Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00028 * 2 1 4 4 C 1.50693 * 109.47415 * 270.00496 * 3 2 1 5 5 H 1.08005 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00140 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00172 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99986 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47208 * 89.99554 * 8 6 4 10 10 H 1.48494 * 109.47123 * 210.00144 * 8 6 4 11 11 H 1.48499 * 109.46919 * 329.99907 * 8 6 4 12 12 C 1.34770 * 119.99974 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99948 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00303 * 0.02562 * 12 2 1 15 15 O 1.42901 * 109.47297 * 179.97438 * 14 12 2 16 16 C 1.35601 * 116.99687 * 179.97438 * 15 14 12 17 17 C 1.38683 * 120.17278 * 359.95134 * 16 15 14 18 18 C 1.38050 * 120.11330 * 180.02562 * 17 16 15 19 19 C 1.38635 * 120.45286 * 0.02562 * 18 17 16 20 20 C 1.37674 * 120.33597 * 0.02562 * 19 18 17 21 21 C 1.40012 * 119.88240 * 359.97438 * 20 19 18 22 22 C 1.46785 * 120.22034 * 180.02562 * 21 20 19 23 23 O 1.21293 * 120.00523 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47018 * 269.99845 * 1 2 3 25 25 H 1.08997 * 109.47292 * 29.99649 * 1 2 3 26 26 H 1.09004 * 109.47121 * 149.99406 * 1 2 3 27 27 H 1.09003 * 109.46750 * 30.00359 * 3 2 1 28 28 H 1.09000 * 109.46711 * 149.99600 * 3 2 1 29 29 H 0.97002 * 120.00139 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47445 * 59.99687 * 14 12 2 31 31 H 1.09009 * 109.46632 * 299.99799 * 14 12 2 32 32 H 1.07999 * 119.94598 * 0.04542 * 17 16 15 33 33 H 1.07994 * 119.77766 * 180.27601 * 18 17 16 34 34 H 1.08000 * 119.82889 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.05229 * 179.97438 * 20 19 18 36 36 H 1.08005 * 120.00197 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6726 7 7 3.3455 3.2576 -2.9125 8 14 3.7330 3.9293 -0.2527 9 1 5.1065 3.5081 0.1231 10 1 3.7477 5.3560 -0.6641 11 1 2.8271 3.7592 0.9116 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 8 2.3141 -3.5584 -0.0027 16 6 1.7957 -4.8114 -0.0032 17 6 0.4214 -4.9973 -0.0019 18 6 -0.1050 -6.2735 -0.0019 19 6 0.7319 -7.3787 -0.0028 20 6 2.0990 -7.2158 -0.0031 21 6 2.6480 -5.9277 -0.0031 22 6 4.1044 -5.7454 -0.0040 23 8 4.8368 -6.7123 -0.0052 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.8223 4.0835 -3.0898 30 1 0.7591 -2.5295 -0.8919 31 1 0.7584 -2.5306 0.8881 32 1 -0.2382 -4.1421 -0.0011 33 1 -1.1760 -6.4119 -0.0054 34 1 0.3093 -8.3726 -0.0024 35 1 2.7467 -8.0800 -0.0034 36 1 4.5241 -4.7503 -0.0035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057949787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = -92.386031 kcal Electronic energy + Delta-G solvation = -20653.593512 eV Core-core repulsion = 17296.135917 eV Total energy + Delta-G solvation = -3357.457595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.66539 -40.60949 -39.64500 -38.16056 -36.66493 -34.72888 -32.56516 -31.56898 -30.84821 -28.87151 -27.29728 -25.90716 -24.52787 -23.05679 -22.09195 -20.23132 -19.47207 -19.16494 -18.07425 -17.67381 -17.48073 -17.03573 -17.02109 -16.30205 -15.92414 -15.59299 -15.32716 -15.14408 -15.07320 -14.76650 -14.35066 -13.90830 -13.77457 -13.65203 -13.39453 -13.21371 -12.84069 -12.76632 -12.44716 -12.20744 -12.16981 -11.99349 -11.74659 -10.87423 -10.83489 -10.70568 -10.08573 -9.46246 -9.33303 -8.34312 -6.39943 -0.38054 0.38419 1.33175 1.38396 1.42383 1.45376 1.51821 1.66551 2.31153 2.59571 2.77996 3.00597 3.30548 3.46831 3.76370 3.91509 3.98925 4.07943 4.27686 4.32603 4.41086 4.43652 4.59999 4.68386 4.80826 4.88067 4.94470 5.00527 5.11090 5.35735 5.44649 5.46909 5.53441 5.69866 6.15926 6.23049 6.36441 6.59228 6.62331 7.18782 7.32061 8.82499 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.003799 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.649972 B = 7369.103894 C = 7999.457835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.600 5.600 3 C 0.223 3.777 4 C -0.539 4.539 5 H 0.030 0.970 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.233 1.233 12 C 0.495 3.505 13 O -0.582 6.582 14 C 0.053 3.947 15 O -0.314 6.314 16 C 0.170 3.830 17 C -0.225 4.225 18 C -0.032 4.032 19 C -0.171 4.171 20 C -0.033 4.033 21 C -0.250 4.250 22 C 0.392 3.608 23 O -0.505 6.505 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.268 0.732 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.897 -17.322 9.792 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.332 5.332 3 C 0.101 3.899 4 C -0.578 4.578 5 H 0.049 0.951 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.156 1.156 12 C 0.282 3.718 13 O -0.462 6.462 14 C -0.025 4.025 15 O -0.226 6.226 16 C 0.123 3.877 17 C -0.243 4.243 18 C -0.050 4.050 19 C -0.189 4.189 20 C -0.052 4.052 21 C -0.252 4.252 22 C 0.255 3.745 23 O -0.382 6.382 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.155 0.845 32 H 0.183 0.817 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.155 0.845 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.637 -17.590 9.692 24.276 hybrid contribution 0.751 1.021 -0.208 1.284 sum -12.886 -16.568 9.485 23.033 Atomic orbital electron populations 1.22148 0.76775 1.04679 1.03689 1.47847 1.08846 1.05236 1.71303 1.19388 0.92927 0.82237 0.95335 1.21580 1.36957 1.06712 0.92506 0.95138 1.25864 0.95281 0.99045 0.98588 1.70049 1.42648 1.24504 1.21354 0.85725 0.79565 0.77723 0.79992 1.20507 1.20114 1.15602 1.20782 0.87841 0.86202 0.76959 1.90696 1.16493 1.87820 1.51193 1.22760 0.90890 0.81884 1.06929 1.86043 1.36565 1.12515 1.87482 1.19492 0.93173 0.82877 0.92150 1.21669 0.92283 1.01039 1.09336 1.21697 1.02089 0.90660 0.90522 1.21438 0.92192 1.01106 1.04143 1.21442 0.96691 0.94849 0.92188 1.20287 0.95396 0.93079 1.16433 1.24016 0.88369 0.93968 0.68126 1.90460 1.63606 1.46054 1.38090 0.89346 0.91203 0.88567 0.92397 0.96359 0.92274 0.85937 0.84491 0.81713 0.81245 0.82414 0.84547 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 10.24 127.77 1.31 2.84 16 2 N -0.60 -21.96 2.86 -851.15 -2.43 -24.39 16 3 C 0.22 10.34 4.23 85.63 0.36 10.70 16 4 C -0.54 -30.92 9.94 25.60 0.25 -30.66 16 5 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 6 C 0.01 0.60 5.47 84.65 0.46 1.06 16 7 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 8 Si 0.95 43.57 27.47 68.60 1.88 45.46 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.23 -9.41 6.54 99.48 0.65 -8.76 16 12 C 0.49 18.63 7.75 87.66 0.68 19.31 16 13 O -0.58 -29.11 16.08 16.00 0.26 -28.85 16 14 C 0.05 1.23 3.77 71.24 0.27 1.49 16 15 O -0.31 -8.93 8.85 -70.08 -0.62 -9.55 16 16 C 0.17 3.87 6.71 22.91 0.15 4.02 16 17 C -0.22 -3.24 9.03 22.33 0.20 -3.04 16 18 C -0.03 -0.34 10.03 22.32 0.22 -0.12 16 19 C -0.17 -2.23 10.02 22.23 0.22 -2.00 16 20 C -0.03 -0.66 9.59 22.57 0.22 -0.44 16 21 C -0.25 -6.19 5.88 -20.08 -0.12 -6.31 16 22 C 0.39 11.49 11.19 70.06 0.78 12.28 16 23 O -0.50 -17.03 17.16 -3.07 -0.05 -17.08 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.76 8.07 -2.39 -0.02 1.74 16 26 H 0.10 1.42 6.44 -2.39 -0.02 1.41 16 27 H 0.06 2.40 7.13 -2.39 -0.02 2.39 16 28 H 0.02 0.92 6.85 -2.39 -0.02 0.91 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.12 2.13 6.92 -2.39 -0.02 2.12 16 31 H 0.14 1.92 7.62 -2.38 -0.02 1.90 16 32 H 0.17 1.34 6.30 -2.91 -0.02 1.32 16 33 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 34 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.14 2.63 7.65 -2.91 -0.02 2.61 16 36 H 0.11 3.15 7.64 -2.91 -0.02 3.13 16 Total: -1.00 -85.05 316.23 5.40 -79.66 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.04 Total: 4.62 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.02 Total: 9.13 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.13 Total: -83.37 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -0.42 Total: -55.49 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.46 kcal Total: -85.05 5.40 -79.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057949787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.730 kcal (2) G-P(sol) polarization free energy of solvation -85.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds