Wall clock time and date at job start Mon Mar 30 2020 01:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.50696 * 109.47149 * 239.99505 * 2 1 3 5 5 H 1.07998 * 120.00244 * 240.00366 * 4 2 1 6 6 C 1.37878 * 120.00085 * 60.00226 * 4 2 1 7 7 N 1.31516 * 119.99960 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00340 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47191 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47180 * 120.00274 * 8 6 4 11 11 H 1.48505 * 109.47236 * 240.00739 * 8 6 4 12 12 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 13 13 C 1.34773 * 120.00095 * 275.00010 * 12 2 1 14 14 O 1.21593 * 119.99894 * 359.97438 * 13 12 2 15 15 C 1.47602 * 120.00232 * 179.72721 * 13 12 2 16 16 C 1.39700 * 120.09686 * 359.97438 * 15 13 12 17 17 C 1.37730 * 119.96720 * 179.81851 * 16 15 13 18 18 C 1.39009 * 120.26538 * 0.52842 * 17 16 15 19 19 C 1.39261 * 120.04908 * 359.63978 * 18 17 16 20 20 C 1.38287 * 119.95656 * 0.12262 * 19 18 17 21 21 O 1.36142 * 120.76008 * 180.26523 * 19 18 17 22 22 C 1.43164 * 116.71416 * 342.86135 * 21 19 18 23 23 C 1.53467 * 108.23628 * 46.14147 * 22 21 19 24 24 O 1.35969 * 119.23486 * 179.55823 * 18 17 16 25 25 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 26 26 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 28 28 H 0.97000 * 120.00330 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99792 * 94.99575 * 12 2 1 30 30 H 1.07998 * 120.02267 * 0.05194 * 16 15 13 31 31 H 1.08001 * 119.86714 * 180.23866 * 17 16 15 32 32 H 1.08004 * 120.01715 * 179.97438 * 20 19 18 33 33 H 1.08997 * 109.71554 * 165.82806 * 22 21 19 34 34 H 1.08998 * 109.71385 * 286.45641 * 22 21 19 35 35 H 1.09001 * 109.71037 * 59.87022 * 23 22 21 36 36 H 1.08999 * 109.71168 * 180.49848 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3226 -1.1198 -4.0079 9 1 3.1475 -2.2866 -3.6037 10 1 1.1679 -1.5868 -4.8164 11 1 3.1475 -0.1861 -4.8160 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0183 2.3572 14 8 1.8583 1.1616 2.4116 15 6 2.6332 -0.7155 3.5639 16 6 2.9600 -2.0725 3.5051 17 6 3.4170 -2.7195 4.6318 18 6 3.5444 -2.0304 5.8323 19 6 3.2170 -0.6785 5.8984 20 6 2.7622 -0.0221 4.7694 21 8 3.3414 0.0118 7.0653 22 6 3.4468 -0.7640 8.2639 23 6 4.4621 -1.8887 8.0202 24 8 3.9890 -2.6920 6.9338 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8898 28 1 0.7091 1.1612 -3.4845 29 1 2.2489 -1.6318 1.1527 30 1 2.8581 -2.6131 2.5757 31 1 3.6729 -3.7677 4.5835 32 1 2.5076 1.0263 4.8197 33 1 3.7888 -0.1311 9.0827 34 1 2.4756 -1.1927 8.5110 35 1 5.4314 -1.4601 7.7655 36 1 4.5547 -2.5011 8.9172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:19 Heat of formation + Delta-G solvation = -107.018606 kcal Electronic energy + Delta-G solvation = -20893.440313 eV Core-core repulsion = 17535.348202 eV Total energy + Delta-G solvation = -3358.092111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.32756 -40.77767 -38.34688 -38.30523 -36.73682 -34.40533 -32.48428 -31.81311 -30.90463 -29.30951 -27.34029 -26.10792 -24.55124 -23.20776 -22.33784 -21.04598 -20.05750 -19.10747 -18.30131 -18.16252 -17.30577 -16.95685 -16.50023 -16.27298 -15.94679 -15.80283 -15.41957 -14.99307 -14.90478 -14.87404 -14.41972 -14.25892 -13.80860 -13.47384 -12.99340 -12.89091 -12.85249 -12.74049 -12.27833 -12.19444 -12.09891 -12.00807 -11.52900 -11.09555 -10.91407 -10.59916 -9.89500 -9.73386 -9.19569 -8.16553 -6.34309 -0.27191 0.19898 1.46715 1.47441 1.59856 1.76880 2.01240 2.14082 2.38260 2.62974 2.76747 3.14329 3.20294 3.60340 3.81615 3.94802 4.03343 4.09434 4.14704 4.30662 4.54428 4.59558 4.72145 4.75596 4.92182 4.98782 5.00556 5.09225 5.23852 5.38576 5.43568 5.59614 5.68581 5.82120 5.90742 6.08997 6.30944 6.72722 6.90418 7.31252 7.48381 8.90368 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038618 B = 0.003594 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.870163 B = 7789.194989 C = 8282.603581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.694 5.694 13 C 0.543 3.457 14 O -0.599 6.599 15 C -0.139 4.139 16 C -0.072 4.072 17 C -0.113 4.113 18 C 0.074 3.926 19 C 0.036 3.964 20 C -0.074 4.074 21 O -0.325 6.325 22 C 0.011 3.989 23 C 0.014 3.986 24 O -0.310 6.310 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.010 0.990 28 H 0.266 0.734 29 H 0.406 0.594 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.126 0.874 33 H 0.155 0.845 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.182 -10.855 21.111 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.343 5.343 13 C 0.332 3.668 14 O -0.482 6.482 15 C -0.142 4.142 16 C -0.090 4.090 17 C -0.132 4.132 18 C 0.028 3.972 19 C -0.009 4.009 20 C -0.093 4.093 21 O -0.241 6.241 22 C -0.064 4.064 23 C -0.060 4.060 24 O -0.225 6.225 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.243 0.757 30 H 0.177 0.823 31 H 0.190 0.810 32 H 0.144 0.856 33 H 0.173 0.827 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.910 -9.930 21.052 24.281 hybrid contribution 0.073 0.063 -0.803 0.809 sum 6.984 -9.868 20.249 23.583 Atomic orbital electron populations 1.21911 0.98133 0.99694 0.99615 1.18426 0.91277 0.92045 0.81685 0.98255 1.21572 1.32632 1.13653 0.90569 0.90480 1.25833 0.94840 0.95580 1.02418 1.70067 1.37048 1.23980 1.24599 0.85247 0.78075 0.78521 0.78183 1.18097 1.20421 1.21090 1.46175 1.64529 1.14260 1.09334 1.18653 0.77738 0.86276 0.84159 1.90704 1.53618 1.17933 1.85986 1.19621 1.06456 0.95439 0.92692 1.21326 0.96090 0.91845 0.99777 1.20657 1.02161 1.02164 0.88181 1.19256 0.98675 0.90093 0.89204 1.18644 1.03557 0.91116 0.87606 1.20383 0.98213 1.00709 0.90044 1.86324 1.89257 1.35130 1.13353 1.24048 1.01004 0.95532 0.85788 1.24039 0.96997 0.94641 0.90351 1.86270 1.77625 1.34853 1.23704 0.91278 0.93762 0.97051 0.92527 0.75708 0.82295 0.80995 0.85575 0.82734 0.89945 0.89905 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.00 9.26 71.98 0.67 -6.33 16 2 C 0.27 14.30 2.56 44.24 0.11 14.41 16 3 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 4 C -0.55 -29.03 8.73 25.60 0.22 -28.81 16 5 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.12 11.32 21.45 0.24 -52.87 16 8 Si 0.98 41.92 29.54 68.60 2.03 43.94 16 9 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.69 -30.06 5.02 -449.19 -2.25 -32.31 16 13 C 0.54 23.85 7.73 86.72 0.67 24.52 16 14 O -0.60 -31.79 16.00 -4.01 -0.06 -31.86 16 15 C -0.14 -4.73 5.87 -20.11 -0.12 -4.85 16 16 C -0.07 -1.83 9.53 22.50 0.21 -1.62 16 17 C -0.11 -2.45 9.94 22.33 0.22 -2.23 16 18 C 0.07 1.75 6.50 22.70 0.15 1.90 16 19 C 0.04 0.99 6.49 22.53 0.15 1.14 16 20 C -0.07 -2.46 9.50 22.63 0.21 -2.24 16 21 O -0.33 -7.90 10.41 -82.98 -0.86 -8.76 16 22 C 0.01 0.14 7.26 72.14 0.52 0.66 16 23 C 0.01 0.16 7.26 72.14 0.52 0.68 16 24 O -0.31 -5.86 10.41 -81.00 -0.84 -6.71 16 25 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 26 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.41 14.38 6.56 -92.71 -0.61 13.78 16 30 H 0.16 3.33 6.39 -2.91 -0.02 3.31 16 31 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.13 4.62 7.64 -2.91 -0.02 4.59 16 33 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -73.79 307.15 2.75 -71.04 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.51 Total: 19.14 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 4.00 Total: -1.61 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -2.01 Total: -85.19 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.77 Total: -47.33 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -73.79 2.75 -71.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.980 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds