Wall clock time and date at job start Mon Mar 30 2020 02:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46491 * 120.00268 * 2 1 4 4 C 1.34778 * 119.99429 * 180.02562 * 2 1 3 5 5 O 1.21281 * 120.00414 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99791 * 179.97438 * 4 2 1 7 7 O 1.45202 * 109.47251 * 180.02562 * 6 4 2 8 8 C 1.34708 * 116.99988 * 180.02562 * 7 6 4 9 9 O 1.21465 * 120.00087 * 359.97438 * 8 7 6 10 10 C 1.47771 * 119.99877 * 179.97438 * 8 7 6 11 11 C 1.39966 * 120.02752 * 359.97438 * 10 8 7 12 12 C 1.38311 * 120.35000 * 180.02562 * 11 10 8 13 13 C 1.37761 * 120.42100 * 359.97438 * 12 11 10 14 14 C 1.40756 * 120.05029 * 0.02562 * 13 12 11 15 15 C 1.41434 * 120.18092 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99456 * 24.42404 * 15 14 13 17 17 C 1.39932 * 120.00288 * 204.42465 * 15 14 13 18 18 N 1.30824 * 120.00201 * 17.83811 * 17 15 14 19 19 Si 1.86806 * 119.99927 * 197.83727 * 17 15 14 20 20 H 1.48493 * 109.47137 * 90.00133 * 19 17 15 21 21 H 1.48497 * 109.46825 * 210.00040 * 19 17 15 22 22 H 1.48496 * 109.47026 * 330.00010 * 19 17 15 23 23 C 1.39043 * 120.02867 * 179.97438 * 10 8 7 24 24 H 1.08998 * 109.47229 * 269.99891 * 1 2 3 25 25 H 1.09002 * 109.46789 * 29.99578 * 1 2 3 26 26 H 1.08997 * 109.47740 * 149.99755 * 1 2 3 27 27 H 1.09004 * 109.47623 * 239.99950 * 3 2 1 28 28 H 1.08998 * 109.47427 * 0.02562 * 3 2 1 29 29 H 1.09010 * 109.46812 * 120.00173 * 3 2 1 30 30 H 1.09004 * 109.46727 * 60.00197 * 6 4 2 31 31 H 1.08996 * 109.47263 * 300.00381 * 6 4 2 32 32 H 1.07996 * 119.82893 * 0.02562 * 11 10 8 33 33 H 1.08008 * 119.79362 * 180.02562 * 12 11 10 34 34 H 1.08000 * 119.97658 * 179.97438 * 13 12 11 35 35 H 0.96997 * 120.00007 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.21032 * 359.70694 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5323 -2.2176 -0.0015 6 6 3.6458 -1.1674 -0.0011 7 8 4.1297 -2.5364 -0.0022 8 6 5.4652 -2.7129 -0.0023 9 8 6.2051 -1.7497 -0.0020 10 6 6.0299 -4.0785 -0.0028 11 6 5.1778 -5.1888 -0.0027 12 6 5.6991 -6.4699 -0.0027 13 6 7.0624 -6.6682 -0.0033 14 6 7.9353 -5.5640 -0.0034 15 6 9.3354 -5.7644 -0.0035 16 1 9.7491 -6.6840 -0.3903 17 6 10.1844 -4.7712 0.4974 18 7 9.7060 -3.8306 1.2706 19 14 12.0009 -4.7886 0.0621 20 1 12.2203 -4.0018 -1.1780 21 1 12.7820 -4.1887 1.1735 22 1 12.4445 -6.1890 -0.1552 23 6 7.4083 -4.2614 -0.0035 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 2.8242 1.3264 -0.8900 28 1 1.4893 2.0972 0.0005 29 1 2.8242 1.3263 0.8901 30 1 4.0094 -0.6538 0.8889 31 1 4.0088 -0.6533 -0.8910 32 1 4.1075 -5.0446 -0.0026 33 1 5.0333 -7.3203 -0.0030 34 1 7.4617 -7.6716 -0.0028 35 1 10.2946 -3.1424 1.6181 36 1 8.0698 -3.4077 -0.0084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051534891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:36 Heat of formation + Delta-G solvation = -96.918742 kcal Electronic energy + Delta-G solvation = -20616.791024 eV Core-core repulsion = 17259.136876 eV Total energy + Delta-G solvation = -3357.654148 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28251 -39.35966 -37.35287 -35.90123 -35.54372 -33.75111 -30.62996 -29.66419 -29.45402 -27.72303 -25.77159 -25.26712 -22.99759 -20.98814 -19.87864 -19.64887 -17.98173 -16.94995 -16.82387 -16.64606 -15.98063 -15.62629 -15.38966 -14.88743 -14.57578 -13.68449 -13.57656 -13.35607 -13.05394 -13.03553 -12.93729 -12.63081 -12.48203 -12.31910 -12.08835 -11.67819 -11.21064 -11.12507 -10.75046 -10.52989 -10.42941 -10.24460 -9.94685 -9.71144 -9.51605 -9.24857 -8.97463 -7.74973 -7.55136 -6.83076 -4.43646 1.94512 2.39593 2.43486 2.78236 3.06339 3.09609 3.13808 3.39814 3.55930 3.89994 4.31068 4.57322 4.74013 4.94158 5.01813 5.07603 5.12482 5.33557 5.37139 5.54299 5.54988 5.59510 6.12648 6.16276 6.46184 6.58678 6.84372 6.93684 6.97219 7.00943 7.16880 7.31223 7.69063 7.76084 7.90853 7.96704 8.10106 8.43798 8.47812 8.76773 8.78974 10.12423 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.003822 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.109388 B = 7324.093221 C = 8197.255316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.625 5.625 3 C 0.074 3.926 4 C 0.516 3.484 5 O -0.511 6.511 6 C 0.050 3.950 7 O -0.332 6.332 8 C 0.514 3.486 9 O -0.518 6.518 10 C -0.115 4.115 11 C -0.190 4.190 12 C -0.104 4.104 13 C -0.199 4.199 14 C 0.094 3.906 15 C -0.461 4.461 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.788 5.788 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.088 4.088 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.284 0.716 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.987 10.036 -1.792 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.362 5.362 3 C -0.069 4.069 4 C 0.303 3.697 5 O -0.385 6.385 6 C -0.028 4.028 7 O -0.249 6.249 8 C 0.361 3.639 9 O -0.408 6.408 10 C -0.117 4.117 11 C -0.209 4.209 12 C -0.122 4.122 13 C -0.219 4.219 14 C 0.092 3.908 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.412 5.412 19 Si 0.736 3.264 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.107 4.107 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.039 9.971 -1.638 14.965 hybrid contribution 0.816 0.468 -0.020 0.941 sum -10.222 10.439 -1.658 14.704 Atomic orbital electron populations 1.21674 0.78557 1.03254 1.01992 1.47644 1.07250 1.06090 1.75212 1.21902 0.97493 0.85075 1.02425 1.20225 0.89261 0.83595 0.76624 1.90748 1.69812 1.30654 1.47314 1.22530 0.91324 0.84339 1.04596 1.86693 1.25527 1.27636 1.85036 1.22007 0.78873 0.91316 0.71658 1.90758 1.60041 1.42741 1.47237 1.18782 0.94440 0.87403 1.11031 1.20656 0.97804 0.91879 1.10597 1.20527 0.95018 0.95451 1.01223 1.21208 0.92744 0.97799 1.10152 1.17535 0.93500 0.90296 0.89462 1.19567 0.90602 1.02668 1.36119 0.89924 1.25960 1.01775 0.94253 0.92565 1.69781 1.38379 1.11332 1.21755 0.86249 0.81329 0.79695 0.79118 1.19166 1.20246 1.18554 1.21642 0.91098 0.98894 0.99103 0.92624 0.91081 0.90358 0.91627 0.90036 0.91602 0.88451 0.88500 0.87509 0.88427 0.88287 0.90459 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.41 59.85 0.62 1.35 16 2 N -0.62 -6.51 3.27 -189.52 -0.62 -7.13 16 3 C 0.07 0.49 9.74 59.84 0.58 1.07 16 4 C 0.52 7.60 7.75 -10.98 -0.09 7.52 16 5 O -0.51 -9.63 16.08 -14.10 -0.23 -9.86 16 6 C 0.05 0.76 4.77 36.01 0.17 0.93 16 7 O -0.33 -6.72 8.99 -47.19 -0.42 -7.15 16 8 C 0.51 11.71 7.90 34.63 0.27 11.99 16 9 O -0.52 -12.32 16.12 -19.24 -0.31 -12.63 16 10 C -0.12 -2.84 5.87 -105.05 -0.62 -3.46 16 11 C -0.19 -4.38 9.62 -38.91 -0.37 -4.75 16 12 C -0.10 -2.31 10.01 -39.73 -0.40 -2.71 16 13 C -0.20 -4.76 9.78 -38.80 -0.38 -5.14 16 14 C 0.09 2.49 5.57 -106.87 -0.60 1.90 16 15 C -0.46 -11.97 9.05 -37.73 -0.34 -12.32 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 17 C 0.07 1.82 5.14 -17.35 -0.09 1.74 16 18 N -0.79 -20.54 10.96 55.55 0.61 -19.93 16 19 Si 0.91 18.53 29.60 -169.99 -5.03 13.50 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.09 -2.34 8.23 -38.43 -0.32 -2.66 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 26 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 27 H 0.07 0.40 7.85 -51.93 -0.41 -0.01 16 28 H 0.08 0.34 7.79 -51.93 -0.40 -0.07 16 29 H 0.07 0.41 7.85 -51.92 -0.41 0.00 16 30 H 0.10 1.32 7.86 -51.93 -0.41 0.91 16 31 H 0.10 1.28 7.86 -51.93 -0.41 0.87 16 32 H 0.11 2.32 7.59 -52.49 -0.40 1.93 16 33 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 35 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 36 H 0.14 3.81 5.75 -52.49 -0.30 3.51 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -31.99 318.54 -7.10 -39.09 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.35 Total: 3.86 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.54 Total: -4.55 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: -0.01 Total: -27.06 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.96 Total: -29.64 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.99 -7.10 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051534891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.828 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds