Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47330 * 2 1 4 4 C 1.34774 * 120.00063 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00471 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99868 * 179.97438 * 4 3 2 7 7 O 1.45200 * 109.46986 * 179.97438 * 6 4 3 8 8 C 1.34713 * 117.00009 * 180.02562 * 7 6 4 9 9 O 1.21468 * 120.00055 * 0.02562 * 8 7 6 10 10 C 1.47764 * 119.99945 * 179.97438 * 8 7 6 11 11 C 1.39974 * 120.03385 * 0.02681 * 10 8 7 12 12 C 1.38308 * 120.35505 * 179.97438 * 11 10 8 13 13 C 1.37765 * 120.41921 * 359.97438 * 12 11 10 14 14 C 1.40756 * 120.05164 * 359.97438 * 13 12 11 15 15 C 1.41437 * 120.17935 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00162 * 150.17516 * 15 14 13 17 17 C 1.39939 * 119.99658 * 330.18336 * 15 14 13 18 18 N 1.30828 * 119.99689 * 161.73338 * 17 15 14 19 19 Si 1.86794 * 120.00027 * 341.72052 * 17 15 14 20 20 H 1.48505 * 109.47034 * 95.41935 * 19 17 15 21 21 H 1.48490 * 109.47544 * 215.41744 * 19 17 15 22 22 H 1.48499 * 109.47417 * 335.42043 * 19 17 15 23 23 C 1.39050 * 120.02948 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.46778 * 60.00388 * 1 2 3 25 25 H 1.08996 * 109.46841 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47323 * 300.00678 * 1 2 3 27 27 H 1.09002 * 109.47798 * 239.99265 * 2 1 3 28 28 H 1.09000 * 109.46778 * 119.99612 * 2 1 3 29 29 H 0.96999 * 120.00072 * 359.97438 * 3 2 1 30 30 H 1.09007 * 109.47214 * 60.00217 * 6 4 3 31 31 H 1.09000 * 109.47326 * 299.99991 * 6 4 3 32 32 H 1.07996 * 119.81642 * 359.97438 * 11 10 8 33 33 H 1.07998 * 119.79256 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.97539 * 180.02562 * 13 12 11 35 35 H 0.97006 * 119.99467 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.20455 * 0.30596 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1316 0.7056 0.0015 6 6 3.8458 3.0482 -0.0001 7 8 5.2978 3.0482 0.0013 8 6 5.9094 4.2485 0.0015 9 8 5.2479 5.2672 0.0011 10 6 7.3850 4.3258 0.0034 11 6 8.1480 3.1523 0.0044 12 6 9.5296 3.2168 0.0057 13 6 10.1709 4.4361 0.0054 14 6 9.4207 5.6271 0.0033 15 6 10.0763 6.8804 0.0025 16 1 9.6081 7.7345 -0.4641 17 6 11.3317 7.0136 0.6062 18 7 12.0939 8.0354 0.3118 19 14 11.9191 5.7328 1.8325 20 1 12.7643 4.7307 1.1349 21 1 12.7138 6.3951 2.8977 22 1 10.7460 5.0542 2.4397 23 6 8.0170 5.5644 0.0031 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3881 2.1185 -0.0004 30 1 3.4820 3.5626 0.8895 31 1 3.4829 3.5616 -0.8905 32 1 7.6552 2.1913 0.0042 33 1 10.1094 2.3057 0.0069 34 1 11.2500 4.4782 0.0060 35 1 12.9644 8.1275 0.7300 36 1 7.4325 6.4726 0.0064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051538010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = -128.707572 kcal Electronic energy + Delta-G solvation = -20216.915520 eV Core-core repulsion = 16857.882904 eV Total energy + Delta-G solvation = -3359.032615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75368 -40.62801 -39.40008 -37.49063 -36.33940 -35.60172 -32.77113 -32.11323 -31.84590 -29.35505 -27.16664 -25.27804 -23.72460 -22.57791 -22.08053 -21.81839 -19.82764 -18.50506 -18.36748 -17.82252 -17.78800 -17.14308 -16.56711 -16.49594 -16.47130 -15.58557 -15.19779 -15.10611 -14.64434 -14.59911 -14.11051 -13.87757 -13.79757 -13.40803 -13.32823 -12.87790 -12.71513 -12.69838 -12.39914 -12.37467 -11.92501 -11.86019 -11.70121 -11.52676 -11.12709 -11.03529 -10.21830 -9.75605 -9.66029 -8.92620 -6.56434 -0.09165 0.69466 1.18174 1.26736 1.38573 1.41535 1.46658 1.61717 2.11352 2.31781 2.57300 3.37748 3.56108 3.78141 4.01567 4.04092 4.12464 4.22201 4.22786 4.41084 4.52062 4.53274 4.82524 4.84168 4.91696 5.02601 5.05820 5.14414 5.27454 5.35143 5.36121 5.59859 5.67631 5.80154 6.04925 6.26375 6.36521 6.58800 6.65988 6.72866 7.07190 8.15685 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.044933 B = 0.003223 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.998276 B = 8686.483936 C = 9085.477494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.110 3.890 3 N -0.710 5.710 4 C 0.517 3.483 5 O -0.565 6.565 6 C 0.039 3.961 7 O -0.337 6.337 8 C 0.523 3.477 9 O -0.531 6.531 10 C -0.104 4.104 11 C -0.168 4.168 12 C -0.087 4.087 13 C -0.213 4.213 14 C 0.063 3.937 15 C -0.482 4.482 16 H 0.058 0.942 17 C 0.048 3.952 18 N -0.844 5.844 19 Si 0.961 3.039 20 H -0.248 1.248 21 H -0.276 1.276 22 H -0.252 1.252 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.420 0.580 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.296 0.704 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.707 -13.990 1.302 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.365 5.365 4 C 0.303 3.697 5 O -0.444 6.444 6 C -0.038 4.038 7 O -0.253 6.253 8 C 0.370 3.630 9 O -0.422 6.422 10 C -0.106 4.106 11 C -0.187 4.187 12 C -0.105 4.105 13 C -0.232 4.232 14 C 0.061 3.939 15 C -0.511 4.511 16 H 0.076 0.924 17 C -0.167 4.167 18 N -0.469 5.469 19 Si 0.783 3.217 20 H -0.173 1.173 21 H -0.202 1.202 22 H -0.176 1.176 23 C -0.171 4.171 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.258 0.742 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.181 -14.178 1.297 23.092 hybrid contribution 0.101 0.719 0.242 0.765 sum -18.080 -13.459 1.539 22.592 Atomic orbital electron populations 1.21965 0.91412 1.04392 1.03523 1.21466 0.96455 0.81508 1.01828 1.45787 1.05370 1.10660 1.74696 1.20207 0.83457 0.89906 0.76150 1.90748 1.56558 1.47072 1.49994 1.22969 0.78039 0.95582 1.07168 1.86620 1.22344 1.32158 1.84169 1.21463 0.89387 0.80659 0.71519 1.90757 1.67078 1.36622 1.47777 1.18922 0.87808 0.95353 1.08484 1.21069 0.93768 0.96634 1.07249 1.21032 0.94257 0.97401 0.97778 1.21476 0.99075 0.92926 1.09770 1.17744 0.91620 0.93400 0.91155 1.19422 1.01829 0.95836 1.34047 0.92379 1.26837 0.94688 0.97908 0.97278 1.69713 1.09999 1.30308 1.36903 0.85555 0.79526 0.78404 0.78206 1.17272 1.20230 1.17554 1.21226 0.94091 0.95408 1.06377 0.90949 0.89598 0.90946 0.92249 0.92259 0.74189 0.86029 0.86015 0.84686 0.83718 0.87092 0.89338 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.03 71.98 0.72 -0.13 16 2 C 0.11 1.41 6.39 86.38 0.55 1.96 16 3 N -0.71 -9.96 5.56 -463.06 -2.57 -12.53 16 4 C 0.52 12.13 7.91 87.66 0.69 12.82 16 5 O -0.57 -18.97 16.50 15.77 0.26 -18.71 16 6 C 0.04 0.91 5.95 71.24 0.42 1.34 16 7 O -0.34 -11.41 8.99 -49.84 -0.45 -11.86 16 8 C 0.52 20.36 7.90 70.34 0.56 20.91 16 9 O -0.53 -21.74 16.12 19.94 0.32 -21.42 16 10 C -0.10 -4.51 5.87 -20.14 -0.12 -4.63 16 11 C -0.17 -6.64 9.62 22.71 0.22 -6.42 16 12 C -0.09 -3.40 10.01 22.17 0.22 -3.18 16 13 C -0.21 -9.69 7.17 22.77 0.16 -9.53 16 14 C 0.06 3.23 5.10 -21.32 -0.11 3.12 16 15 C -0.48 -26.93 9.57 23.47 0.22 -26.70 16 16 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 17 C 0.05 2.54 5.40 85.25 0.46 3.00 16 18 N -0.84 -45.57 13.93 21.83 0.30 -45.26 16 19 Si 0.96 41.19 24.52 68.60 1.68 42.87 16 20 H -0.25 -9.75 6.71 99.48 0.67 -9.09 16 21 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.25 -11.05 6.86 99.48 0.68 -10.37 16 23 C -0.15 -7.34 9.34 23.02 0.21 -7.13 16 24 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.09 0.34 8.14 -2.39 -0.02 0.33 16 26 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.42 2.86 8.47 -92.71 -0.79 2.08 16 30 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.14 4.81 7.59 -2.91 -0.02 4.79 16 33 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 34 H 0.11 4.90 4.72 -2.91 -0.01 4.89 16 35 H 0.30 14.27 8.30 -92.70 -0.77 13.50 16 36 H 0.11 5.27 7.64 -2.91 -0.02 5.24 16 Total: -1.00 -69.75 316.37 4.03 -65.72 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.26 Total: 15.77 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.22 Total: -14.57 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -2.27 Total: -57.80 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: 0.13 Total: -52.00 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.68 Total: 42.87 kcal Total: -69.75 4.03 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051538010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.989 kcal (2) G-P(sol) polarization free energy of solvation -69.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds