Wall clock time and date at job start Mon Mar 30 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99611 * 2 1 4 4 C 1.53004 * 109.46822 * 269.99549 * 3 2 1 5 5 C 1.50704 * 109.46882 * 179.97438 * 4 3 2 6 6 O 1.20828 * 120.00065 * 0.02562 * 5 4 3 7 7 O 1.34231 * 119.99799 * 180.02562 * 5 4 3 8 8 C 1.34776 * 120.00576 * 179.97438 * 2 1 3 9 9 O 1.21584 * 120.00237 * 174.93368 * 8 2 1 10 10 C 1.47642 * 119.99578 * 354.93685 * 8 2 1 11 11 C 1.40011 * 119.89802 * 334.90113 * 10 8 2 12 12 C 1.36317 * 120.10715 * 180.25676 * 11 10 8 13 13 C 1.40891 * 119.89137 * 359.45224 * 12 11 10 14 14 C 1.41111 * 120.10572 * 180.29622 * 13 12 11 15 15 H 1.07994 * 120.00200 * 154.51694 * 14 13 12 16 16 C 1.40228 * 119.99658 * 334.52014 * 14 13 12 17 17 N 1.30651 * 120.00399 * 343.24930 * 16 14 13 18 18 Si 1.86802 * 119.99717 * 163.25063 * 16 14 13 19 19 H 1.48499 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46991 * 120.00112 * 18 16 14 21 21 H 1.48507 * 109.46785 * 239.99503 * 18 16 14 22 22 C 1.40888 * 119.79279 * 0.27726 * 13 12 11 23 23 C 1.36313 * 119.89015 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.47085 * 275.89752 * 1 2 3 25 25 H 1.09000 * 109.47431 * 35.90440 * 1 2 3 26 26 H 1.09007 * 109.46569 * 155.90558 * 1 2 3 27 27 H 1.08989 * 109.47333 * 30.00011 * 3 2 1 28 28 H 1.09005 * 109.46994 * 150.00269 * 3 2 1 29 29 H 1.08989 * 109.47544 * 300.00333 * 4 3 2 30 30 H 1.09005 * 109.46748 * 60.00569 * 4 3 2 31 31 H 0.96697 * 116.99360 * 180.02562 * 7 5 4 32 32 H 1.08001 * 119.94511 * 359.97438 * 11 10 8 33 33 H 1.08003 * 120.05462 * 179.72765 * 12 11 10 34 34 H 0.96995 * 119.99993 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.05484 * 180.02562 * 22 13 12 36 36 H 1.08010 * 119.94616 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 6 3.2053 3.0159 -1.4426 6 8 3.5074 3.5392 -0.3962 7 8 3.5404 3.5974 -2.6051 8 6 2.1390 -1.1671 0.0005 9 8 3.3513 -1.1691 -0.0925 10 6 1.4051 -2.4432 0.1139 11 6 0.1475 -2.4728 0.7286 12 6 -0.5315 -3.6496 0.8403 13 6 0.0291 -4.8352 0.3257 14 6 -0.6726 -6.0548 0.4333 15 1 -0.4861 -6.8493 -0.2740 16 6 -1.6122 -6.2349 1.4585 17 7 -1.6127 -5.4357 2.4921 18 14 -2.8631 -7.6177 1.3465 19 1 -2.6531 -8.3744 0.0862 20 1 -2.6971 -8.5304 2.5060 21 1 -4.2341 -7.0470 1.3582 22 6 1.2924 -4.7995 -0.2971 23 6 1.9665 -3.6191 -0.3986 24 1 -0.3633 0.1056 1.0223 25 1 -0.3634 0.8324 -0.6026 26 1 -0.3633 -0.9382 -0.4196 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.0415 0.9509 -1.9563 30 1 1.5000 1.8407 -1.9564 31 1 4.0231 4.4337 -2.5544 32 1 -0.2833 -1.5626 1.1190 33 1 -1.4996 -3.6722 1.3186 34 1 -2.2624 -5.5606 3.2014 35 1 1.7259 -5.7058 -0.6935 36 1 2.9349 -3.5905 -0.8762 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:26 Heat of formation + Delta-G solvation = -99.025121 kcal Electronic energy + Delta-G solvation = -20682.516553 eV Core-core repulsion = 17324.771066 eV Total energy + Delta-G solvation = -3357.745488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43918 -39.45349 -37.22914 -36.34505 -35.33057 -33.94998 -32.05706 -29.91323 -29.52731 -26.70933 -26.28139 -24.43393 -21.79610 -21.01156 -20.87486 -18.95938 -18.18713 -17.54106 -16.81432 -16.65604 -15.95356 -15.70053 -15.25466 -14.83638 -14.28160 -13.79066 -13.54204 -13.25267 -13.06336 -12.82907 -12.62733 -12.31756 -12.23078 -11.92917 -11.70364 -11.51458 -11.39756 -11.26732 -11.07946 -10.84378 -10.75028 -10.61541 -10.04081 -9.51928 -9.37289 -8.97811 -8.39419 -7.68189 -7.55080 -7.03301 -4.61651 2.06980 2.22194 2.77757 2.89690 2.94362 2.99563 3.00258 3.61148 3.72657 3.76220 4.48292 4.76769 4.88994 5.20820 5.36134 5.41767 5.49841 5.55382 5.72185 5.86461 6.03399 6.09046 6.14800 6.28107 6.33225 6.75382 6.81667 6.85231 7.03631 7.11182 7.42769 7.57000 7.73061 7.76969 7.84866 8.00164 8.06993 8.39259 8.62547 8.73994 8.92750 9.88846 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.003357 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.924397 B = 8338.248132 C = 8610.887439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.625 5.625 3 C 0.132 3.868 4 C -0.131 4.131 5 C 0.486 3.514 6 O -0.518 6.518 7 O -0.519 6.519 8 C 0.573 3.427 9 O -0.568 6.568 10 C -0.283 4.283 11 C -0.080 4.080 12 C -0.179 4.179 13 C 0.128 3.872 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.773 5.773 18 Si 0.913 3.087 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.237 4.237 23 C -0.024 4.024 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.408 0.592 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 10.719 -5.499 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.358 5.358 3 C 0.008 3.992 4 C -0.170 4.170 5 C 0.328 3.672 6 O -0.406 6.406 7 O -0.331 6.331 8 C 0.369 3.631 9 O -0.448 6.448 10 C -0.288 4.288 11 C -0.098 4.098 12 C -0.198 4.198 13 C 0.125 3.875 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.396 5.396 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.257 4.257 23 C -0.044 4.044 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.267 0.733 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.344 10.516 -5.030 11.663 hybrid contribution -0.313 0.034 0.149 0.348 sum -0.657 10.550 -4.881 11.643 Atomic orbital electron populations 1.22382 0.79731 1.03844 1.01104 1.47709 1.06856 1.05221 1.76055 1.21029 0.99108 0.85751 0.93275 1.21828 1.01365 0.91791 1.02029 1.23481 0.76425 0.86487 0.80792 1.90727 1.52103 1.64511 1.33254 1.84562 1.70901 1.41381 1.36211 1.18795 0.86696 0.83581 0.74009 1.90647 1.14501 1.87509 1.52190 1.18826 0.99375 0.91868 1.18683 1.21163 0.93444 0.98006 0.97230 1.21015 1.01233 0.91247 1.06336 1.17808 0.89535 0.93045 0.87118 1.19867 1.16792 1.00022 1.10490 0.89760 1.26090 0.97143 0.97460 0.93991 1.69748 1.30251 1.34276 1.05360 0.86176 0.79903 0.80540 0.79745 1.18104 1.19697 1.19406 1.20708 0.96843 0.96353 1.11763 1.20320 0.96949 0.91680 0.95410 0.92613 0.92697 0.88192 0.90154 0.89235 0.86950 0.87618 0.73347 0.87198 0.86185 0.90306 0.88430 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 8.69 59.85 0.52 1.48 16 2 N -0.62 -10.17 2.87 -182.76 -0.53 -10.69 16 3 C 0.13 1.87 4.69 -4.04 -0.02 1.85 16 4 C -0.13 -1.55 6.14 -27.88 -0.17 -1.73 16 5 C 0.49 5.70 8.33 36.01 0.30 6.00 16 6 O -0.52 -7.52 16.74 -18.75 -0.31 -7.84 16 7 O -0.52 -4.71 13.42 -39.26 -0.53 -5.23 16 8 C 0.57 11.89 7.47 -12.42 -0.09 11.80 16 9 O -0.57 -13.23 16.23 5.29 0.09 -13.15 16 10 C -0.28 -6.29 5.50 -104.73 -0.58 -6.87 16 11 C -0.08 -1.71 7.44 -39.61 -0.29 -2.00 16 12 C -0.18 -4.26 8.63 -39.27 -0.34 -4.60 16 13 C 0.13 3.20 5.57 -106.80 -0.59 2.60 16 14 C -0.44 -10.87 9.05 -37.75 -0.34 -11.21 16 15 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 16 C 0.07 1.71 5.15 -17.31 -0.09 1.62 16 17 N -0.77 -18.35 10.94 55.56 0.61 -17.74 16 18 Si 0.91 17.04 29.59 -169.99 -5.03 12.01 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 22 C -0.24 -5.63 9.73 -39.27 -0.38 -6.01 16 23 C -0.02 -0.56 9.52 -39.61 -0.38 -0.94 16 24 H 0.06 0.70 7.12 -51.93 -0.37 0.33 16 25 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 26 H 0.10 1.50 5.12 -51.93 -0.27 1.24 16 27 H 0.08 0.99 8.03 -51.94 -0.42 0.57 16 28 H 0.09 1.47 7.45 -51.93 -0.39 1.09 16 29 H 0.11 1.47 8.14 -51.94 -0.42 1.05 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.41 1.89 9.10 45.56 0.41 2.31 16 32 H 0.11 2.01 4.45 -52.49 -0.23 1.78 16 33 H 0.12 2.90 6.18 -52.48 -0.32 2.57 16 34 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 35 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.10 2.15 7.84 -52.48 -0.41 1.74 16 LS Contribution 310.96 15.07 4.69 4.69 Total: -1.00 -30.31 310.96 -6.71 -37.02 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -3.23 Total: 8.94 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.46 Total: -8.00 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: 0.08 Total: -28.43 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.76 Total: -26.22 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.31 -6.71 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.009 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds