Wall clock time and date at job start Mon Mar 30 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.50702 * 109.47335 * 239.99829 * 2 1 3 5 5 H 1.07993 * 120.00190 * 239.99917 * 4 2 1 6 6 C 1.37882 * 119.99652 * 60.00082 * 4 2 1 7 7 N 1.31515 * 120.00160 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46965 * 59.99812 * 8 6 4 10 10 H 1.48495 * 109.47246 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46845 * 299.99909 * 8 6 4 12 12 N 1.46495 * 109.47138 * 120.00107 * 2 1 3 13 13 C 1.34788 * 119.99950 * 275.00010 * 12 2 1 14 14 O 1.21585 * 119.99400 * 359.97438 * 13 12 2 15 15 C 1.47545 * 119.99872 * 180.02562 * 13 12 2 16 16 C 1.39768 * 120.14267 * 359.97438 * 15 13 12 17 17 C 1.37753 * 119.94934 * 180.02562 * 16 15 13 18 18 C 1.38485 * 120.33055 * 0.08869 * 17 16 15 19 19 C 1.38587 * 120.41133 * 0.20705 * 18 17 16 20 20 C 1.38994 * 119.90826 * 359.39273 * 19 18 17 21 21 O 1.35815 * 120.87227 * 180.66859 * 20 19 18 22 22 C 1.43464 * 116.61081 * 342.24914 * 21 20 19 23 23 C 1.53467 * 108.00880 * 46.70129 * 22 21 20 24 24 O 1.36133 * 119.36827 * 179.48059 * 19 18 17 25 25 H 1.08996 * 109.46980 * 299.99813 * 1 2 3 26 26 H 1.09004 * 109.46934 * 60.00204 * 1 2 3 27 27 H 1.09000 * 109.47316 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99743 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00735 * 95.00039 * 12 2 1 30 30 H 1.07998 * 120.02350 * 0.05914 * 16 15 13 31 31 H 1.07997 * 119.82910 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.79131 * 179.97438 * 18 17 16 33 33 H 1.09002 * 110.10792 * 286.92012 * 22 21 20 34 34 H 1.09002 * 109.58127 * 166.17137 * 22 21 20 35 35 H 1.08998 * 109.71538 * 180.31140 * 23 22 21 36 36 H 1.09005 * 109.74677 * 59.70143 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8259 -2.5202 -4.0077 10 1 1.8260 -0.4206 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1616 2.4116 15 6 2.6394 -0.7136 3.5617 16 6 2.9727 -2.0697 3.5023 17 6 3.4315 -2.7152 4.6294 18 6 3.5631 -2.0276 5.8243 19 6 3.2310 -0.6843 5.9009 20 6 2.7746 -0.0175 4.7699 21 8 2.4565 1.3019 4.8196 22 6 2.2340 1.8607 6.1221 23 6 3.3758 1.3991 7.0377 24 8 3.3585 -0.0317 7.0889 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7082 1.1608 -3.4845 29 1 2.2490 -1.6318 1.1527 30 1 2.8711 -2.6109 2.5732 31 1 3.6888 -3.7629 4.5812 32 1 3.9232 -2.5423 6.7028 33 1 1.2804 1.5144 6.5205 34 1 2.2318 2.9488 6.0573 35 1 3.2310 1.8046 8.0391 36 1 4.3302 1.7411 6.6373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:22 Heat of formation + Delta-G solvation = -103.185674 kcal Electronic energy + Delta-G solvation = -21397.303133 eV Core-core repulsion = 18039.377230 eV Total energy + Delta-G solvation = -3357.925903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.33381 -40.51394 -38.48062 -38.14408 -36.66117 -34.37637 -32.36042 -32.09878 -30.39685 -29.42699 -27.34924 -25.78502 -25.18419 -22.89480 -21.99130 -21.18427 -20.05479 -18.97627 -18.37237 -17.92688 -17.26599 -17.01946 -16.50494 -16.06740 -16.04086 -15.62384 -15.52047 -15.22425 -14.83680 -14.81694 -14.43470 -13.92415 -13.70950 -13.12743 -12.98420 -12.92601 -12.79556 -12.72564 -12.27666 -12.17156 -12.14282 -12.02491 -11.66308 -11.12466 -10.71194 -10.56308 -9.89753 -9.58563 -9.13303 -8.16525 -6.34755 -0.20433 0.27727 1.46180 1.49084 1.56786 1.92644 2.08427 2.28166 2.34573 2.56412 2.82594 3.13757 3.27289 3.63156 3.87698 3.92283 3.97502 4.15106 4.25617 4.37392 4.53627 4.57610 4.66205 4.75662 4.90705 5.03956 5.07605 5.08731 5.35755 5.42408 5.59694 5.61648 5.68357 5.87370 5.93754 6.08508 6.37092 6.71928 6.95812 7.32214 7.53965 8.90022 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.004313 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.819115 B = 6490.080032 C = 7118.321672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.261 1.261 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.699 5.699 13 C 0.538 3.462 14 O -0.582 6.582 15 C -0.159 4.159 16 C -0.081 4.081 17 C -0.111 4.111 18 C -0.084 4.084 19 C 0.026 3.974 20 C 0.081 3.919 21 O -0.310 6.310 22 C 0.003 3.997 23 C 0.022 3.978 24 O -0.312 6.312 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.404 0.596 30 H 0.153 0.847 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -7.161 19.490 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.186 1.186 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.464 6.464 15 C -0.163 4.163 16 C -0.100 4.100 17 C -0.128 4.128 18 C -0.102 4.102 19 C -0.019 4.019 20 C 0.033 3.967 21 O -0.223 6.223 22 C -0.072 4.072 23 C -0.053 4.053 24 O -0.227 6.227 25 H 0.026 0.974 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.240 0.760 30 H 0.170 0.830 31 H 0.199 0.801 32 H 0.187 0.813 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.561 -6.131 19.392 21.085 hybrid contribution -0.027 0.228 -1.020 1.045 sum 5.534 -5.903 18.372 20.075 Atomic orbital electron populations 1.21892 0.98265 0.99527 0.99409 1.18363 0.91158 0.91865 0.81781 0.98669 1.21503 1.32786 1.13697 0.90603 0.90598 1.25848 0.94789 0.95568 1.02420 1.70062 1.36933 1.24005 1.24704 0.85335 0.78615 0.78744 0.77260 1.18595 1.21203 1.19548 1.46172 1.65283 1.14134 1.09330 1.18632 0.78187 0.86483 0.84050 1.90721 1.52541 1.17529 1.85617 1.19577 1.09197 0.95543 0.91960 1.21479 0.96649 0.90736 1.01136 1.21280 0.99407 1.02023 0.90129 1.21048 0.98513 0.90201 1.00452 1.19010 1.03661 0.94442 0.84821 1.19222 0.98500 0.84835 0.94101 1.86666 1.84179 1.20139 1.31364 1.24085 0.99354 1.02026 0.81730 1.23894 0.98705 0.78162 1.04507 1.86281 1.89444 1.21095 1.25830 0.97373 0.91279 0.93875 0.92521 0.75978 0.82967 0.80140 0.81271 0.90148 0.84191 0.82025 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.05 9.26 71.98 0.67 -6.38 16 2 C 0.27 14.87 2.56 44.25 0.11 14.98 16 3 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 4 C -0.55 -29.72 8.73 25.60 0.22 -29.50 16 5 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.81 11.32 21.45 0.24 -53.57 16 8 Si 0.98 42.33 29.54 68.60 2.03 44.36 16 9 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 N -0.70 -31.65 5.02 -449.26 -2.25 -33.90 16 13 C 0.54 24.96 7.73 86.70 0.67 25.63 16 14 O -0.58 -32.35 14.76 17.20 0.25 -32.10 16 15 C -0.16 -5.74 5.89 -20.00 -0.12 -5.85 16 16 C -0.08 -2.09 9.53 22.52 0.21 -1.88 16 17 C -0.11 -2.04 10.02 22.21 0.22 -1.82 16 18 C -0.08 -1.66 9.95 22.41 0.22 -1.44 16 19 C 0.03 0.68 6.49 22.53 0.15 0.83 16 20 C 0.08 2.79 6.50 22.90 0.15 2.93 16 21 O -0.31 -11.45 8.43 -64.48 -0.54 -11.99 16 22 C 0.00 0.07 7.27 72.14 0.52 0.59 16 23 C 0.02 0.39 7.25 72.14 0.52 0.91 16 24 O -0.31 -7.16 10.42 -82.80 -0.86 -8.02 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.07 3.97 6.07 -2.38 -0.01 3.96 16 27 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.40 15.07 6.56 -92.71 -0.61 14.46 16 30 H 0.15 3.33 6.40 -2.91 -0.02 3.31 16 31 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -78.17 304.92 3.37 -74.79 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.50 Total: 20.21 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 4.01 Total: 0.22 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -2.01 Total: -87.47 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -1.15 Total: -52.11 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -78.17 3.37 -74.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.393 kcal (2) G-P(sol) polarization free energy of solvation -78.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds