Wall clock time and date at job start Mon Mar 30 2020 02:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46491 * 120.00268 * 2 1 4 4 C 1.34778 * 119.99429 * 180.02562 * 2 1 3 5 5 O 1.21281 * 120.00414 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99791 * 179.97438 * 4 2 1 7 7 O 1.45202 * 109.47251 * 180.02562 * 6 4 2 8 8 C 1.34708 * 116.99988 * 180.02562 * 7 6 4 9 9 O 1.21465 * 120.00087 * 359.97438 * 8 7 6 10 10 C 1.47771 * 119.99877 * 179.97438 * 8 7 6 11 11 C 1.39966 * 120.02752 * 359.97438 * 10 8 7 12 12 C 1.38311 * 120.35000 * 180.02562 * 11 10 8 13 13 C 1.37761 * 120.42100 * 359.97438 * 12 11 10 14 14 C 1.40756 * 120.05029 * 0.02562 * 13 12 11 15 15 C 1.41434 * 120.18092 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99456 * 24.42404 * 15 14 13 17 17 C 1.39932 * 120.00288 * 204.42465 * 15 14 13 18 18 N 1.30824 * 120.00201 * 17.83811 * 17 15 14 19 19 Si 1.86806 * 119.99927 * 197.83727 * 17 15 14 20 20 H 1.48493 * 109.47137 * 90.00133 * 19 17 15 21 21 H 1.48497 * 109.46825 * 210.00040 * 19 17 15 22 22 H 1.48496 * 109.47026 * 330.00010 * 19 17 15 23 23 C 1.39043 * 120.02867 * 179.97438 * 10 8 7 24 24 H 1.08998 * 109.47229 * 269.99891 * 1 2 3 25 25 H 1.09002 * 109.46789 * 29.99578 * 1 2 3 26 26 H 1.08997 * 109.47740 * 149.99755 * 1 2 3 27 27 H 1.09004 * 109.47623 * 239.99950 * 3 2 1 28 28 H 1.08998 * 109.47427 * 0.02562 * 3 2 1 29 29 H 1.09010 * 109.46812 * 120.00173 * 3 2 1 30 30 H 1.09004 * 109.46727 * 60.00197 * 6 4 2 31 31 H 1.08996 * 109.47263 * 300.00381 * 6 4 2 32 32 H 1.07996 * 119.82893 * 0.02562 * 11 10 8 33 33 H 1.08008 * 119.79362 * 180.02562 * 12 11 10 34 34 H 1.08000 * 119.97658 * 179.97438 * 13 12 11 35 35 H 0.96997 * 120.00007 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.21032 * 359.70694 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5323 -2.2176 -0.0015 6 6 3.6458 -1.1674 -0.0011 7 8 4.1297 -2.5364 -0.0022 8 6 5.4652 -2.7129 -0.0023 9 8 6.2051 -1.7497 -0.0020 10 6 6.0299 -4.0785 -0.0028 11 6 5.1778 -5.1888 -0.0027 12 6 5.6991 -6.4699 -0.0027 13 6 7.0624 -6.6682 -0.0033 14 6 7.9353 -5.5640 -0.0034 15 6 9.3354 -5.7644 -0.0035 16 1 9.7491 -6.6840 -0.3903 17 6 10.1844 -4.7712 0.4974 18 7 9.7060 -3.8306 1.2706 19 14 12.0009 -4.7886 0.0621 20 1 12.2203 -4.0018 -1.1780 21 1 12.7820 -4.1887 1.1735 22 1 12.4445 -6.1890 -0.1552 23 6 7.4083 -4.2614 -0.0035 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 2.8242 1.3264 -0.8900 28 1 1.4893 2.0972 0.0005 29 1 2.8242 1.3263 0.8901 30 1 4.0094 -0.6538 0.8889 31 1 4.0088 -0.6533 -0.8910 32 1 4.1075 -5.0446 -0.0026 33 1 5.0333 -7.3203 -0.0030 34 1 7.4617 -7.6716 -0.0028 35 1 10.2946 -3.1424 1.6181 36 1 8.0698 -3.4077 -0.0084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051534891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:35 Heat of formation + Delta-G solvation = -115.375945 kcal Electronic energy + Delta-G solvation = -20617.591389 eV Core-core repulsion = 17259.136876 eV Total energy + Delta-G solvation = -3358.454513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74764 -40.70961 -39.17784 -37.44108 -36.66079 -35.62723 -32.38676 -31.40384 -30.78105 -28.51191 -27.31163 -26.59095 -24.69512 -22.87387 -21.61915 -20.69281 -19.73106 -18.38411 -18.20437 -17.92073 -17.49175 -17.07818 -16.60449 -16.55593 -16.29766 -15.22509 -15.07013 -14.74652 -14.52664 -14.36598 -13.94581 -13.75017 -13.56006 -13.51950 -13.42658 -13.00587 -12.85912 -12.83375 -12.57749 -12.22309 -12.06289 -11.93477 -11.56266 -11.40503 -11.09820 -11.06383 -9.82600 -9.64464 -9.46638 -8.68746 -6.40010 0.08056 0.95229 1.18578 1.31067 1.39513 1.46789 1.53828 1.75266 2.19109 2.20515 2.71035 3.28196 3.61255 3.83979 3.92087 3.98485 4.23978 4.38481 4.41533 4.47010 4.61336 4.71669 4.79816 4.88734 4.90360 5.03518 5.09686 5.11374 5.27388 5.39965 5.42833 5.79051 5.88123 5.99541 6.07863 6.20710 6.51537 6.71146 6.85274 6.87097 6.91789 8.29082 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.003822 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.109388 B = 7324.093221 C = 8197.255316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.613 5.613 3 C 0.063 3.937 4 C 0.513 3.487 5 O -0.564 6.564 6 C 0.042 3.958 7 O -0.340 6.340 8 C 0.520 3.480 9 O -0.535 6.535 10 C -0.128 4.128 11 C -0.186 4.186 12 C -0.098 4.098 13 C -0.203 4.203 14 C 0.067 3.933 15 C -0.492 4.492 16 H 0.088 0.912 17 C 0.031 3.969 18 N -0.824 5.824 19 Si 0.986 3.014 20 H -0.265 1.265 21 H -0.269 1.269 22 H -0.252 1.252 23 C -0.118 4.118 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.289 0.711 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.631 10.825 -2.066 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.348 5.348 3 C -0.078 4.078 4 C 0.301 3.699 5 O -0.443 6.443 6 C -0.034 4.034 7 O -0.256 6.256 8 C 0.367 3.633 9 O -0.426 6.426 10 C -0.130 4.130 11 C -0.206 4.206 12 C -0.116 4.116 13 C -0.223 4.223 14 C 0.065 3.935 15 C -0.521 4.521 16 H 0.106 0.894 17 C -0.184 4.184 18 N -0.450 5.450 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.175 1.175 23 C -0.138 4.138 24 H 0.082 0.918 25 H 0.128 0.872 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.100 0.900 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.723 10.807 -1.911 16.058 hybrid contribution 0.814 0.315 0.076 0.876 sum -10.909 11.122 -1.835 15.687 Atomic orbital electron populations 1.21891 0.77100 1.04139 1.02819 1.47776 1.08296 1.05994 1.72723 1.22244 0.98433 0.84020 1.03128 1.20193 0.88869 0.84270 0.76613 1.90723 1.70474 1.32677 1.50416 1.22939 0.92049 0.81991 1.06455 1.86630 1.23687 1.30923 1.84391 1.21673 0.79694 0.90514 0.71397 1.90732 1.60766 1.43073 1.48071 1.19034 0.94206 0.89172 1.10560 1.20920 0.98336 0.91888 1.09433 1.20929 0.94958 0.96416 0.99323 1.21501 0.93400 0.97996 1.09372 1.17907 0.94490 0.91001 0.90148 1.19868 0.91125 1.03711 1.37381 0.89375 1.26869 1.06433 0.93391 0.91750 1.69863 1.40217 1.12143 1.22738 0.85137 0.75325 0.80074 0.78815 1.18937 1.19403 1.17526 1.21465 0.91767 0.98450 1.02077 0.91829 0.87249 0.92399 0.90812 0.86752 0.91018 0.86749 0.86480 0.86050 0.84454 0.86494 0.90007 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.41 127.77 1.33 2.52 16 2 N -0.61 -11.49 3.27 -871.90 -2.85 -14.34 16 3 C 0.06 0.63 9.74 127.77 1.24 1.88 16 4 C 0.51 14.73 7.75 87.66 0.68 15.41 16 5 O -0.56 -21.42 16.08 15.77 0.25 -21.17 16 6 C 0.04 1.25 4.77 71.24 0.34 1.59 16 7 O -0.34 -13.76 8.99 -49.79 -0.45 -14.21 16 8 C 0.52 24.02 7.90 70.34 0.56 24.57 16 9 O -0.53 -25.93 16.12 19.95 0.32 -25.61 16 10 C -0.13 -6.44 5.87 -20.14 -0.12 -6.56 16 11 C -0.19 -8.48 9.62 22.71 0.22 -8.26 16 12 C -0.10 -4.22 10.01 22.17 0.22 -4.00 16 13 C -0.20 -9.62 9.78 22.77 0.22 -9.39 16 14 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 15 C -0.49 -26.10 9.05 23.47 0.21 -25.89 16 16 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 17 C 0.03 1.56 5.14 85.25 0.44 2.00 16 18 N -0.82 -44.31 10.96 21.82 0.24 -44.07 16 19 Si 0.99 38.21 29.60 68.60 2.03 40.24 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 22 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 23 C -0.12 -6.50 8.23 23.02 0.19 -6.31 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.11 0.76 7.92 -2.39 -0.02 0.74 16 26 H 0.06 1.11 7.42 -2.39 -0.02 1.09 16 27 H 0.07 0.67 7.85 -2.38 -0.02 0.65 16 28 H 0.11 0.44 7.79 -2.39 -0.02 0.43 16 29 H 0.07 0.69 7.85 -2.38 -0.02 0.67 16 30 H 0.11 2.96 7.86 -2.38 -0.02 2.94 16 31 H 0.12 2.95 7.86 -2.39 -0.02 2.93 16 32 H 0.12 5.14 7.59 -2.91 -0.02 5.12 16 33 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 34 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 36 H 0.11 6.59 5.75 -2.91 -0.02 6.57 16 Total: -1.00 -71.90 318.54 6.05 -65.84 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.09 Total: 22.28 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 5.42 Total: -8.97 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -2.62 Total: -58.42 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: 0.13 Total: -60.98 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -71.90 6.05 -65.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051534891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.531 kcal (2) G-P(sol) polarization free energy of solvation -71.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds