Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 120.00289 * 2 1 4 4 C 1.50698 * 109.46745 * 269.99725 * 3 2 1 5 5 H 1.08002 * 120.00138 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00092 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00018 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00268 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46815 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47103 * 120.00044 * 8 6 4 11 11 H 1.48493 * 109.47051 * 239.99918 * 8 6 4 12 12 C 1.34777 * 119.99490 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99927 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00246 * 0.02562 * 12 2 1 15 15 O 1.42905 * 109.47159 * 179.97438 * 14 12 2 16 16 C 1.35663 * 117.00012 * 179.97438 * 15 14 12 17 17 C 1.39081 * 119.88517 * 0.25531 * 16 15 14 18 18 C 1.37112 * 120.11570 * 180.25506 * 17 16 15 19 19 C 1.40043 * 119.88015 * 359.46625 * 18 17 16 20 20 C 1.46865 * 120.11149 * 180.29875 * 19 18 17 21 21 O 1.21289 * 120.00170 * 0.02562 * 20 19 18 22 22 C 1.40036 * 119.77267 * 0.28070 * 19 18 17 23 23 C 1.37118 * 119.88298 * 359.97438 * 22 19 18 24 24 H 1.08997 * 109.47330 * 270.00528 * 1 2 3 25 25 H 1.09005 * 109.46646 * 30.00197 * 1 2 3 26 26 H 1.08996 * 109.47433 * 150.00436 * 1 2 3 27 27 H 1.09000 * 109.47189 * 29.99234 * 3 2 1 28 28 H 1.08997 * 109.46883 * 150.00082 * 3 2 1 29 29 H 0.96996 * 120.00335 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47248 * 59.99763 * 14 12 2 31 31 H 1.09000 * 109.46724 * 299.99394 * 14 12 2 32 32 H 1.07998 * 119.94116 * 0.02562 * 17 16 15 33 33 H 1.08002 * 120.06260 * 179.74913 * 18 17 16 34 34 H 1.08003 * 119.99729 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.05599 * 180.02562 * 22 19 18 36 36 H 1.08002 * 119.93856 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1262 2.8777 -1.6729 7 7 3.5535 3.6180 -0.6733 8 14 3.4382 3.4165 -3.4341 9 1 2.8611 2.4160 -4.3674 10 1 2.8002 4.7368 -3.6682 11 1 4.9008 3.5253 -3.6667 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1674 0.0001 14 6 1.3853 -2.4723 0.0005 15 8 2.3139 -3.5586 0.0005 16 6 1.7953 -4.8122 0.0011 17 6 0.4161 -4.9916 -0.0038 18 6 -0.1132 -6.2564 0.0020 19 6 0.7377 -7.3687 0.0015 20 6 0.1763 -8.7258 0.0011 21 8 -1.0262 -8.8847 0.0007 22 6 2.1256 -7.1825 0.0011 23 6 2.6446 -5.9134 0.0006 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5137 27 1 1.6085 2.0284 0.5137 28 1 3.1500 1.1383 0.5138 29 1 4.0298 4.4442 -0.8506 30 1 0.7589 -2.5302 -0.8896 31 1 0.7584 -2.5298 0.8904 32 1 -0.2391 -4.1331 -0.0084 33 1 -1.1843 -6.3947 0.0023 34 1 0.8342 -9.5823 0.0012 35 1 2.7860 -8.0370 0.0003 36 1 3.7149 -5.7687 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057950094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = -97.274886 kcal Electronic energy + Delta-G solvation = -20262.004494 eV Core-core repulsion = 16904.334902 eV Total energy + Delta-G solvation = -3357.669592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59153 -40.58733 -39.77682 -37.99142 -36.65914 -34.78658 -32.32303 -31.79354 -30.61616 -28.79203 -27.29408 -25.43664 -24.88413 -23.49007 -21.86082 -20.32434 -19.53154 -18.74583 -18.03943 -17.68843 -17.46024 -17.12256 -16.84203 -16.32084 -15.87054 -15.65650 -15.34315 -15.19736 -14.60399 -14.39603 -14.33971 -13.88097 -13.83537 -13.53455 -13.46038 -13.40420 -13.14511 -12.83255 -12.57278 -12.24271 -12.12026 -11.90932 -11.70393 -10.74939 -10.72048 -10.67282 -10.12801 -9.52734 -9.32170 -8.25469 -6.40240 -0.28555 0.36460 1.35655 1.38214 1.48828 1.52758 1.57805 1.64669 2.35612 2.65035 2.82365 3.04831 3.42217 3.47867 3.73410 3.83248 3.94092 4.02324 4.24585 4.33596 4.38322 4.56897 4.59873 4.69275 4.92286 4.96309 5.00159 5.17158 5.19116 5.25600 5.35509 5.49650 5.64930 5.76983 6.01453 6.23453 6.56934 6.60939 6.69719 7.21278 7.35627 8.82195 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.035399 B = 0.003061 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.798071 B = 9145.268082 C = 9285.969832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.494 3.506 13 O -0.585 6.585 14 C 0.054 3.946 15 O -0.315 6.315 16 C 0.146 3.854 17 C -0.229 4.229 18 C -0.028 4.028 19 C -0.250 4.250 20 C 0.397 3.603 21 O -0.514 6.514 22 C -0.009 4.009 23 C -0.183 4.183 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.032 0.968 28 H -0.002 1.002 29 H 0.268 0.732 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.181 0.819 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 -21.621 1.643 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.281 3.719 13 O -0.465 6.465 14 C -0.024 4.024 15 O -0.228 6.228 16 C 0.100 3.900 17 C -0.248 4.248 18 C -0.046 4.046 19 C -0.251 4.251 20 C 0.259 3.741 21 O -0.391 6.391 22 C -0.027 4.027 23 C -0.202 4.202 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.050 0.950 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.198 0.802 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.799 -21.447 1.694 23.243 hybrid contribution 0.440 1.211 -0.653 1.444 sum -8.360 -20.236 1.041 21.920 Atomic orbital electron populations 1.22093 0.77168 1.04611 1.03263 1.48092 1.08755 1.05724 1.70962 1.18838 0.91270 0.79951 0.96254 1.21729 1.36999 1.06589 0.92992 0.92714 1.25869 0.94842 0.96435 1.02042 1.70050 1.38882 1.14826 1.33019 0.85348 0.77865 0.78454 0.79028 1.19076 1.19289 1.20849 1.20751 0.87812 0.86114 0.77181 1.90684 1.16540 1.87834 1.51421 1.22681 0.90975 0.82358 1.06342 1.86118 1.36258 1.12771 1.87627 1.19855 0.93214 0.84104 0.92848 1.21337 0.93266 0.99901 1.10273 1.21277 1.00779 0.91285 0.91277 1.21161 0.94902 0.96921 1.12140 1.24548 0.89837 0.91997 0.67673 1.90528 1.21174 1.89487 1.37926 1.21422 0.93901 0.96863 0.90526 1.20624 1.00689 0.90738 1.08122 0.90345 0.90941 0.88474 0.95031 0.98358 0.92318 0.86134 0.85548 0.83021 0.84448 0.82993 0.80164 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.85 10.24 127.77 1.31 3.16 16 2 N -0.60 -24.66 2.86 -851.12 -2.43 -27.09 16 3 C 0.26 13.75 5.16 85.63 0.44 14.19 16 4 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.41 5.46 84.65 0.46 0.87 16 7 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 8 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 C 0.49 20.46 7.75 87.66 0.68 21.14 16 13 O -0.58 -31.49 16.08 16.01 0.26 -31.23 16 14 C 0.05 1.46 3.76 71.24 0.27 1.73 16 15 O -0.32 -9.85 9.65 -70.76 -0.68 -10.53 16 16 C 0.15 3.49 6.70 22.67 0.15 3.64 16 17 C -0.23 -4.37 8.99 22.21 0.20 -4.18 16 18 C -0.03 -0.50 9.57 22.44 0.21 -0.29 16 19 C -0.25 -3.79 5.87 -20.15 -0.12 -3.91 16 20 C 0.40 5.05 11.44 70.08 0.80 5.85 16 21 O -0.51 -11.23 17.16 -3.06 -0.05 -11.28 16 22 C -0.01 -0.12 9.77 22.44 0.22 0.10 16 23 C -0.18 -3.61 9.95 22.21 0.22 -3.39 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 2.04 8.07 -2.38 -0.02 2.03 16 26 H 0.10 1.75 6.44 -2.39 -0.02 1.74 16 27 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 28 H 0.00 -0.11 7.42 -2.39 -0.02 -0.12 16 29 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.12 2.51 6.90 -2.39 -0.02 2.49 16 31 H 0.13 2.45 7.62 -2.39 -0.02 2.43 16 32 H 0.15 2.20 6.27 -2.91 -0.02 2.18 16 33 H 0.14 2.33 7.64 -2.91 -0.02 2.31 16 34 H 0.15 0.40 8.06 -2.91 -0.02 0.38 16 35 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 36 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -83.56 320.81 5.58 -77.98 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.09 Total: 3.04 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.09 Total: 8.02 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.15 Total: -82.70 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.48 Total: -53.04 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -83.56 5.58 -77.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057950094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.298 kcal (2) G-P(sol) polarization free energy of solvation -83.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds