Wall clock time and date at job start Mon Mar 30 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.50702 * 109.47335 * 239.99829 * 2 1 3 5 5 H 1.07993 * 120.00190 * 239.99917 * 4 2 1 6 6 C 1.37882 * 119.99652 * 60.00082 * 4 2 1 7 7 N 1.31515 * 120.00160 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46965 * 59.99812 * 8 6 4 10 10 H 1.48495 * 109.47246 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46845 * 299.99909 * 8 6 4 12 12 N 1.46495 * 109.47138 * 120.00107 * 2 1 3 13 13 C 1.34788 * 119.99950 * 275.00010 * 12 2 1 14 14 O 1.21585 * 119.99400 * 359.97438 * 13 12 2 15 15 C 1.47545 * 119.99872 * 180.02562 * 13 12 2 16 16 C 1.39768 * 120.14267 * 359.97438 * 15 13 12 17 17 C 1.37753 * 119.94934 * 180.02562 * 16 15 13 18 18 C 1.38485 * 120.33055 * 0.08869 * 17 16 15 19 19 C 1.38587 * 120.41133 * 0.20705 * 18 17 16 20 20 C 1.38994 * 119.90826 * 359.39273 * 19 18 17 21 21 O 1.35815 * 120.87227 * 180.66859 * 20 19 18 22 22 C 1.43464 * 116.61081 * 342.24914 * 21 20 19 23 23 C 1.53467 * 108.00880 * 46.70129 * 22 21 20 24 24 O 1.36133 * 119.36827 * 179.48059 * 19 18 17 25 25 H 1.08996 * 109.46980 * 299.99813 * 1 2 3 26 26 H 1.09004 * 109.46934 * 60.00204 * 1 2 3 27 27 H 1.09000 * 109.47316 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99743 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00735 * 95.00039 * 12 2 1 30 30 H 1.07998 * 120.02350 * 0.05914 * 16 15 13 31 31 H 1.07997 * 119.82910 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.79131 * 179.97438 * 18 17 16 33 33 H 1.09002 * 110.10792 * 286.92012 * 22 21 20 34 34 H 1.09002 * 109.58127 * 166.17137 * 22 21 20 35 35 H 1.08998 * 109.71538 * 180.31140 * 23 22 21 36 36 H 1.09005 * 109.74677 * 59.70143 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8259 -2.5202 -4.0077 10 1 1.8260 -0.4206 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1616 2.4116 15 6 2.6394 -0.7136 3.5617 16 6 2.9727 -2.0697 3.5023 17 6 3.4315 -2.7152 4.6294 18 6 3.5631 -2.0276 5.8243 19 6 3.2310 -0.6843 5.9009 20 6 2.7746 -0.0175 4.7699 21 8 2.4565 1.3019 4.8196 22 6 2.2340 1.8607 6.1221 23 6 3.3758 1.3991 7.0377 24 8 3.3585 -0.0317 7.0889 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7082 1.1608 -3.4845 29 1 2.2490 -1.6318 1.1527 30 1 2.8711 -2.6109 2.5732 31 1 3.6888 -3.7629 4.5812 32 1 3.9232 -2.5423 6.7028 33 1 1.2804 1.5144 6.5205 34 1 2.2318 2.9488 6.0573 35 1 3.2310 1.8046 8.0391 36 1 4.3302 1.7411 6.6373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:23 Heat of formation + Delta-G solvation = -80.236782 kcal Electronic energy + Delta-G solvation = -21396.307994 eV Core-core repulsion = 18039.377230 eV Total energy + Delta-G solvation = -3356.930764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27905 -38.93222 -37.36490 -37.00337 -34.69125 -32.45003 -31.21609 -30.91182 -28.63060 -28.37641 -25.22761 -24.75885 -23.88364 -21.16606 -20.98199 -19.47129 -18.79856 -17.58528 -17.31924 -16.49073 -15.65158 -15.46871 -15.15346 -14.96897 -14.68405 -14.33534 -14.17991 -13.90000 -13.69463 -13.25929 -12.83650 -12.36641 -12.16226 -11.86592 -11.62291 -11.20222 -11.14050 -11.05956 -10.91679 -10.70137 -10.61107 -10.28706 -10.19514 -9.01791 -8.96078 -8.62515 -8.50567 -8.08838 -7.81130 -6.08737 -4.17966 0.95985 1.30963 2.94604 3.22241 3.28034 3.33010 3.33861 3.35587 3.96955 4.18559 4.21562 4.39545 4.68462 4.70488 4.79967 4.98840 5.07848 5.17821 5.23378 5.33446 5.39296 5.51986 5.76465 6.03039 6.11831 6.37442 6.55322 6.86017 6.89184 7.02493 7.20006 7.40241 7.51443 7.62186 7.74362 7.96628 8.18976 8.71780 8.82894 9.19546 9.49591 10.97257 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.004313 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.819115 B = 6490.080032 C = 7118.321672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.543 3.457 14 O -0.531 6.531 15 C -0.122 4.122 16 C -0.084 4.084 17 C -0.127 4.127 18 C -0.098 4.098 19 C 0.033 3.967 20 C 0.103 3.897 21 O -0.266 6.266 22 C 0.014 3.986 23 C 0.020 3.980 24 O -0.309 6.309 25 H 0.015 0.985 26 H 0.090 0.910 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -4.181 18.023 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.328 3.672 14 O -0.409 6.409 15 C -0.126 4.126 16 C -0.103 4.103 17 C -0.145 4.145 18 C -0.117 4.117 19 C -0.012 4.012 20 C 0.056 3.944 21 O -0.178 6.178 22 C -0.062 4.062 23 C -0.056 4.056 24 O -0.224 6.224 25 H 0.034 0.966 26 H 0.109 0.891 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.220 0.780 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.125 -3.111 17.891 18.622 hybrid contribution 0.400 -0.745 -0.704 1.100 sum 4.525 -3.856 17.188 18.187 Atomic orbital electron populations 1.22075 0.98445 0.99107 1.00894 1.18744 0.91024 0.94030 0.79802 0.93290 1.21182 1.32466 1.13228 0.90324 0.92115 1.24885 0.94819 0.94955 0.99015 1.69899 1.35812 1.22461 1.23934 0.86504 0.79162 0.79578 0.81817 1.20162 1.21156 1.20179 1.46460 1.65158 1.13459 1.10274 1.17916 0.79423 0.86896 0.83008 1.90769 1.50346 1.15148 1.84665 1.19806 1.05516 0.93766 0.93513 1.21236 0.97311 0.92445 0.99283 1.20801 1.01772 1.00276 0.91662 1.20502 1.00896 0.91273 0.99026 1.18781 1.03678 0.93478 0.85230 1.18951 0.97497 0.84731 0.93270 1.86746 1.83808 1.19291 1.27948 1.23740 0.98244 1.01021 0.83201 1.23651 0.99669 0.79501 1.02783 1.86291 1.89630 1.19731 1.26716 0.96631 0.89144 0.95478 0.92548 0.77998 0.84417 0.84644 0.84777 0.90463 0.85994 0.86198 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.27 6.96 2.56 -69.08 -0.18 6.79 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.70 -15.47 5.02 -55.97 -0.28 -15.75 16 13 C 0.54 11.97 7.73 -12.46 -0.10 11.88 16 14 O -0.53 -13.72 14.76 -16.86 -0.25 -13.97 16 15 C -0.12 -2.17 5.89 -104.84 -0.62 -2.79 16 16 C -0.08 -1.16 9.53 -39.19 -0.37 -1.54 16 17 C -0.13 -1.44 10.02 -39.67 -0.40 -1.84 16 18 C -0.10 -1.17 9.95 -39.36 -0.39 -1.56 16 19 C 0.03 0.47 6.49 -39.17 -0.25 0.22 16 20 C 0.10 1.75 6.50 -38.61 -0.25 1.50 16 21 O -0.27 -4.67 8.43 -47.39 -0.40 -5.07 16 22 C 0.01 0.16 7.27 37.40 0.27 0.43 16 23 C 0.02 0.19 7.25 37.40 0.27 0.46 16 24 O -0.31 -3.90 10.42 -32.98 -0.34 -4.24 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.39 7.24 6.56 -40.82 -0.27 6.97 16 30 H 0.14 1.67 6.40 -52.49 -0.34 1.33 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 304.92 15.07 4.60 4.60 Total: -1.00 -33.64 304.92 -7.37 -41.02 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.24 Total: 5.00 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.07 Total: -2.78 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.35 Total: -40.29 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.99 Total: -23.28 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.64 -7.37 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.221 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds