Wall clock time and date at job start Mon Mar 30 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00028 * 2 1 4 4 C 1.50693 * 109.47415 * 270.00496 * 3 2 1 5 5 H 1.08005 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00140 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00172 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99986 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47208 * 89.99554 * 8 6 4 10 10 H 1.48494 * 109.47123 * 210.00144 * 8 6 4 11 11 H 1.48499 * 109.46919 * 329.99907 * 8 6 4 12 12 C 1.34770 * 119.99974 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99948 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00303 * 0.02562 * 12 2 1 15 15 O 1.42901 * 109.47297 * 179.97438 * 14 12 2 16 16 C 1.35601 * 116.99687 * 179.97438 * 15 14 12 17 17 C 1.38683 * 120.17278 * 359.95134 * 16 15 14 18 18 C 1.38050 * 120.11330 * 180.02562 * 17 16 15 19 19 C 1.38635 * 120.45286 * 0.02562 * 18 17 16 20 20 C 1.37674 * 120.33597 * 0.02562 * 19 18 17 21 21 C 1.40012 * 119.88240 * 359.97438 * 20 19 18 22 22 C 1.46785 * 120.22034 * 180.02562 * 21 20 19 23 23 O 1.21293 * 120.00523 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47018 * 269.99845 * 1 2 3 25 25 H 1.08997 * 109.47292 * 29.99649 * 1 2 3 26 26 H 1.09004 * 109.47121 * 149.99406 * 1 2 3 27 27 H 1.09003 * 109.46750 * 30.00359 * 3 2 1 28 28 H 1.09000 * 109.46711 * 149.99600 * 3 2 1 29 29 H 0.97002 * 120.00139 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47445 * 59.99687 * 14 12 2 31 31 H 1.09009 * 109.46632 * 299.99799 * 14 12 2 32 32 H 1.07999 * 119.94598 * 0.04542 * 17 16 15 33 33 H 1.07994 * 119.77766 * 180.27601 * 18 17 16 34 34 H 1.08000 * 119.82889 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.05229 * 179.97438 * 20 19 18 36 36 H 1.08005 * 120.00197 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6726 7 7 3.3455 3.2576 -2.9125 8 14 3.7330 3.9293 -0.2527 9 1 5.1065 3.5081 0.1231 10 1 3.7477 5.3560 -0.6641 11 1 2.8271 3.7592 0.9116 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 8 2.3141 -3.5584 -0.0027 16 6 1.7957 -4.8114 -0.0032 17 6 0.4214 -4.9973 -0.0019 18 6 -0.1050 -6.2735 -0.0019 19 6 0.7319 -7.3787 -0.0028 20 6 2.0990 -7.2158 -0.0031 21 6 2.6480 -5.9277 -0.0031 22 6 4.1044 -5.7454 -0.0040 23 8 4.8368 -6.7123 -0.0052 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.8223 4.0835 -3.0898 30 1 0.7591 -2.5295 -0.8919 31 1 0.7584 -2.5306 0.8881 32 1 -0.2382 -4.1421 -0.0011 33 1 -1.1760 -6.4119 -0.0054 34 1 0.3093 -8.3726 -0.0024 35 1 2.7467 -8.0800 -0.0034 36 1 4.5241 -4.7503 -0.0035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057949787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:24 Heat of formation + Delta-G solvation = -67.908386 kcal Electronic energy + Delta-G solvation = -20652.532081 eV Core-core repulsion = 17296.135917 eV Total energy + Delta-G solvation = -3356.396165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71102 -39.31741 -38.47013 -37.26091 -35.08311 -32.66234 -31.71303 -30.60707 -29.41671 -27.57870 -25.96378 -25.01544 -22.96824 -21.95564 -21.15460 -18.84478 -18.55897 -17.09647 -16.99976 -16.54037 -16.37484 -16.00541 -15.59699 -14.95708 -14.69428 -14.43114 -14.29545 -14.14959 -13.84702 -13.37516 -12.85229 -12.69104 -12.46441 -12.35743 -12.20133 -12.05615 -11.62274 -11.45299 -11.32702 -10.98629 -10.59425 -10.22279 -9.77363 -9.62557 -9.33556 -9.21808 -8.65155 -8.53113 -7.89918 -6.14861 -4.14989 0.46386 1.12349 2.36387 2.58402 3.05393 3.25281 3.30966 3.33518 3.55784 3.81893 4.21001 4.33979 4.49720 4.53326 4.72851 4.83257 4.97134 4.98261 4.99585 5.18347 5.26710 5.39464 5.47696 5.56596 5.66404 5.82109 5.99318 6.04837 6.17548 6.37810 6.55038 6.81469 7.00887 7.16012 7.41353 7.51842 7.99698 8.37637 8.71530 8.87649 9.44248 10.98308 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.003799 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.649972 B = 7369.103894 C = 7999.457835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.217 3.783 4 C -0.534 4.534 5 H 0.075 0.925 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.515 6.515 14 C 0.041 3.959 15 O -0.281 6.281 16 C 0.187 3.813 17 C -0.228 4.228 18 C -0.044 4.044 19 C -0.178 4.178 20 C -0.023 4.023 21 C -0.225 4.225 22 C 0.391 3.609 23 O -0.473 6.473 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.039 0.961 29 H 0.266 0.734 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 -16.405 7.865 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.326 5.326 3 C 0.097 3.903 4 C -0.573 4.573 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.293 3.707 13 O -0.390 6.390 14 C -0.038 4.038 15 O -0.192 6.192 16 C 0.139 3.861 17 C -0.246 4.246 18 C -0.062 4.062 19 C -0.196 4.196 20 C -0.041 4.041 21 C -0.226 4.226 22 C 0.251 3.749 23 O -0.347 6.347 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.851 -16.659 7.752 20.848 hybrid contribution -0.294 0.841 0.470 1.007 sum -10.145 -15.818 8.222 20.512 Atomic orbital electron populations 1.21754 0.80667 1.03334 1.00803 1.47756 1.06408 1.06588 1.71897 1.19730 0.92544 0.79362 0.98622 1.21298 1.37510 1.07326 0.91127 0.90697 1.24856 0.95103 0.97326 0.95637 1.69891 1.41156 1.23559 1.18695 0.86845 0.80223 0.79798 0.82788 1.19784 1.20989 1.19049 1.19654 0.88145 0.84194 0.78724 1.90733 1.13364 1.86627 1.48276 1.22772 0.92018 0.85464 1.03521 1.86095 1.35059 1.11337 1.86673 1.19336 0.91797 0.84202 0.90770 1.21303 0.93608 0.99154 1.10554 1.21195 1.00153 0.91712 0.93154 1.21039 0.93288 0.99188 1.06114 1.21305 0.95287 0.95794 0.91695 1.20338 0.96541 0.91665 1.14106 1.23947 0.87091 0.94657 0.69206 1.90487 1.62673 1.45525 1.36053 0.93181 0.89961 0.92322 0.94813 0.94313 0.92438 0.88822 0.89080 0.84625 0.85233 0.85351 0.84376 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 10.24 59.85 0.61 1.63 16 2 N -0.59 -11.24 2.86 -182.96 -0.52 -11.76 16 3 C 0.22 5.07 4.23 -5.20 -0.02 5.04 16 4 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 5 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 8 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 12 C 0.51 9.70 7.75 -10.99 -0.09 9.61 16 13 O -0.51 -12.37 16.08 -14.35 -0.23 -12.60 16 14 C 0.04 0.53 3.77 36.01 0.14 0.67 16 15 O -0.28 -4.10 8.85 -38.41 -0.34 -4.44 16 16 C 0.19 2.28 6.71 -38.59 -0.26 2.02 16 17 C -0.23 -2.15 9.03 -39.49 -0.36 -2.51 16 18 C -0.04 -0.35 10.03 -39.50 -0.40 -0.75 16 19 C -0.18 -1.50 10.02 -39.64 -0.40 -1.89 16 20 C -0.02 -0.24 9.59 -39.12 -0.38 -0.61 16 21 C -0.22 -2.79 5.88 -104.95 -0.62 -3.41 16 22 C 0.39 5.34 11.19 34.19 0.38 5.72 16 23 O -0.47 -7.48 17.16 5.55 0.10 -7.38 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 26 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 27 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 28 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 1.01 6.92 -51.93 -0.36 0.65 16 31 H 0.09 0.88 7.62 -51.92 -0.40 0.48 16 32 H 0.14 0.99 6.30 -52.49 -0.33 0.65 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.14 1.34 7.65 -52.48 -0.40 0.94 16 36 H 0.12 1.52 7.64 -52.48 -0.40 1.12 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -35.47 316.23 -6.17 -41.64 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.23 Total: -2.53 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.82 Total: 2.31 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.25 Total: -38.11 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.48 Total: -24.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.47 -6.17 -41.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057949787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.264 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds