18 22 22 C 1.38251 * 120.11254 * 359.97438 * 21 20 19 23 23 C 1.38192 * 120.11569 * 359.92552 * 22 21 20 24 24 C 1.38706 * 120.06851 * 0.02562 * 23 22 21 25 25 O 1.36100 * 119.40155 * 180.24153 * 24 23 22 26 26 H 1.09000 * 109.47220 * 59.99788 * 1 2 3 27 27 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47305 * 299.99719 * 1 2 3 29 29 H 0.96993 * 119.99519 * 180.02562 * 7 6 4 30 30 H 0.96999 * 120.00313 * 94.99572 * 12 2 1 31 31 H 1.08996 * 109.71095 * 299.09540 * 17 15 13 32 32 H 1.09004 * 109.70762 * 59.71726 * 17 15 13 33 33 H 1.07997 * 119.96348 * 0.54878 * 20 19 18 34 34 H 1.07997 * 119.93846 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.93702 * 179.90158 * 22 21 20 36 36 H 1.08002 * 119.96498 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4191 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6489 -0.7290 3.5877 16 1 2.0361 -1.6100 3.7789 17 6 4.1107 -1.1488 3.3829 18 8 4.5589 -1.8068 4.5729 19 6 4.2608 -1.2023 5.7554 20 6 4.9510 -1.5699 6.9010 21 6 4.6555 -0.9691 8.1099 22 6 3.6720 -0.0001 8.1809 23 6 2.9820 0.3722 7.0429 24 6 3.2742 -0.2260 5.8261 25 8 2.5897 0.1545 4.7130 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7080 1.1609 -3.4843 30 1 2.2490 -1.6319 1.1526 31 1 4.1819 -1.8315 2.5362 32 1 4.7239 -0.2670 3.1973 33 1 5.7231 -2.3231 6.8472 34 1 5.1945 -1.2565 9.0006 35 1 3.4424 0.4664 9.1275 36 1 2.2144 1.1297 7.1011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:09 Heat of formation + Delta-G solvation = -102.625091 kcal Electronic energy + Delta-G solvation = -21144.040480 eV Core-core repulsion = 17786.138886 eV Total energy + Delta-G solvation = -3357.901594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.51264 -40.60637 -38.57068 -38.34548 -36.77805 -34.52231 -32.79750 -31.63902 -30.78920 -29.36957 -27.37319 -26.41256 -23.94013 -23.49954 -22.09483 -21.31335 -19.91886 -19.41045 -18.55898 -17.97801 -17.26004 -17.12390 -16.64436 -16.37413 -15.88179 -15.79414 -15.49078 -15.20865 -14.87616 -14.80191 -14.46369 -14.40733 -13.74512 -13.13750 -13.04299 -12.92404 -12.84549 -12.75427 -12.39719 -12.28599 -12.20596 -12.16365 -11.65958 -11.15861 -10.87722 -10.61073 -9.94101 -9.66530 -9.13316 -8.19127 -6.37310 0.29333 0.29398 1.39270 1.45403 1.48543 1.53945 1.58497 1.99102 2.39217 2.62320 2.74269 3.05392 3.12062 3.53411 3.59116 3.64824 4.03928 4.13186 4.25820 4.34723 4.43351 4.54459 4.70186 4.84939 4.87568 5.03846 5.17624 5.20988 5.34450 5.50490 5.51046 5.61715 5.70111 5.78152 5.86285 6.04310 6.31494 6.67022 6.75671 7.22326 7.38629 8.87254 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039531 B = 0.003744 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.131632 B = 7476.929824 C = 8024.567084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.081 0.919 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.689 5.689 13 C 0.512 3.488 14 O -0.578 6.578 15 C 0.043 3.957 16 H 0.130 0.870 17 C 0.041 3.959 18 O -0.304 6.304 19 C 0.022 3.978 20 C -0.116 4.116 21 C -0.109 4.109 22 C -0.108 4.108 23 C -0.130 4.130 24 C 0.022 3.978 25 O -0.311 6.311 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.010 0.990 29 H 0.266 0.734 30 H 0.411 0.589 31 H 0.159 0.841 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -8.465 18.635 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.020 0.980 4 C -0.586 4.586 5 H 0.099 0.901 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.187 1.187 10 H -0.215 1.215 11 H -0.194 1.194 12 N -0.340 5.340 13 C 0.297 3.703 14 O -0.457 6.457 15 C -0.017 4.017 16 H 0.148 0.852 17 C -0.035 4.035 18 O -0.218 6.218 19 C -0.022 4.022 20 C -0.135 4.135 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.023 4.023 25 O -0.226 6.226 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.177 0.823 32 H 0.091 0.909 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.182 0.818 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.388 -7.517 18.446 21.244 hybrid contribution -0.154 -0.134 -1.389 1.404 sum 7.234 -7.651 17.056 20.045 Atomic orbital electron populations 1.21938 0.98157 0.99818 0.99693 1.18444 0.91245 0.92106 0.81307 0.98040 1.21502 1.32901 1.13815 0.90364 0.90142 1.25817 0.94796 0.95530 1.02415 1.70050 1.36854 1.23948 1.24793 0.85361 0.78698 0.78694 0.77373 1.18713 1.21475 1.19424 1.46145 1.64655 1.14432 1.08768 1.20162 0.78613 0.86943 0.84604 1.90693 1.51824 1.17978 1.85240 1.22964 0.99948 0.93490 0.85334 0.85242 1.23615 0.91285 1.00661 0.87934 1.86309 1.75449 1.48002 1.12077 1.19329 0.97076 0.97817 0.88022 1.20831 1.00171 1.02508 0.89958 1.21393 0.97860 0.95813 0.97626 1.21336 0.95613 0.97654 0.97952 1.20772 1.02543 1.02068 0.89433 1.19460 0.94765 0.99975 0.88067 1.86369 1.68935 1.46646 1.20609 0.91221 0.93621 0.97085 0.92491 0.75306 0.82346 0.90883 0.82843 0.81288 0.81788 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 13.74 2.56 44.24 0.11 13.85 16 3 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 4 C -0.55 -27.84 8.73 25.60 0.22 -27.61 16 5 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -51.90 11.32 21.45 0.24 -51.66 16 8 Si 0.97 40.76 29.54 68.60 2.03 42.79 16 9 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 12 N -0.69 -27.30 5.05 -446.09 -2.25 -29.56 16 13 C 0.51 20.84 7.15 87.66 0.63 21.46 16 14 O -0.58 -29.85 16.18 15.79 0.26 -29.60 16 15 C 0.04 1.35 3.44 30.00 0.10 1.45 16 16 H 0.13 3.38 8.14 -2.38 -0.02 3.36 16 17 C 0.04 1.07 6.53 72.14 0.47 1.54 16 18 O -0.30 -7.97 10.42 -82.57 -0.86 -8.83 16 19 C 0.02 0.58 6.49 22.56 0.15 0.73 16 20 C -0.12 -2.25 9.96 22.37 0.22 -2.03 16 21 C -0.11 -1.61 10.04 22.26 0.22 -1.38 16 22 C -0.11 -1.78 10.04 22.26 0.22 -1.56 16 23 C -0.13 -3.13 9.96 22.37 0.22 -2.90 16 24 C 0.02 0.65 6.49 22.56 0.15 0.80 16 25 O -0.31 -11.15 9.62 -68.91 -0.66 -11.82 16 26 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 27 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.41 12.84 8.49 -92.71 -0.79 12.05 16 31 H 0.16 3.15 8.09 -2.39 -0.02 3.13 16 32 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -71.26 310.48 2.90 -68.35 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.32 Total: 20.95 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 3.84 Total: -0.63 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -2.01 Total: -81.21 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -1.27 Total: -50.24 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -71.26 2.90 -68.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.274 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds