Wall clock time and date at job start Mon Mar 30 2020 01:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47330 * 2 1 4 4 C 1.34774 * 120.00063 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00471 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99868 * 179.97438 * 4 3 2 7 7 O 1.45200 * 109.46986 * 179.97438 * 6 4 3 8 8 C 1.34713 * 117.00009 * 180.02562 * 7 6 4 9 9 O 1.21468 * 120.00055 * 0.02562 * 8 7 6 10 10 C 1.47764 * 119.99945 * 179.97438 * 8 7 6 11 11 C 1.39974 * 120.03385 * 0.02681 * 10 8 7 12 12 C 1.38308 * 120.35505 * 179.97438 * 11 10 8 13 13 C 1.37765 * 120.41921 * 359.97438 * 12 11 10 14 14 C 1.40756 * 120.05164 * 359.97438 * 13 12 11 15 15 C 1.41437 * 120.17935 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00162 * 150.17516 * 15 14 13 17 17 C 1.39939 * 119.99658 * 330.18336 * 15 14 13 18 18 N 1.30828 * 119.99689 * 161.73338 * 17 15 14 19 19 Si 1.86794 * 120.00027 * 341.72052 * 17 15 14 20 20 H 1.48505 * 109.47034 * 95.41935 * 19 17 15 21 21 H 1.48490 * 109.47544 * 215.41744 * 19 17 15 22 22 H 1.48499 * 109.47417 * 335.42043 * 19 17 15 23 23 C 1.39050 * 120.02948 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.46778 * 60.00388 * 1 2 3 25 25 H 1.08996 * 109.46841 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47323 * 300.00678 * 1 2 3 27 27 H 1.09002 * 109.47798 * 239.99265 * 2 1 3 28 28 H 1.09000 * 109.46778 * 119.99612 * 2 1 3 29 29 H 0.96999 * 120.00072 * 359.97438 * 3 2 1 30 30 H 1.09007 * 109.47214 * 60.00217 * 6 4 3 31 31 H 1.09000 * 109.47326 * 299.99991 * 6 4 3 32 32 H 1.07996 * 119.81642 * 359.97438 * 11 10 8 33 33 H 1.07998 * 119.79256 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.97539 * 180.02562 * 13 12 11 35 35 H 0.97006 * 119.99467 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.20455 * 0.30596 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1316 0.7056 0.0015 6 6 3.8458 3.0482 -0.0001 7 8 5.2978 3.0482 0.0013 8 6 5.9094 4.2485 0.0015 9 8 5.2479 5.2672 0.0011 10 6 7.3850 4.3258 0.0034 11 6 8.1480 3.1523 0.0044 12 6 9.5296 3.2168 0.0057 13 6 10.1709 4.4361 0.0054 14 6 9.4207 5.6271 0.0033 15 6 10.0763 6.8804 0.0025 16 1 9.6081 7.7345 -0.4641 17 6 11.3317 7.0136 0.6062 18 7 12.0939 8.0354 0.3118 19 14 11.9191 5.7328 1.8325 20 1 12.7643 4.7307 1.1349 21 1 12.7138 6.3951 2.8977 22 1 10.7460 5.0542 2.4397 23 6 8.0170 5.5644 0.0031 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3881 2.1185 -0.0004 30 1 3.4820 3.5626 0.8895 31 1 3.4829 3.5616 -0.8905 32 1 7.6552 2.1913 0.0042 33 1 10.1094 2.3057 0.0069 34 1 11.2500 4.4782 0.0060 35 1 12.9644 8.1275 0.7300 36 1 7.4325 6.4726 0.0064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051538010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:27 Heat of formation + Delta-G solvation = -108.564994 kcal Electronic energy + Delta-G solvation = -20216.042072 eV Core-core repulsion = 16857.882904 eV Total energy + Delta-G solvation = -3358.159168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37630 -39.45988 -37.65753 -36.06817 -35.45463 -33.71542 -31.45948 -30.79566 -30.14940 -28.34369 -25.29685 -23.79904 -22.94855 -20.98756 -20.73135 -20.39668 -18.18279 -17.24979 -16.91685 -16.61845 -16.20975 -15.95340 -15.55437 -15.12494 -14.67620 -14.26449 -13.91689 -13.78393 -13.10345 -12.92310 -12.89349 -12.77152 -12.39301 -12.24817 -12.05411 -11.86297 -11.63557 -11.10599 -10.83566 -10.64428 -10.60015 -10.20055 -10.06095 -9.86266 -9.70031 -9.42085 -9.26032 -7.98245 -7.80117 -7.02021 -4.57530 1.63754 2.33315 2.37296 2.49748 3.04773 3.16103 3.21300 3.32904 3.38612 3.91821 4.39893 4.42253 4.63629 4.68496 4.92581 4.96805 4.98395 5.26028 5.33893 5.40802 5.50592 5.62737 5.90299 6.06840 6.17843 6.28481 6.56939 6.62016 6.63071 6.92858 7.11378 7.16097 7.38643 7.48016 7.69898 7.86030 7.93806 8.20652 8.25073 8.47955 8.68345 10.00122 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.044933 B = 0.003223 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.998276 B = 8686.483936 C = 9085.477494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.732 5.732 4 C 0.515 3.485 5 O -0.512 6.512 6 C 0.047 3.953 7 O -0.329 6.329 8 C 0.515 3.485 9 O -0.519 6.519 10 C -0.097 4.097 11 C -0.187 4.187 12 C -0.090 4.090 13 C -0.210 4.210 14 C 0.078 3.922 15 C -0.444 4.444 16 H 0.094 0.906 17 C 0.084 3.916 18 N -0.803 5.803 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.243 1.243 23 C -0.133 4.133 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.402 0.598 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.287 0.713 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.209 -11.348 0.708 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.388 5.388 4 C 0.300 3.700 5 O -0.386 6.386 6 C -0.031 4.031 7 O -0.245 6.245 8 C 0.362 3.638 9 O -0.409 6.409 10 C -0.098 4.098 11 C -0.207 4.207 12 C -0.108 4.108 13 C -0.229 4.229 14 C 0.075 3.925 15 C -0.472 4.472 16 H 0.112 0.888 17 C -0.136 4.136 18 N -0.427 5.427 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.216 1.216 22 H -0.166 1.166 23 C -0.152 4.152 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.236 0.764 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.616 -11.544 0.715 20.245 hybrid contribution -0.096 0.042 0.488 0.500 sum -16.711 -11.502 1.203 20.323 Atomic orbital electron populations 1.22010 0.94248 1.03359 1.02640 1.21318 0.94252 0.82493 1.02716 1.45885 1.06567 1.09322 1.77025 1.20194 0.82488 0.90700 0.76619 1.90767 1.55010 1.45871 1.46970 1.22541 0.80928 0.94727 1.04896 1.86689 1.19256 1.33789 1.84789 1.21927 0.90063 0.80163 0.71636 1.90765 1.66914 1.35971 1.47248 1.18709 0.86060 0.95716 1.09308 1.20704 0.93564 0.96199 1.10194 1.20607 0.93953 0.96757 0.99466 1.21295 0.98677 0.92718 1.10232 1.17641 0.90956 0.93262 0.90645 1.19466 1.00429 0.95884 1.31431 0.88789 1.26150 0.95030 0.96063 0.96330 1.69689 1.09101 1.28561 1.35362 0.86347 0.80034 0.80182 0.80009 1.19433 1.21559 1.16623 1.21266 0.94296 0.94741 1.04904 0.91866 0.90653 0.91862 0.91286 0.91293 0.76356 0.88290 0.88278 0.86881 0.87817 0.87615 0.90285 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.03 37.16 0.37 -0.32 16 2 C 0.12 0.85 6.39 -4.04 -0.03 0.82 16 3 N -0.73 -6.05 5.56 -60.29 -0.33 -6.39 16 4 C 0.52 6.54 7.91 -10.99 -0.09 6.46 16 5 O -0.51 -8.87 16.50 -14.11 -0.23 -9.10 16 6 C 0.05 0.61 5.95 36.01 0.21 0.82 16 7 O -0.33 -5.91 8.99 -47.21 -0.42 -6.34 16 8 C 0.51 10.38 7.90 34.62 0.27 10.66 16 9 O -0.52 -10.88 16.12 -19.24 -0.31 -11.19 16 10 C -0.10 -2.14 5.87 -105.05 -0.62 -2.76 16 11 C -0.19 -3.96 9.62 -38.91 -0.37 -4.34 16 12 C -0.09 -1.90 10.01 -39.73 -0.40 -2.30 16 13 C -0.21 -4.92 7.17 -38.80 -0.28 -5.20 16 14 C 0.08 1.95 5.10 -106.87 -0.55 1.41 16 15 C -0.44 -11.80 9.57 -37.73 -0.36 -12.16 16 16 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 17 C 0.08 2.15 5.40 -17.34 -0.09 2.06 16 18 N -0.80 -21.01 13.93 55.55 0.77 -20.24 16 19 Si 0.91 20.25 24.52 -169.99 -4.17 16.08 16 20 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 21 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.24 -5.56 6.86 56.52 0.39 -5.17 16 23 C -0.13 -3.16 9.34 -38.42 -0.36 -3.51 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.40 2.04 8.47 -40.82 -0.35 1.69 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.11 2.23 7.59 -52.49 -0.40 1.83 16 33 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.11 2.44 4.72 -52.49 -0.25 2.19 16 35 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 36 H 0.12 2.77 7.64 -52.48 -0.40 2.37 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -31.31 316.37 -6.57 -37.89 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.37 Total: 2.89 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.28 Total: -8.37 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.44 Total: -26.63 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.97 Total: -26.63 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.17 Total: 16.08 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.31 -6.57 -37.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051538010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.677 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds