Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99611 * 2 1 4 4 C 1.53004 * 109.46822 * 269.99549 * 3 2 1 5 5 C 1.50704 * 109.46882 * 179.97438 * 4 3 2 6 6 O 1.20828 * 120.00065 * 0.02562 * 5 4 3 7 7 O 1.34231 * 119.99799 * 180.02562 * 5 4 3 8 8 C 1.34776 * 120.00576 * 179.97438 * 2 1 3 9 9 O 1.21584 * 120.00237 * 174.93368 * 8 2 1 10 10 C 1.47642 * 119.99578 * 354.93685 * 8 2 1 11 11 C 1.40011 * 119.89802 * 334.90113 * 10 8 2 12 12 C 1.36317 * 120.10715 * 180.25676 * 11 10 8 13 13 C 1.40891 * 119.89137 * 359.45224 * 12 11 10 14 14 C 1.41111 * 120.10572 * 180.29622 * 13 12 11 15 15 H 1.07994 * 120.00200 * 154.51694 * 14 13 12 16 16 C 1.40228 * 119.99658 * 334.52014 * 14 13 12 17 17 N 1.30651 * 120.00399 * 343.24930 * 16 14 13 18 18 Si 1.86802 * 119.99717 * 163.25063 * 16 14 13 19 19 H 1.48499 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46991 * 120.00112 * 18 16 14 21 21 H 1.48507 * 109.46785 * 239.99503 * 18 16 14 22 22 C 1.40888 * 119.79279 * 0.27726 * 13 12 11 23 23 C 1.36313 * 119.89015 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.47085 * 275.89752 * 1 2 3 25 25 H 1.09000 * 109.47431 * 35.90440 * 1 2 3 26 26 H 1.09007 * 109.46569 * 155.90558 * 1 2 3 27 27 H 1.08989 * 109.47333 * 30.00011 * 3 2 1 28 28 H 1.09005 * 109.46994 * 150.00269 * 3 2 1 29 29 H 1.08989 * 109.47544 * 300.00333 * 4 3 2 30 30 H 1.09005 * 109.46748 * 60.00569 * 4 3 2 31 31 H 0.96697 * 116.99360 * 180.02562 * 7 5 4 32 32 H 1.08001 * 119.94511 * 359.97438 * 11 10 8 33 33 H 1.08003 * 120.05462 * 179.72765 * 12 11 10 34 34 H 0.96995 * 119.99993 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.05484 * 180.02562 * 22 13 12 36 36 H 1.08010 * 119.94616 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 6 3.2053 3.0159 -1.4426 6 8 3.5074 3.5392 -0.3962 7 8 3.5404 3.5974 -2.6051 8 6 2.1390 -1.1671 0.0005 9 8 3.3513 -1.1691 -0.0925 10 6 1.4051 -2.4432 0.1139 11 6 0.1475 -2.4728 0.7286 12 6 -0.5315 -3.6496 0.8403 13 6 0.0291 -4.8352 0.3257 14 6 -0.6726 -6.0548 0.4333 15 1 -0.4861 -6.8493 -0.2740 16 6 -1.6122 -6.2349 1.4585 17 7 -1.6127 -5.4357 2.4921 18 14 -2.8631 -7.6177 1.3465 19 1 -2.6531 -8.3744 0.0862 20 1 -2.6971 -8.5304 2.5060 21 1 -4.2341 -7.0470 1.3582 22 6 1.2924 -4.7995 -0.2971 23 6 1.9665 -3.6191 -0.3986 24 1 -0.3633 0.1056 1.0223 25 1 -0.3634 0.8324 -0.6026 26 1 -0.3633 -0.9382 -0.4196 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.0415 0.9509 -1.9563 30 1 1.5000 1.8407 -1.9564 31 1 4.0231 4.4337 -2.5544 32 1 -0.2833 -1.5626 1.1190 33 1 -1.4996 -3.6722 1.3186 34 1 -2.2624 -5.5606 3.2014 35 1 1.7259 -5.7058 -0.6935 36 1 2.9349 -3.5905 -0.8762 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = -117.996930 kcal Electronic energy + Delta-G solvation = -20683.339233 eV Core-core repulsion = 17324.771066 eV Total energy + Delta-G solvation = -3358.568167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.46873 -40.89989 -38.94156 -37.26814 -36.72381 -35.68421 -33.33126 -31.52091 -31.30130 -27.96733 -27.88018 -25.77992 -23.27360 -22.76334 -22.04133 -20.41949 -19.33648 -19.11183 -18.06590 -17.85576 -17.31648 -17.01151 -16.70419 -16.17624 -15.87064 -15.18295 -15.03477 -14.57572 -14.31681 -14.24395 -14.18137 -13.72511 -13.62384 -13.34538 -13.11316 -12.95294 -12.81224 -12.57790 -12.36369 -12.32440 -12.15996 -11.73879 -11.70791 -11.23767 -11.11080 -10.63397 -9.75364 -9.46805 -9.34601 -8.75711 -6.45829 0.49071 1.16097 1.16853 1.40333 1.43346 1.56663 1.79516 2.09505 2.19000 2.46435 2.75045 3.67974 3.75327 3.81537 4.15266 4.23511 4.33756 4.45346 4.47735 4.56692 4.66671 4.73750 4.91441 4.97717 5.01333 5.06191 5.19577 5.32680 5.56155 5.59670 5.65343 5.82872 5.98337 6.03294 6.26006 6.47632 6.58124 6.80992 6.92293 6.96622 7.34127 8.19706 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.003357 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.924397 B = 8338.248132 C = 8610.887439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.614 5.614 3 C 0.131 3.869 4 C -0.126 4.126 5 C 0.496 3.504 6 O -0.550 6.550 7 O -0.511 6.511 8 C 0.570 3.430 9 O -0.601 6.601 10 C -0.290 4.290 11 C -0.067 4.067 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.476 4.476 15 H 0.083 0.917 16 C 0.038 3.962 17 N -0.802 5.802 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.253 4.253 23 C -0.035 4.035 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.429 0.571 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.296 0.704 35 H 0.101 0.899 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 12.113 -5.870 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.346 5.346 3 C 0.008 3.992 4 C -0.164 4.164 5 C 0.339 3.661 6 O -0.441 6.441 7 O -0.325 6.325 8 C 0.365 3.635 9 O -0.485 6.485 10 C -0.294 4.294 11 C -0.085 4.085 12 C -0.217 4.217 13 C 0.098 3.902 14 C -0.504 4.504 15 H 0.101 0.899 16 C -0.180 4.180 17 N -0.426 5.426 18 Si 0.807 3.193 19 H -0.181 1.181 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.272 4.272 23 C -0.055 4.055 24 H 0.088 0.912 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.154 0.846 31 H 0.291 0.709 32 H 0.161 0.839 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.856 11.968 -5.426 13.270 hybrid contribution 0.224 -0.244 0.223 0.400 sum -1.631 11.723 -5.202 12.929 Atomic orbital electron populations 1.22557 0.77584 1.04831 1.02767 1.47665 1.08162 1.04621 1.74118 1.21129 0.98056 0.85013 0.94984 1.21692 1.02768 0.91585 1.00379 1.23298 0.75759 0.86194 0.80804 1.90728 1.53460 1.65443 1.34444 1.84505 1.70774 1.42604 1.34642 1.18611 0.86208 0.84462 0.74218 1.90627 1.15826 1.88152 1.53909 1.19120 0.99706 0.92589 1.18012 1.21454 0.92721 0.98535 0.95771 1.21045 1.01452 0.91826 1.07403 1.18152 0.90128 0.93991 0.87886 1.20106 1.18511 1.00189 1.11588 0.89911 1.26894 0.98273 0.99873 0.92986 1.69769 1.31064 1.35769 1.05961 0.85080 0.77368 0.77262 0.79610 1.18112 1.19131 1.18316 1.20835 0.96999 0.96928 1.12440 1.20475 0.97147 0.92103 0.95745 0.91163 0.88394 0.89882 0.87561 0.92056 0.88314 0.84647 0.70904 0.83890 0.86819 0.89300 0.88043 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.49 8.69 127.77 1.11 2.61 16 2 N -0.61 -18.74 2.87 -850.40 -2.44 -21.18 16 3 C 0.13 3.44 4.69 86.38 0.40 3.85 16 4 C -0.13 -2.68 6.14 29.85 0.18 -2.50 16 5 C 0.50 10.55 8.33 71.24 0.59 11.14 16 6 O -0.55 -15.09 16.74 21.96 0.37 -14.73 16 7 O -0.51 -7.88 13.42 -51.43 -0.69 -8.57 16 8 C 0.57 23.40 7.47 86.73 0.65 24.04 16 9 O -0.60 -28.31 16.23 -3.98 -0.06 -28.38 16 10 C -0.29 -12.90 5.50 -19.93 -0.11 -13.01 16 11 C -0.07 -2.81 7.44 22.25 0.17 -2.65 16 12 C -0.20 -9.52 8.63 22.47 0.19 -9.33 16 13 C 0.10 5.20 5.57 -21.28 -0.12 5.08 16 14 C -0.48 -23.88 9.05 23.46 0.21 -23.67 16 15 H 0.08 4.00 7.90 -2.91 -0.02 3.98 16 16 C 0.04 1.76 5.15 85.35 0.44 2.20 16 17 N -0.80 -38.18 10.94 21.87 0.24 -37.94 16 18 Si 0.99 34.54 29.59 68.60 2.03 36.57 16 19 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 20 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 21 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 22 C -0.25 -12.40 9.73 22.47 0.22 -12.18 16 23 C -0.04 -1.68 9.52 22.25 0.21 -1.46 16 24 H 0.07 1.50 7.12 -2.38 -0.02 1.48 16 25 H 0.10 1.52 8.12 -2.39 -0.02 1.50 16 26 H 0.08 2.30 5.12 -2.38 -0.01 2.28 16 27 H 0.11 2.27 8.03 -2.39 -0.02 2.25 16 28 H 0.06 1.99 7.45 -2.38 -0.02 1.97 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.14 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.43 2.78 9.10 -74.06 -0.67 2.11 16 32 H 0.14 4.96 4.45 -2.91 -0.01 4.95 16 33 H 0.11 5.55 6.18 -2.91 -0.02 5.54 16 34 H 0.30 12.49 8.29 -92.71 -0.77 11.72 16 35 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.10 4.55 7.84 -2.91 -0.02 4.53 16 Total: -1.00 -67.07 310.96 4.05 -63.02 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.45 Total: 27.07 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 4.15 Total: -15.88 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -2.20 Total: -59.12 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.39 Total: -51.67 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Total: -67.07 4.05 -63.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.973 kcal (2) G-P(sol) polarization free energy of solvation -67.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds