Wall clock time and date at job start Mon Mar 30 2020 01:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47127 * 2 1 4 4 C 1.50700 * 109.47050 * 120.00045 * 2 1 3 5 5 H 1.08000 * 120.00448 * 119.99944 * 4 2 1 6 6 C 1.37884 * 119.99983 * 300.00473 * 4 2 1 7 7 N 1.31513 * 119.99757 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00055 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47460 * 59.99686 * 8 6 4 10 10 H 1.48495 * 109.47054 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46868 * 299.99436 * 8 6 4 12 12 N 1.46505 * 109.47329 * 239.99790 * 2 1 3 13 13 C 1.34775 * 119.99801 * 85.00199 * 12 2 1 14 14 O 1.21593 * 119.99784 * 359.97438 * 13 12 2 15 15 C 1.47545 * 120.00109 * 180.02562 * 13 12 2 16 16 C 1.39768 * 120.13879 * 359.97438 * 15 13 12 17 17 C 1.37753 * 119.94934 * 180.02562 * 16 15 13 18 18 C 1.38485 * 120.33055 * 0.08869 * 17 16 15 19 19 C 1.38587 * 120.41133 * 0.20705 * 18 17 16 20 20 C 1.38994 * 119.90826 * 359.39273 * 19 18 17 21 21 O 1.35815 * 120.87227 * 180.66859 * 20 19 18 22 22 C 1.43459 * 116.61406 * 342.24791 * 21 20 19 23 23 C 1.53476 * 108.00671 * 46.69972 * 22 21 20 24 24 O 1.36133 * 119.36827 * 179.48059 * 19 18 17 25 25 H 1.09009 * 109.46982 * 60.00454 * 1 2 3 26 26 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47483 * 299.99873 * 1 2 3 28 28 H 0.96996 * 119.99907 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00218 * 265.00227 * 12 2 1 30 30 H 1.07998 * 120.02350 * 0.05910 * 16 15 13 31 31 H 1.07997 * 119.82910 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.79131 * 179.97438 * 18 17 16 33 33 H 1.09003 * 110.11059 * 286.92673 * 22 21 20 34 34 H 1.08993 * 109.55450 * 166.15168 * 22 21 20 35 35 H 1.08998 * 109.71633 * 180.31305 * 23 22 21 36 36 H 1.09005 * 109.74507 * 59.69802 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8276 -0.4193 5.2204 11 1 1.8278 -2.5198 4.0081 12 7 2.0184 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8575 1.1614 -2.4118 15 6 2.6385 -0.7140 -3.5620 16 6 2.9717 -2.0700 -3.5025 17 6 3.4306 -2.7155 -4.6296 18 6 3.5657 -2.0270 -5.8236 19 6 3.2453 -0.6807 -5.8972 20 6 2.7731 -0.0180 -4.7703 21 8 2.4405 1.2977 -4.8238 22 6 2.9540 2.0457 -5.9350 23 6 2.7105 1.2279 -7.2106 24 8 3.3963 -0.0222 -7.0790 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7093 1.1617 3.4843 29 1 2.2491 -1.6318 -1.1526 30 1 2.8691 -2.6115 -2.5737 31 1 3.6871 -3.7635 -4.5816 32 1 3.9267 -2.5416 -6.7018 33 1 4.0226 2.2194 -5.8081 34 1 2.4318 2.9999 -6.0049 35 1 3.0963 1.7698 -8.0741 36 1 1.6424 1.0497 -7.3356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:21 Heat of formation + Delta-G solvation = -103.196514 kcal Electronic energy + Delta-G solvation = -21396.991667 eV Core-core repulsion = 18039.065294 eV Total energy + Delta-G solvation = -3357.926373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.33383 -40.51361 -38.48066 -38.14409 -36.66044 -34.37726 -32.36046 -32.09889 -30.39766 -29.42688 -27.34855 -25.78500 -25.18438 -22.89618 -21.99158 -21.18230 -20.05457 -18.97573 -18.38261 -17.92746 -17.24946 -17.01460 -16.51249 -16.12542 -15.95991 -15.63252 -15.58405 -15.20884 -14.82350 -14.78653 -14.40145 -14.02575 -13.65473 -13.12958 -12.99242 -12.87378 -12.84572 -12.72236 -12.26772 -12.17815 -12.13857 -12.03038 -11.66052 -11.12463 -10.71109 -10.56274 -9.90123 -9.58392 -9.13307 -8.16551 -6.34778 -0.20456 0.27713 1.46147 1.49058 1.56758 1.92514 2.08815 2.28162 2.34119 2.56627 2.82594 3.13747 3.27231 3.63113 3.87701 3.92288 3.97515 4.15113 4.25629 4.37371 4.53619 4.57591 4.66219 4.75704 4.90846 5.03964 5.07590 5.08814 5.35750 5.42420 5.59655 5.61648 5.68372 5.87300 5.93761 6.08497 6.37086 6.71912 6.95821 7.32183 7.53945 8.90031 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.004311 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.601709 B = 6493.253589 C = 7115.658794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.699 5.699 13 C 0.538 3.462 14 O -0.583 6.583 15 C -0.159 4.159 16 C -0.081 4.081 17 C -0.111 4.111 18 C -0.084 4.084 19 C 0.026 3.974 20 C 0.081 3.919 21 O -0.310 6.310 22 C 0.003 3.997 23 C 0.022 3.978 24 O -0.312 6.312 25 H 0.007 0.993 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.266 0.734 29 H 0.404 0.596 30 H 0.153 0.847 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.877 -7.164 -19.487 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.186 1.186 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.464 6.464 15 C -0.163 4.163 16 C -0.100 4.100 17 C -0.128 4.128 18 C -0.102 4.102 19 C -0.019 4.019 20 C 0.033 3.967 21 O -0.223 6.223 22 C -0.072 4.072 23 C -0.052 4.052 24 O -0.227 6.227 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.240 0.760 30 H 0.170 0.830 31 H 0.199 0.801 32 H 0.187 0.813 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.564 -6.134 -19.390 21.084 hybrid contribution -0.006 0.234 1.025 1.052 sum 5.557 -5.900 -18.364 20.073 Atomic orbital electron populations 1.21893 0.98270 0.99528 0.99406 1.18363 0.91154 0.91867 0.81778 0.98660 1.21505 1.32784 1.13703 0.90603 0.90597 1.25847 0.94787 0.95570 1.02421 1.70059 1.36973 1.23958 1.24712 0.85335 0.78612 0.78748 0.77258 1.19557 1.21207 1.18583 1.46170 1.65263 1.14117 1.09361 1.18631 0.78173 0.86494 0.84057 1.90723 1.52456 1.17562 1.85678 1.19576 1.09479 0.96171 0.91046 1.21479 0.96525 0.90843 1.01156 1.21280 0.99322 1.02032 0.90203 1.21048 0.99269 0.89256 1.00644 1.19010 1.05088 0.93693 0.84136 1.19222 0.99737 0.84650 0.93058 1.86664 1.69791 1.18155 1.47728 1.24086 1.01458 0.96545 0.85122 1.23896 0.98625 0.83037 0.99682 1.86281 1.69452 1.35542 1.31388 0.97376 0.93875 0.91282 0.92520 0.75977 0.82966 0.80140 0.81272 0.90237 0.84167 0.82045 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 2 C 0.27 14.87 2.56 44.24 0.11 14.98 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -29.72 8.73 25.60 0.22 -29.49 16 5 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.81 11.32 21.45 0.24 -53.56 16 8 Si 0.98 42.32 29.54 68.60 2.03 44.35 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 N -0.70 -31.64 5.02 -449.26 -2.25 -33.90 16 13 C 0.54 24.96 7.73 86.70 0.67 25.63 16 14 O -0.58 -32.36 14.76 17.17 0.25 -32.11 16 15 C -0.16 -5.73 5.89 -20.00 -0.12 -5.85 16 16 C -0.08 -2.09 9.53 22.52 0.21 -1.88 16 17 C -0.11 -2.04 10.02 22.21 0.22 -1.82 16 18 C -0.08 -1.66 9.95 22.41 0.22 -1.44 16 19 C 0.03 0.69 6.49 22.53 0.15 0.83 16 20 C 0.08 2.78 6.50 22.90 0.15 2.93 16 21 O -0.31 -11.44 8.43 -64.48 -0.54 -11.99 16 22 C 0.00 0.06 7.27 72.14 0.52 0.59 16 23 C 0.02 0.39 7.25 72.14 0.52 0.92 16 24 O -0.31 -7.16 10.42 -82.80 -0.86 -8.02 16 25 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.40 15.07 6.56 -92.71 -0.61 14.46 16 30 H 0.15 3.33 6.40 -2.91 -0.02 3.31 16 31 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -78.16 304.93 3.37 -74.78 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.50 Total: 20.23 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 4.01 Total: 0.21 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.01 Total: -87.46 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -1.15 Total: -52.11 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -78.16 3.37 -74.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.413 kcal (2) G-P(sol) polarization free energy of solvation -78.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds