Wall clock time and date at job start Mon Mar 30 2020 02:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35907 * 116.99865 * 2 1 4 4 C 1.38426 * 119.93692 * 179.97438 * 3 2 1 5 5 C 1.39815 * 119.87658 * 180.02562 * 4 3 2 6 6 C 1.47167 * 120.12489 * 179.72749 * 5 4 3 7 7 C 1.34971 * 120.00424 * 180.02562 * 6 5 4 8 8 C 1.46230 * 119.99924 * 179.97438 * 7 6 5 9 9 O 1.21756 * 120.00430 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99592 * 179.97438 * 8 7 6 11 11 C 1.36711 * 119.99789 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00154 * 359.97438 * 11 10 8 13 13 C 1.39121 * 119.99805 * 180.02562 * 11 10 8 14 14 N 1.31315 * 120.00261 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99843 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46868 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47203 * 119.99889 * 15 13 11 18 18 H 1.48495 * 109.46738 * 239.99850 * 15 13 11 19 19 C 1.39815 * 119.75621 * 0.02562 * 5 4 3 20 20 C 1.38425 * 119.87794 * 359.97438 * 19 5 4 21 21 O 1.35909 * 119.93935 * 179.97438 * 20 19 5 22 22 C 1.42902 * 116.99963 * 180.02562 * 21 20 19 23 23 C 1.38787 * 119.94173 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47380 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47696 * 300.00181 * 1 2 3 26 26 H 1.09005 * 109.47310 * 60.00326 * 1 2 3 27 27 H 1.08000 * 120.06757 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.99581 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.99268 * 359.97438 * 7 6 5 30 30 H 0.96998 * 120.00216 * 359.97438 * 10 8 7 31 31 H 0.97008 * 120.00181 * 180.02562 * 14 13 11 32 32 H 1.08005 * 120.06286 * 179.97438 * 19 5 4 33 33 H 1.08999 * 109.46660 * 59.99956 * 22 21 20 34 34 H 1.08992 * 109.47033 * 179.97438 * 22 21 20 35 35 H 1.08999 * 109.47240 * 300.00511 * 22 21 20 36 36 H 1.08002 * 119.87563 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4283 1.2819 0.0005 5 6 4.0617 2.5284 0.0011 6 6 5.5311 2.6102 0.0077 7 6 6.1400 3.8147 0.0087 8 6 7.6001 3.8959 0.0159 9 8 8.2665 2.8769 0.0204 10 7 8.2081 5.0988 0.0164 11 6 9.5731 5.1747 0.0225 12 1 10.1642 4.2708 0.0274 13 6 10.2006 6.4163 0.0236 14 7 9.4820 7.5153 0.0182 15 14 12.0658 6.5201 0.0327 16 1 12.6377 5.1497 0.0385 17 1 12.5273 7.2445 -1.1787 18 1 12.5150 7.2486 1.2463 19 6 3.2940 3.6969 0.0016 20 6 1.9122 3.6141 0.0011 21 8 1.1647 4.7492 0.0021 22 6 -0.2555 4.5907 0.0021 23 6 1.2888 2.3741 0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0166 0.3762 0.0014 28 1 6.1222 1.7063 0.0126 29 1 5.5489 4.7185 0.0043 30 1 7.6772 5.9105 0.0116 31 1 9.9196 8.3811 0.0186 32 1 3.7782 4.6623 0.0025 33 1 -0.5594 4.0389 0.8916 34 1 -0.7305 5.5717 0.0034 35 1 -0.5596 4.0405 -0.8883 36 1 0.2105 2.3141 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060332214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:39 Heat of formation + Delta-G solvation = -71.418811 kcal Electronic energy + Delta-G solvation = -20061.448171 eV Core-core repulsion = 16704.899783 eV Total energy + Delta-G solvation = -3356.548388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55821 -38.92972 -38.24870 -36.94356 -34.16364 -32.83084 -31.33860 -30.42629 -29.21260 -28.09043 -26.74428 -25.44277 -23.23971 -22.38953 -20.63137 -18.92996 -18.27181 -17.76453 -17.04492 -16.34132 -16.11135 -16.06555 -15.65328 -15.47705 -14.87643 -14.65133 -14.14540 -13.64714 -13.42957 -13.39708 -12.86864 -12.68356 -12.45544 -12.12933 -11.78415 -11.64715 -11.48993 -11.30914 -11.21721 -11.01964 -10.96940 -10.41026 -10.32933 -9.70845 -9.44949 -8.45833 -8.11005 -8.04243 -7.95002 -6.58466 -3.87444 0.79907 1.49421 2.40668 3.07336 3.13384 3.15104 3.21551 3.29283 3.84703 4.08840 4.39712 4.63668 4.73650 4.79381 4.86885 4.90243 4.94817 5.05983 5.12895 5.18513 5.22577 5.28751 5.38939 5.46632 5.59525 5.81371 6.17506 6.22503 6.27864 6.37154 6.62234 6.94930 7.00459 7.10941 7.40498 7.40938 7.96884 8.51162 9.05990 9.42990 10.01362 10.58038 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029702 B = 0.003155 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.478056 B = 8873.574019 C = 9795.596392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.162 3.838 4 C -0.178 4.178 5 C 0.037 3.963 6 C -0.099 4.099 7 C -0.135 4.135 8 C 0.448 3.552 9 O -0.604 6.604 10 N -0.539 5.539 11 C -0.291 4.291 12 H 0.109 0.891 13 C 0.022 3.978 14 N -0.885 5.885 15 Si 0.934 3.066 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.184 4.184 20 C 0.165 3.835 21 O -0.313 6.313 22 C 0.028 3.972 23 C -0.305 4.305 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.395 0.605 31 H 0.276 0.724 32 H 0.138 0.862 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.074 -6.574 -0.052 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.117 3.883 4 C -0.197 4.197 5 C 0.036 3.964 6 C -0.121 4.121 7 C -0.157 4.157 8 C 0.238 3.762 9 O -0.492 6.492 10 N -0.171 5.171 11 C -0.421 4.421 12 H 0.127 0.873 13 C -0.181 4.181 14 N -0.525 5.525 15 Si 0.761 3.239 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.203 4.203 20 C 0.120 3.880 21 O -0.226 6.226 22 C -0.067 4.067 23 C -0.325 4.325 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.389 -6.973 -0.047 21.549 hybrid contribution -0.095 0.737 0.000 0.744 sum -20.484 -6.236 -0.047 21.413 Atomic orbital electron populations 1.23025 0.78733 1.03794 1.01152 1.86093 1.21129 1.26931 1.88652 1.18553 0.91870 0.83411 0.94459 1.20467 0.90983 0.98150 1.10127 1.18611 0.93112 0.91103 0.93540 1.21939 0.90251 0.99025 1.00858 1.23301 0.95528 0.97908 0.98924 1.17769 0.87225 0.84450 0.86778 1.90646 1.66120 1.34560 1.57900 1.41925 1.07708 1.06807 1.60707 1.19919 0.81771 0.94382 1.46046 0.87303 1.25432 1.01276 0.94631 0.96804 1.69585 1.36804 0.98148 1.47922 0.85718 0.81460 0.78861 0.77905 1.18909 1.20487 1.20494 1.20603 0.90120 0.99531 1.10047 1.18561 0.90878 0.84432 0.94178 1.86116 1.18715 1.29276 1.88539 1.23029 0.78863 1.03725 1.01082 1.21193 1.00094 0.91986 1.19202 0.88267 0.92820 0.92828 0.84654 0.84627 0.86485 0.77140 0.91407 0.84436 0.92846 0.88211 0.92838 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.71 10.49 -19.45 -0.20 -3.92 16 3 C 0.16 2.14 6.68 -39.31 -0.26 1.88 16 4 C -0.18 -2.57 9.73 -38.92 -0.38 -2.95 16 5 C 0.04 0.58 5.87 -105.09 -0.62 -0.04 16 6 C -0.10 -1.77 9.46 -37.12 -0.35 -2.12 16 7 C -0.14 -2.64 9.41 -37.53 -0.35 -2.99 16 8 C 0.45 11.11 7.69 -13.05 -0.10 11.01 16 9 O -0.60 -17.05 15.80 5.14 0.08 -16.97 16 10 N -0.54 -13.92 5.27 -12.31 -0.06 -13.99 16 11 C -0.29 -8.09 9.68 -15.05 -0.15 -8.23 16 12 H 0.11 3.16 7.15 -52.48 -0.38 2.79 16 13 C 0.02 0.59 5.50 -17.44 -0.10 0.49 16 14 N -0.89 -23.59 13.04 55.50 0.72 -22.87 16 15 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 C -0.18 -2.76 9.35 -38.92 -0.36 -3.12 16 20 C 0.16 2.24 6.68 -39.31 -0.26 1.98 16 21 O -0.31 -3.89 10.49 -19.45 -0.20 -4.09 16 22 C 0.03 0.22 9.81 101.05 0.99 1.21 16 23 C -0.31 -3.67 8.03 -39.18 -0.31 -3.99 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 27 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.14 2.51 7.52 -52.49 -0.39 2.12 16 29 H 0.12 1.98 6.07 -52.49 -0.32 1.66 16 30 H 0.39 9.66 7.87 -40.82 -0.32 9.34 16 31 H 0.28 6.87 8.31 -40.82 -0.34 6.54 16 32 H 0.14 2.00 6.16 -52.48 -0.32 1.68 16 33 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 36 H 0.13 1.19 4.48 -52.49 -0.24 0.95 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -32.30 316.16 -5.15 -37.45 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -3.96 Total: 9.78 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.26 Total: -5.69 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.66 Total: -36.86 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.33 Total: -24.98 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.30 -5.15 -37.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.967 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds